Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006687

Physical Location & Seq

Genomic Coordinates Reverse (-)

18348047 .. 18353088

Gene Structure 5042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G178600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGGTAACAACAAGCGGTTCAAGAACCACAAGCCCCATCGTGGACAATCTAGTCGGACCAATAACCATCTTCCACATGAAGGTGATTCTCTACCATCTGATCAAGCTACGGAAGAGGAGCCAACGGGTCCCAAAATCCAGCTTGCAATGTGGGATTTTGGCCAATGTGATGCAAAAAAGTGCACAGGACGCAAGCTTTCAAGATTTGGGTTTTTGAAAGAATTGCGTGTCAATAATGGTTTTGGAGGAATTGTTTTGAGTCCAGTTGGGACGCTTTGTGTCTCAAGAGAAGATTATAGCTTAATCCAGAGAAAAGGATTAGCTGTTGTGGATTGCTCTTGGGCACGCTTGGATGATGTACCGTTTGTGAAGCTGCGTTGCACTGCTCCTCGCCTCTTGCCTTGGCTTGTAGCAGCAAATCCGGTAAATTATGGTCGACCCTGTCAACTATCTTGTGTGGAGGCATTATCTGCAGCTTTATTCATATGTGGGGAAGAAGAAACTGCAAATTTGTTGCTTGGAAAGTTCAAATGGGGTCATGGTTTCCTGTCCCTCAACAGGGAACTTCTAAAGGCATACTCTAAATGTGAAAATAGTGCTGATATTATTTCAGTCCAAAATGATTGGCTTTCACAAAATAGTCAACTTCCAAAGGTTCCTGCAGAAGTGAAAGGAGCGGACGAGTCATCCCTCAGAGAAGATGAGGGCTCTTATGATTCCGACGACGGACTTCCACCACTGGAAAGGAATATGAATCATTTAGACATACAGGAAAGTGATGATGAAAGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RLI Ribo_biogen_C

Protein Analysis

265

Amino Acids

29.36

Weight (kDa)

5.48

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10070 AT5G10070
fragaria_vesca	FvH4_1g21690 FvH4_1g21690 FvH4_1g21690 FvH4_1g21690
malus_domestica	MD01G1023100.v1.1 MD15G1329600.v1.1
prunus_persica	Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1
pyrus_communis	pycom01g05130 pycom15g29590
rosa_chinensis	RchiOBHm_Chr2g0115571
rosa_laevigata	RLG00000018194
rosa_multiflora	Rmu_sc0021766.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128100 Rroxscaffold_2G00128980
rosa_rugosa	Rorug02G0198100 Rorug02G0198200
rosa_samantha	Rh2AG255600 Rh2BG266300 Rh2CG260800 Rh2DG263800
rosa_wichuraiana	Rw2G019990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	51
AccBSI	CCGCTC	1 cut(s)	677
AccI	GTMKAC	1 cut(s)	436
AciI	CCGC	2 cut(s)	16, 677
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	508
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	4 cut(s)	41, 80, 558, 559
AgsI	TTSAA	4 cut(s)	22, 201, 217, 529
AluBI	AGCT	7 cut(s)	107, 142, 196, 300, 323, 373, 476
AluI	AGCT	7 cut(s)	107, 142, 196, 300, 323, 373, 476
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	286
Alw44I	GTGCAC	1 cut(s)	181
AoxI	GGCC	1 cut(s)	160
ApaLI	GTGCAC	1 cut(s)	181
ApeKI	GCWGC	3 cut(s)	373, 413, 473
ApoI	RAATTY	1 cut(s)	508
AspS9I	GGNCC	2 cut(s)	57, 128
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	2 cut(s)	57, 128
BaeGI	GKGCMC	2 cut(s)	185, 346
BalI	TGGCCA	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	710
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	3 cut(s)	360, 425, 485
BccI	CCATC	3 cut(s)	45, 75, 103
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	2 cut(s)	471, 660
BisI	GCNGC	3 cut(s)	374, 414, 474
BlsI	GCNGC	3 cut(s)	375, 415, 475
Bme18I	GGWCC	2 cut(s)	57, 128
BmgT120I	GGNCC	2 cut(s)	57, 128
BmiI	GGNNCC	4 cut(s)	120, 129, 130, 657
BmsI	GCATC	1 cut(s)	160
BpuEI	CTTGAG	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	401
BsaWI	WCCGGW	1 cut(s)	421
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 80, 558, 559
Bse1I	ACTGG	2 cut(s)	263, 744
Bse3DI	GCAATG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	2 cut(s)	358, 686
BseLI	CCNNNNNNNGG	4 cut(s)	41, 80, 558, 559
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	706
BseNI	ACTGG	2 cut(s)	263, 744
BseRI	GAGGAG	2 cut(s)	131, 378
BseSI	GKGCMC	2 cut(s)	185, 346
BseXI	GCAGC	3 cut(s)	360, 425, 485
BshFI	GGCC	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	3 cut(s)	114, 283, 535
BslI	CCNNNNNNNGG	4 cut(s)	41, 80, 558, 559
BsmAI	GTCTC	1 cut(s)	286
BsmFI	GGGAC	3 cut(s)	114, 283, 535
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	3 cut(s)	185, 346, 710
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	2 cut(s)	16, 677
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	705
BspLI	GGNNCC	4 cut(s)	120, 129, 130, 657
BspMAI	CTGCAG	2 cut(s)	475, 664
BsrBI	CCGCTC	1 cut(s)	677
BsrDI	GCAATG	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	263, 744
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	363
Bst6I	CTCTTC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	3 cut(s)	144, 194, 346
BstDEI	CTNAG	1 cut(s)	692
BstF5I	GGATG	2 cut(s)	358, 686
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 470
BstSFI	CTRYAG	2 cut(s)	471, 660
BstSLI	GKGCMC	2 cut(s)	185, 346
BstV1I	GCAGC	3 cut(s)	360, 425, 485
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	358, 686
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	381, 737
Cac8I	GCNNGC	3 cut(s)	144, 194, 346
Cfr13I	GGNCC	2 cut(s)	57, 128
CseI	GACGC	2 cut(s)	198, 280
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	2 cut(s)	77, 539
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	1 cut(s)	692
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
DrdI	GACNNNNNNGTC	1 cut(s)	51
DseDI	GACNNNNNNGTC	1 cut(s)	51
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	710
Eco47I	GGWCC	2 cut(s)	57, 128
EcoO109I	RGGNCCY	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	401
EcoT38I	GRGCYC	1 cut(s)	710
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	2 cut(s)	80, 542
FaqI	GGGAC	3 cut(s)	114, 283, 535
FatI	CATG	2 cut(s)	76, 538
FauNDI	CATATG	1 cut(s)	485
FbaI	TGATCA	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	436
Fnu4HI	GCNGC	3 cut(s)	374, 414, 474
FokI	GGATG	2 cut(s)	365, 673
FriOI	GRGCYC	1 cut(s)	710
Fsp4HI	GCNGC	3 cut(s)	374, 414, 474
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	3 cut(s)	374, 414, 474
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	1 cut(s)	422
HgaI	GACGC	2 cut(s)	198, 280
Hin1II	CATG	2 cut(s)	80, 542
HincII	GTYRAC	3 cut(s)	437, 446, 644
HindII	GTYRAC	3 cut(s)	437, 446, 644
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	5 cut(s)	86, 259, 683, 716, 754
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	5 cut(s)	44, 183, 437, 446, 644
Hpy188I	TCNGA	4 cut(s)	57, 100, 695, 721
Hpy188III	TCNNGA	4 cut(s)	22, 201, 285, 307
Hpy8I	GTNNAC	5 cut(s)	44, 183, 437, 446, 644
Hpy99I	CGWCG	2 cut(s)	725, 728
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	363
HpyCH4V	TGCA	7 cut(s)	146, 173, 183, 381, 473, 506, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 470
HpyF3I	CTNAG	1 cut(s)	692
Hsp92II	CATG	2 cut(s)	80, 542
KflI	GGGWCCC	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	3 cut(s)	118, 391, 674
Lsp1109I	GCAGC	3 cut(s)	360, 425, 485
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	1 cut(s)	102
MbiI	CCGCTC	1 cut(s)	677
MboI	GATC	1 cut(s)	100
MboII	GAAGA	6 cut(s)	62, 125, 302, 506, 509, 710
MhlI	GDGCHC	3 cut(s)	185, 346, 710
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	4 cut(s)	221, 249, 427, 508
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	2 cut(s)	268, 692
MmeI	TCCRAC	2 cut(s)	35, 744
MnlI	CCTC	8 cut(s)	109, 239, 399, 404, 454, 563, 697, 701
Mox20I	TGGCCA	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	1 cut(s)	302
MslI	CAYNNNNRTG	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	162
MspI	CCGG	1 cut(s)	422
MwoI	GCNNNNNNNGC	2 cut(s)	189, 470
NdeI	CATATG	1 cut(s)	485
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	80, 542
NlaIV	GGNNCC	4 cut(s)	120, 129, 130, 657
PfeI	GAWTC	3 cut(s)	86, 716, 754
PflFI	GACNNNGTC	1 cut(s)	441
PkrI	GCNGC	3 cut(s)	375, 415, 475
PleI	GAGTC	2 cut(s)	267, 691
PpsI	GAGTC	2 cut(s)	267, 691
PpuMI	RGGWCCY	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	128
PspN4I	GGNNCC	4 cut(s)	120, 129, 130, 657
PspPI	GGNCC	2 cut(s)	57, 128
PspPPI	RGGWCCY	1 cut(s)	128
PstI	CTGCAG	2 cut(s)	475, 664
PsyI	GACNNNGTC	1 cut(s)	441
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	81
SalI	GTCGAC	1 cut(s)	435
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	3 cut(s)	374, 414, 474
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	2 cut(s)	57, 128
SchI	GAGTC	2 cut(s)	268, 692
SduI	GDGCHC	3 cut(s)	185, 346, 710
SetI	ASST	9 cut(s)	85, 109, 144, 198, 302, 325, 375, 478, 657
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	2 cut(s)	471, 660
SinI	GGWCC	2 cut(s)	57, 128
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
Sse9I	AATT	4 cut(s)	221, 249, 427, 508
SsiI	CCGC	2 cut(s)	16, 677
SspMI	CTAG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	1 cut(s)	363
TaqI	TCGA	1 cut(s)	436
TasI	AATT	4 cut(s)	221, 249, 427, 508
TfiI	GAWTC	3 cut(s)	86, 716, 754
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	2 cut(s)	388, 744
TseI	GCWGC	3 cut(s)	373, 413, 473
TspDTI	ATGAA	3 cut(s)	93, 472, 767
TspGWI	ACGGA	2 cut(s)	125, 741
TspRI	CASTG	2 cut(s)	388, 744
Tth111I	GACNNNGTC	1 cut(s)	441
VneI	GTGCAC	1 cut(s)	181
VpaK11BI	GGWCC	2 cut(s)	57, 128
XapI	RAATTY	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	436
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.