Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005160

Physical Location & Seq

Genomic Coordinates Forward (+)

21287209 .. 21287815

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0220400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCTGTTTTCAAGCATTGTTCCTTATTATCTATGATGGTAGCAGCATTGTGTTTGTCAAGCATCGATATGAGCCTCGCCGGCCGGCTTCTTTTGCAGACTACAATTCCAGCCCCAGCATTGCCTACAATTCCATCTCTTCCAAAGGCTACTTTGCCTCCACTGCCTTCCTTGCCGACGTTACCTAAACCCACCTTGCCAACCTTTCCAACTACCTCTCTCCCAACTCTGCCTAAATCCACATTGCCACCACTCCCAAGCACTCAAATTCCATCTTTGCCAAATCCGACATTGCCCACCATTCCGACTGCTCCCAAGGTCACTCTTCCCCCACTTCCAGCTACTCCATTGCCCACCTTCCCCACTACATTCCCTTCGATCCCCACCATCCCAACCATTCCTTCCCTCTCTCCTCCATCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010236 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

141

Amino Acids

14.63

Weight (kDa)

9.9

Isoelectric Point (pI)

67.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09820 AT5G09820 AT5G09820
fragaria_vesca	FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570
malus_domestica	MD15G1343200.v1.1
prunus_persica	Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1
pyrus_communis	pycom15g30310
rosa_chinensis	RchiOBHm_Chr2g0119061 RchiOBHm_Chr2g0119121
rosa_laevigata	RLG00000018446
rosa_multiflora	Rmu_sc0001653.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124500
rosa_rugosa	Rorug02G0220300 Rorug02G0220400
rosa_samantha	Rh2AG278400 Rh2BG289300
rosa_wichuraiana	Rw2G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	373
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	13
AjuI	GAANNNNNNNTTGG	2 cut(s)	385, 417
AluBI	AGCT	1 cut(s)	341
AluI	AGCT	1 cut(s)	341
AlwI	GGATC	1 cut(s)	373
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	5 cut(s)	31, 142, 280, 395, 424
BglI	GCCNNNNNGGC	1 cut(s)	81
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmsI	GCATC	1 cut(s)	72
Bsa29I	ATCGAT	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bse118I	RCCGGY	2 cut(s)	80, 84
Bse3DI	GCAATG	4 cut(s)	119, 242, 290, 347
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	387
BseMI	GCAATG	4 cut(s)	119, 242, 290, 347
BseRI	GAGGAG	1 cut(s)	402
BseX3I	CGGCCG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	56
BseYI	CCCAGC	1 cut(s)	115
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	66
BsiEI	CGRYCG	1 cut(s)	85
BsiSI	CCGG	2 cut(s)	81, 85
BsnI	GGCC	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	378
BspANI	GGCC	1 cut(s)	84
BspDI	ATCGAT	1 cut(s)	66
BspPI	GGATC	1 cut(s)	373
BsrDI	GCAATG	4 cut(s)	119, 242, 290, 347
BsrFI	RCCGGY	2 cut(s)	80, 84
BssAI	RCCGGY	2 cut(s)	80, 84
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	315
Bst6I	CTCTTC	2 cut(s)	144, 330
BstC8I	GCNNGC	2 cut(s)	82, 86
BstF5I	GGATG	1 cut(s)	387
BstKTI	GATC	1 cut(s)	381
BstMBI	GATC	1 cut(s)	378
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 94, 163, 172
BstV1I	GCAGC	1 cut(s)	56
BstZI	CGGCCG	1 cut(s)	82
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	387
BtsI	GCAGTG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	161
Cac8I	GCNNGC	2 cut(s)	82, 86
Cfr10I	RCCGGY	2 cut(s)	80, 84
ClaI	ATCGAT	1 cut(s)	66
CviJI	RGCY	7 cut(s)	5, 75, 84, 88, 113, 149, 341
CviKI_1	RGCY	7 cut(s)	5, 75, 84, 88, 113, 149, 341
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
EaeI	YGGCCR	1 cut(s)	82
EagI	CGGCCG	1 cut(s)	82
Eam1104I	CTCTTC	2 cut(s)	144, 330
EarI	CTCTTC	2 cut(s)	144, 330
EclXI	CGGCCG	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	315
Eco52I	CGGCCG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaiI	YATR	2 cut(s)	35, 71
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	45
GsaI	CCCAGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	2 cut(s)	81, 85
HpaII	CCGG	2 cut(s)	81, 85
Hpy188I	TCNGA	2 cut(s)	288, 306
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	4 cut(s)	177, 367, 384, 411
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 94, 163, 172
HpySE526I	ACGT	1 cut(s)	179
KroI	GCCGGC	2 cut(s)	80, 84
KroNI	GCCGGC	2 cut(s)	82, 86
Kzo9I	GATC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	5 cut(s)	94, 98, 123, 129, 351
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	1 cut(s)	72
MaeII	ACGT	1 cut(s)	179
MaeIII	GTNAC	2 cut(s)	180, 319
MalI	GATC	1 cut(s)	380
MboI	GATC	1 cut(s)	378
MboII	GAAGA	2 cut(s)	131, 317
MluCI	AATT	3 cut(s)	105, 129, 267
MmeI	TCCRAC	3 cut(s)	233, 311, 329
MnlI	CCTC	5 cut(s)	86, 168, 226, 416, 423
MroNI	GCCGGC	2 cut(s)	80, 84
MslI	CAYNNNNRTG	1 cut(s)	68
MspI	CCGG	2 cut(s)	81, 85
MwoI	GCNNNNNNNGC	4 cut(s)	81, 94, 163, 172
NaeI	GCCGGC	2 cut(s)	82, 86
NdeII	GATC	1 cut(s)	378
NgoMIV	GCCGGC	2 cut(s)	80, 84
NmuCI	GTSAC	1 cut(s)	319
PdiI	GCCGGC	2 cut(s)	82, 86
PkrI	GCNGC	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	68
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	378
SetI	ASST	8 cut(s)	182, 187, 197, 206, 218, 321, 343, 359
SfaNI	GCATC	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	68
Sse9I	AATT	3 cut(s)	105, 129, 267
StyI	CCWWGG	1 cut(s)	315
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	2 cut(s)	66, 377
TasI	AATT	3 cut(s)	105, 129, 267
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	319
TspRI	CASTG	1 cut(s)	168
XapI	RAATTY	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.