pre-rRNA processing protein involved in ribosome biogenesis
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G10070 AT5G10070 |
| fragaria_vesca | FvH4_1g21690 FvH4_1g21690 FvH4_1g21690 FvH4_1g21690 |
| malus_domestica | MD01G1023100.v1.1 MD15G1329600.v1.1 |
| prunus_persica | Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1 |
| pyrus_communis | pycom01g05130 pycom15g29590 |
| rosa_chinensis | RchiOBHm_Chr2g0115571 |
| rosa_laevigata | RLG00000018194 |
| rosa_multiflora | Rmu_sc0021766.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00128100 Rroxscaffold_2G00128980 |
| rosa_rugosa | Rorug02G0198100 Rorug02G0198200 |
| rosa_samantha | Rh2AG255600 Rh2BG266300 Rh2CG260800 Rh2DG263800 |
| rosa_wichuraiana | Rw2G019990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 265 |
| AciI | CCGC | 1 cut(s) | 468 |
| AcsI | RAATTY | 1 cut(s) | 518 |
| AfaI | GTAC | 1 cut(s) | 376 |
| AgsI | TTSAA | 5 cut(s) | 42, 134, 279, 523, 550 |
| AjiI | CACGTC | 1 cut(s) | 341 |
| AluBI | AGCT | 4 cut(s) | 190, 317, 367, 410 |
| AluI | AGCT | 4 cut(s) | 190, 317, 367, 410 |
| Alw21I | GWGCWC | 1 cut(s) | 179 |
| Alw44I | GTGCAC | 1 cut(s) | 175 |
| ApaLI | GTGCAC | 1 cut(s) | 175 |
| ApeKI | GCWGC | 2 cut(s) | 367, 407 |
| ApoI | RAATTY | 1 cut(s) | 518 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 84 |
| AxyI | CCTNAGG | 1 cut(s) | 105 |
| BaeGI | GKGCMC | 2 cut(s) | 179, 340 |
| BbsI | GAAGAC | 2 cut(s) | 291, 436 |
| Bbv12I | GWGCWC | 1 cut(s) | 179 |
| BbvI | GCAGC | 2 cut(s) | 354, 419 |
| BclI | TGATCA | 1 cut(s) | 94 |
| BfaI | CTAG | 1 cut(s) | 195 |
| BfmI | CTRYAG | 1 cut(s) | 498 |
| BisI | GCNGC | 3 cut(s) | 368, 408, 468 |
| BlsI | GCNGC | 3 cut(s) | 369, 409, 469 |
| BmgBI | CACGTC | 1 cut(s) | 341 |
| BmsI | GCATC | 1 cut(s) | 154 |
| BpiI | GAAGAC | 2 cut(s) | 291, 436 |
| Bsa29I | ATCGAT | 1 cut(s) | 22 |
| BsaJI | CCNNGG | 1 cut(s) | 395 |
| Bse1I | ACTGG | 4 cut(s) | 119, 235, 257, 416 |
| Bse21I | CCTNAGG | 1 cut(s) | 105 |
| Bse3DI | GCAATG | 1 cut(s) | 147 |
| BseCI | ATCGAT | 1 cut(s) | 22 |
| BseDI | CCNNGG | 1 cut(s) | 395 |
| BseGI | GGATG | 1 cut(s) | 115 |
| BseMI | GCAATG | 1 cut(s) | 147 |
| BseMII | CTCAG | 1 cut(s) | 96 |
| BseNI | ACTGG | 4 cut(s) | 119, 235, 257, 416 |
| BseSI | GKGCMC | 2 cut(s) | 179, 340 |
| BseXI | GCAGC | 2 cut(s) | 354, 419 |
| BsgI | GTGCAG | 1 cut(s) | 363 |
| BshVI | ATCGAT | 1 cut(s) | 22 |
| BsiHKAI | GWGCWC | 1 cut(s) | 179 |
| BslFI | GGGAC | 1 cut(s) | 338 |
| BsmFI | GGGAC | 1 cut(s) | 338 |
| Bsp1286I | GDGCHC | 2 cut(s) | 179, 340 |
| Bsp143I | GATC | 3 cut(s) | 23, 94, 292 |
| Bsp19I | CCATGG | 1 cut(s) | 395 |
| BspACI | CCGC | 1 cut(s) | 468 |
| BspCNI | CTCAG | 1 cut(s) | 97 |
| BspDI | ATCGAT | 1 cut(s) | 22 |
| BspMAI | CTGCAG | 1 cut(s) | 502 |
| BsrDI | GCAATG | 1 cut(s) | 147 |
| BsrI | ACTGG | 4 cut(s) | 119, 235, 257, 416 |
| BssECI | CCNNGG | 1 cut(s) | 395 |
| BssMI | GATC | 3 cut(s) | 23, 94, 292 |
| BssT1I | CCWWGG | 1 cut(s) | 395 |
| BstC8I | GCNNGC | 1 cut(s) | 192 |
| BstDEI | CTNAG | 1 cut(s) | 105 |
| BstDSI | CCRYGG | 1 cut(s) | 395 |
| BstF5I | GGATG | 1 cut(s) | 115 |
| BstKTI | GATC | 3 cut(s) | 26, 97, 295 |
| BstMBI | GATC | 3 cut(s) | 23, 94, 292 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 464 |
| BstSFI | CTRYAG | 1 cut(s) | 498 |
| BstSLI | GKGCMC | 2 cut(s) | 179, 340 |
| BstV1I | GCAGC | 2 cut(s) | 354, 419 |
| BstV2I | GAAGAC | 2 cut(s) | 291, 436 |
| Bsu15I | ATCGAT | 1 cut(s) | 22 |
| Bsu36I | CCTNAGG | 1 cut(s) | 105 |
| BsuTUI | ATCGAT | 1 cut(s) | 22 |
| BtgI | CCRYGG | 1 cut(s) | 395 |
| BtrI | CACGTC | 1 cut(s) | 341 |
| BtsCI | GGATG | 1 cut(s) | 115 |
| BtsIMutI | CAGTG | 1 cut(s) | 228 |
| Cac8I | GCNNGC | 1 cut(s) | 192 |
| ClaI | ATCGAT | 1 cut(s) | 22 |
| Csp6I | GTAC | 1 cut(s) | 375 |
| CviAII | CATG | 4 cut(s) | 396, 435, 447, 533 |
| CviJI | RGCY | 5 cut(s) | 190, 317, 367, 410, 458 |
| CviKI_1 | RGCY | 5 cut(s) | 190, 317, 367, 410, 458 |
| CviQI | GTAC | 1 cut(s) | 375 |
| DdeI | CTNAG | 1 cut(s) | 105 |
| DpnI | GATC | 3 cut(s) | 25, 96, 294 |
| DpnII | GATC | 3 cut(s) | 23, 94, 292 |
| Eco130I | CCWWGG | 1 cut(s) | 395 |
| Eco81I | CCTNAGG | 1 cut(s) | 105 |
| EcoT14I | CCWWGG | 1 cut(s) | 395 |
| ErhI | CCWWGG | 1 cut(s) | 395 |
| FaeI | CATG | 4 cut(s) | 399, 438, 450, 536 |
| FaiI | YATR | 8 cut(s) | 18, 291, 397, 426, 436, 448, 481, 534 |
| FaqI | GGGAC | 1 cut(s) | 338 |
| FatI | CATG | 4 cut(s) | 395, 434, 446, 532 |
| FbaI | TGATCA | 1 cut(s) | 94 |
| FblI | GTMKAC | 1 cut(s) | 265 |
| Fnu4HI | GCNGC | 3 cut(s) | 368, 408, 468 |
| FokI | GGATG | 1 cut(s) | 122 |
| Fsp4HI | GCNGC | 3 cut(s) | 368, 408, 468 |
| FspBI | CTAG | 1 cut(s) | 195 |
| GluI | GCNGC | 3 cut(s) | 368, 408, 468 |
| Hin1II | CATG | 4 cut(s) | 399, 438, 450, 536 |
| HincII | GTYRAC | 1 cut(s) | 226 |
| HindII | GTYRAC | 1 cut(s) | 226 |
| HindIII | AAGCTT | 1 cut(s) | 188 |
| HinfI | GANTC | 2 cut(s) | 80, 234 |
| HpaI | GTTAAC | 1 cut(s) | 226 |
| Hpy166II | GTNNAC | 3 cut(s) | 177, 226, 266 |
| Hpy188I | TCNGA | 2 cut(s) | 54, 297 |
| Hpy188III | TCNNGA | 2 cut(s) | 92, 98 |
| Hpy8I | GTNNAC | 3 cut(s) | 177, 226, 266 |
| HpyAV | CCTTC | 1 cut(s) | 484 |
| HpyCH4IV | ACGT | 1 cut(s) | 340 |
| HpyCH4V | TGCA | 6 cut(s) | 68, 167, 177, 362, 380, 500 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 464 |
| HpyF3I | CTNAG | 1 cut(s) | 105 |
| HpySE526I | ACGT | 1 cut(s) | 340 |
| Hsp92II | CATG | 4 cut(s) | 399, 438, 450, 536 |
| Ksp22I | TGATCA | 1 cut(s) | 94 |
| KspAI | GTTAAC | 1 cut(s) | 226 |
| Kzo9I | GATC | 3 cut(s) | 23, 94, 292 |
| LpnPI | CCDG | 6 cut(s) | 117, 132, 165, 216, 270, 429 |
| Lsp1109I | GCAGC | 2 cut(s) | 354, 419 |
| LweI | GCATC | 1 cut(s) | 154 |
| MaeI | CTAG | 1 cut(s) | 195 |
| MaeII | ACGT | 1 cut(s) | 340 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MalI | GATC | 3 cut(s) | 25, 96, 294 |
| MboI | GATC | 3 cut(s) | 23, 94, 292 |
| MboII | GAAGA | 3 cut(s) | 86, 296, 441 |
| MfeI | CAATTG | 1 cut(s) | 134 |
| MhlI | GDGCHC | 2 cut(s) | 179, 340 |
| MluCI | AATT | 5 cut(s) | 37, 134, 215, 421, 518 |
| MmeI | TCCRAC | 1 cut(s) | 32 |
| MnlI | CCTC | 6 cut(s) | 26, 99, 100, 165, 393, 448 |
| MroXI | GAANNNNTTC | 1 cut(s) | 84 |
| MseI | TTAA | 6 cut(s) | 201, 209, 225, 251, 300, 473 |
| MunI | CAATTG | 1 cut(s) | 134 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 464 |
| NcoI | CCATGG | 1 cut(s) | 395 |
| NdeII | GATC | 3 cut(s) | 23, 94, 292 |
| NlaIII | CATG | 4 cut(s) | 399, 438, 450, 536 |
| PdmI | GAANNNNTTC | 1 cut(s) | 84 |
| PfeI | GAWTC | 2 cut(s) | 80, 234 |
| PkrI | GCNGC | 3 cut(s) | 369, 409, 469 |
| PstI | CTGCAG | 1 cut(s) | 502 |
| RsaI | GTAC | 1 cut(s) | 376 |
| RsaNI | GTAC | 1 cut(s) | 375 |
| SaqAI | TTAA | 6 cut(s) | 201, 209, 225, 251, 300, 473 |
| SatI | GCNGC | 3 cut(s) | 368, 408, 468 |
| Sau3AI | GATC | 3 cut(s) | 23, 94, 292 |
| SduI | GDGCHC | 2 cut(s) | 179, 340 |
| SfaNI | GCATC | 1 cut(s) | 154 |
| SfcI | CTRYAG | 1 cut(s) | 498 |
| Sse9I | AATT | 5 cut(s) | 37, 134, 215, 421, 518 |
| SsiI | CCGC | 1 cut(s) | 468 |
| SspMI | CTAG | 1 cut(s) | 195 |
| StyI | CCWWGG | 1 cut(s) | 395 |
| TaiI | ACGT | 1 cut(s) | 343 |
| TaqI | TCGA | 1 cut(s) | 22 |
| TasI | AATT | 5 cut(s) | 37, 134, 215, 421, 518 |
| TatI | WGTACW | 1 cut(s) | 374 |
| TauI | GCSGC | 1 cut(s) | 470 |
| TfiI | GAWTC | 2 cut(s) | 80, 234 |
| Tru1I | TTAA | 6 cut(s) | 201, 209, 225, 251, 300, 473 |
| Tru9I | TTAA | 6 cut(s) | 201, 209, 225, 251, 300, 473 |
| TscAI | CASTG | 1 cut(s) | 235 |
| TseI | GCWGC | 2 cut(s) | 367, 407 |
| TspDTI | ATGAA | 2 cut(s) | 93, 126 |
| TspRI | CASTG | 1 cut(s) | 235 |
| VneI | GTGCAC | 1 cut(s) | 175 |
| XapI | RAATTY | 1 cut(s) | 518 |
| XmiI | GTMKAC | 1 cut(s) | 265 |
| XmnI | GAANNNNTTC | 1 cut(s) | 84 |
| XspI | CTAG | 1 cut(s) | 195 |