Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006687

Physical Location & Seq

Genomic Coordinates Reverse (-)

64752642 .. 64761849

Gene Structure 9208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00128980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCTGAGTTTCTTGTTTGATGATACTTTTGTCATGGAGAAGCTGGACCCGGATGGTAAAAAGTTTGATAAAGTTTCCCGAATTGTAGCACGGAGTGAGAAGCATGGTGCTTTGCTGCACCTGGATTGGAGCACCTGTTACAAACCAGGCTCAGGTATTTCACTAATCATTGATTCAGTGCTTAGACTTTTCAAATGCTTCACTGCTGCCATATCTTATATAGTCGGTGATTCAAGCCAACTCTGTATGCAAGTGATTAGACAACAAGCCTCCAAGGTCAGCCTTCCGAAATCGGAGTCTAGTTTTGTATATCTTGAACAATTGCGGGTGAACCATGGTTTTGGAGGCATTGTATTGAGTCCAGTGGGGACGGATTGTGTCTCAAGAGAAGATTATAGCTTAATCCAGCAAAAAGGTTTAGCTGTTGTGGATTGCTCTTGGGCACGCTTGGGTGATGTACCCTTTGTGAAGCTGCGTTGCACTGCTCCTCGCCTCTTGCCTTGGCTTGTAGCAGCAAATCCAGTAAATTATGGTCGACCATGTGAACTATCCTGCGTGGAGGCCTTATCTGCAGCTTTATTCATATGTGGGGAAGAGGAAACTGCAAATTTGTTGCTTGGAAAGTTCAAATGGGGTCATGCTTTCCTATCCCTCAACAGGGAACTTCTAAAGGCATACTCTAATTGTGAAAACAGTGCCGAGATTATTTCATTCCAAAATGCCTGGCTTGCACAGGAAAGACAAGTTCCAAAGGTTCCTACAGAAGTAGAAGGAGGAGAGAGGTCAGCTCGCAGTGATGATGAGGGTTCTTATGATTCTGACGATGGGCTTCCGCCACTTGAAAAGAATATGAATCATTTAGACTTAGAGGATAGTGATGAAGAAAGTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RLI Ribo_biogen_C

Protein Analysis

297

Amino Acids

32.97

Weight (kDa)

4.93

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb8	PF03870	7 - 45	2.2e-07	RNA polymerase Rpb8
Ribo_biogen_C	PF04034	117 - 243	6.3e-52	Ribosome biogenesis protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10070 AT5G10070
fragaria_vesca	FvH4_1g21690 FvH4_1g21690 FvH4_1g21690 FvH4_1g21690
malus_domestica	MD01G1023100.v1.1 MD15G1329600.v1.1
prunus_persica	Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1
pyrus_communis	pycom01g05130 pycom15g29590
rosa_chinensis	RchiOBHm_Chr2g0115571
rosa_laevigata	RLG00000018194
rosa_multiflora	Rmu_sc0021766.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128100 Rroxscaffold_2G00128980
rosa_rugosa	Rorug02G0198100 Rorug02G0198200
rosa_samantha	Rh2AG255600 Rh2BG266300 Rh2CG260800 Rh2DG263800
rosa_wichuraiana	Rw2G019990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	535
AciI	CCGC	2 cut(s)	325, 833
AcsI	RAATTY	1 cut(s)	607
AdeI	CACNNNGTG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	3 cut(s)	152, 657, 658
AgsI	TTSAA	5 cut(s)	193, 234, 317, 628, 842
AjnI	CCWGG	3 cut(s)	120, 145, 722
AluBI	AGCT	6 cut(s)	43, 399, 422, 472, 575, 788
AluI	AGCT	6 cut(s)	43, 399, 422, 472, 575, 788
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	385
AoxI	GGCC	1 cut(s)	561
ApeKI	GCWGC	5 cut(s)	115, 206, 472, 512, 572
ApoI	RAATTY	1 cut(s)	607
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	3 cut(s)	239, 340, 464
AvaII	GGWCC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	445
BaeI	ACNNNNGTAYC	2 cut(s)	15, 48
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	5 cut(s)	102, 193, 459, 524, 584
BccI	CCATC	2 cut(s)	47, 818
BciT130I	CCWGG	3 cut(s)	122, 147, 724
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	385
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	2 cut(s)	570, 759
BisI	GCNGC	5 cut(s)	116, 207, 473, 513, 573
BlsI	GCNGC	5 cut(s)	117, 208, 474, 514, 574
Bme1390I	CCNGG	4 cut(s)	50, 122, 147, 724
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	48, 756
BmrFI	CCNGG	4 cut(s)	50, 122, 147, 724
BplI	GAGNNNNNCTC	2 cut(s)	772, 804
Bpu10I	CCTNAGC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	367
BpuMI	CCSGG	1 cut(s)	50
BsaJI	CCNNGG	3 cut(s)	273, 334, 500
BsaXI	ACNNNNNCTCC	4 cut(s)	121, 151, 336, 366
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 657, 658
Bse1I	ACTGG	2 cut(s)	362, 521
BseBI	CCWGG	3 cut(s)	122, 147, 724
BseDI	CCNNGG	3 cut(s)	273, 334, 500
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	3 cut(s)	152, 657, 658
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	2 cut(s)	362, 521
BseRI	GAGGAG	2 cut(s)	477, 789
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	5 cut(s)	102, 193, 459, 524, 584
BsgI	GTGCAG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	563
BsiHKAI	GWGCWC	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	3 cut(s)	152, 657, 658
BsmAI	GTCTC	1 cut(s)	385
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	563
Bsp1286I	GDGCHC	2 cut(s)	134, 445
Bsp19I	CCATGG	1 cut(s)	334
BspACI	CCGC	2 cut(s)	325, 833
BspANI	GGCC	1 cut(s)	563
BspCNI	CTCAG	1 cut(s)	164
BspLI	GGNNCC	2 cut(s)	48, 756
BspMAI	CTGCAG	1 cut(s)	574
BsrI	ACTGG	2 cut(s)	362, 521
BssECI	CCNNGG	3 cut(s)	273, 334, 500
BssT1I	CCWWGG	3 cut(s)	273, 334, 500
Bst2UI	CCWGG	3 cut(s)	122, 147, 724
Bst4CI	ACNGT	1 cut(s)	695
Bst6I	CTCTTC	1 cut(s)	588
BstC8I	GCNNGC	3 cut(s)	445, 729, 790
BstDEI	CTNAG	4 cut(s)	5, 151, 182, 865
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	2 cut(s)	569, 728
BstNI	CCWGG	3 cut(s)	122, 147, 724
BstSCI	CCNGG	4 cut(s)	48, 120, 145, 722
BstSFI	CTRYAG	2 cut(s)	570, 759
BstSLI	GKGCMC	1 cut(s)	445
BstV1I	GCAGC	5 cut(s)	102, 193, 459, 524, 584
BstXI	CCANNNNNNTGG	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	563
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	58
BtsI	GCAGTG	3 cut(s)	201, 480, 799
BtsIMutI	CAGTG	6 cut(s)	183, 201, 369, 480, 700, 799
Cac8I	GCNNGC	3 cut(s)	445, 729, 790
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	5 cut(s)	34, 104, 335, 540, 638
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	4 cut(s)	5, 151, 182, 865
DraIII	CACNNNGTG	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
EciI	GGCGGA	1 cut(s)	822
Eco130I	CCWWGG	3 cut(s)	273, 334, 500
Eco147I	AGGCCT	1 cut(s)	563
Eco47I	GGWCC	1 cut(s)	46
EcoRII	CCWGG	3 cut(s)	120, 145, 722
EcoT14I	CCWWGG	3 cut(s)	273, 334, 500
ErhI	CCWWGG	3 cut(s)	273, 334, 500
FaeI	CATG	5 cut(s)	37, 107, 338, 543, 641
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	5 cut(s)	33, 103, 334, 539, 637
FauI	CCCGC	1 cut(s)	318
FauNDI	CATATG	1 cut(s)	584
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	5 cut(s)	116, 207, 473, 513, 573
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	5 cut(s)	116, 207, 473, 513, 573
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	5 cut(s)	116, 207, 473, 513, 573
HaeIII	GGCC	1 cut(s)	563
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	5 cut(s)	37, 107, 338, 543, 641
HincII	GTYRAC	1 cut(s)	536
HindII	GTYRAC	1 cut(s)	536
HinfI	GANTC	6 cut(s)	173, 230, 296, 358, 815, 853
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	3 cut(s)	239, 340, 464
Hpy166II	GTNNAC	3 cut(s)	331, 536, 545
Hpy188I	TCNGA	3 cut(s)	288, 295, 820
Hpy188III	TCNNGA	3 cut(s)	78, 314, 384
Hpy8I	GTNNAC	3 cut(s)	331, 536, 545
HpyAV	CCTTC	2 cut(s)	293, 764
HpyCH4III	ACNGT	1 cut(s)	695
HpyCH4V	TGCA	6 cut(s)	118, 250, 480, 572, 605, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	569, 728
HpyF3I	CTNAG	4 cut(s)	5, 151, 182, 865
Hsp92II	CATG	5 cut(s)	37, 107, 338, 543, 641
LmnI	GCTCC	2 cut(s)	129, 490
Lsp1109I	GCAGC	5 cut(s)	102, 193, 459, 524, 584
MaeI	CTAG	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	137
MboII	GAAGA	3 cut(s)	401, 605, 893
MfeI	CAATTG	1 cut(s)	320
MhlI	GDGCHC	2 cut(s)	134, 445
MluCI	AATT	5 cut(s)	81, 320, 526, 607, 682
MlyI	GAGTC	2 cut(s)	305, 367
MseI	TTAA	1 cut(s)	401
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	4 cut(s)	50, 122, 147, 724
MunI	CAATTG	1 cut(s)	320
MvaI	CCWGG	3 cut(s)	122, 147, 724
MwoI	GCNNNNNNNGC	2 cut(s)	569, 728
NciI	CCSGG	1 cut(s)	50
NcoI	CCATGG	1 cut(s)	334
NdeI	CATATG	1 cut(s)	584
NlaIII	CATG	5 cut(s)	37, 107, 338, 543, 641
NlaIV	GGNNCC	2 cut(s)	48, 756
NmeAIII	GCCGAG	1 cut(s)	724
PceI	AGGCCT	1 cut(s)	563
PfeI	GAWTC	4 cut(s)	173, 230, 815, 853
PkrI	GCNGC	5 cut(s)	117, 208, 474, 514, 574
PleI	GAGTC	2 cut(s)	304, 366
PpsI	GAGTC	2 cut(s)	304, 366
Psp6I	CCWGG	3 cut(s)	120, 145, 722
PspGI	CCWGG	3 cut(s)	120, 145, 722
PspN4I	GGNNCC	2 cut(s)	48, 756
PspPI	GGNCC	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	574
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
SalI	GTCGAC	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	5 cut(s)	116, 207, 473, 513, 573
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	2 cut(s)	305, 367
ScrFI	CCNGG	4 cut(s)	50, 122, 147, 724
SduI	GDGCHC	2 cut(s)	134, 445
SfcI	CTRYAG	2 cut(s)	570, 759
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	5 cut(s)	81, 320, 526, 607, 682
SseBI	AGGCCT	1 cut(s)	563
SsiI	CCGC	2 cut(s)	325, 833
SspMI	CTAG	1 cut(s)	300
StuI	AGGCCT	1 cut(s)	563
StyD4I	CCNGG	4 cut(s)	48, 120, 145, 722
StyI	CCWWGG	3 cut(s)	273, 334, 500
TaaI	ACNGT	1 cut(s)	695
TaqI	TCGA	1 cut(s)	535
TasI	AATT	5 cut(s)	81, 320, 526, 607, 682
TfiI	GAWTC	4 cut(s)	173, 230, 815, 853
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TscAI	CASTG	6 cut(s)	183, 208, 369, 487, 700, 799
TseI	GCWGC	5 cut(s)	115, 206, 472, 512, 572
TspDTI	ATGAA	4 cut(s)	571, 699, 866, 894
TspGWI	ACGGA	2 cut(s)	106, 386
TspRI	CASTG	6 cut(s)	183, 208, 369, 487, 700, 799
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	607
XmiI	GTMKAC	1 cut(s)	535
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.