Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006687

Physical Location & Seq

Genomic Coordinates Forward (+)

36293194 .. 36300360

Gene Structure 7167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1329600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGTAACAACAAGCGGTTCAAGAACCATAAGCCGCCTCACCGTGACCGTGGGCAATCTAGCCGGACCCATCACCATCTTCCACAGTCTGACGAATCCCTACCGTCCGATCAAGCTACTGAAGAGGAGCCAACAGCAACAGGTCCCAAAATCCAGCTTGCAATGTGGGATTTTGGCCAATGTGATGCAAAAAGATGCACGGGACGCAAGCTTTCAAGATTTGGCTTTTTGAAAGAATTGCGTGTCAATAATGGTTTTGGAGGCATTGTTTTGAGTCCAGTTGGGATGCTTTGTGTCTCAAGAGAAGATTATAGTTTAATCCAGCGAAAAGGATTGGCTGTTGTGGATTGCTCTTGGGCACGCTTGGATGATGTACCATTTGTGAAGCTGCGTTGCACTGCTCCTCGCCTCTTGCCTTGGCTTGTAGCAGCAAATCCAGTAAATTATGGTCGACCCTGTCAACTATCTTGTGTGGAGGCATTATCTGCGGCTTTGTTCATATGTGGGGAAGAAGAAACTGCAAATTTGTTGCTTGGAAAGTTCAAATGGGGTCATGCTTTCCTGTCCCTGAATAGGGAACTTCTGAAGGCATACTCCAAATGTGAAAATAGTGCTGAAATAATTTCGGTCCAAAATGATTGGCTTTCACAAAACAGTCAGGTTCCAAAGTCTCCTAGAGAAGTAAAAGGAGGAGGAGCAGACCTGTCCTCTCTCGGTGAAGATGAGGAGGGCTCTTGTGATTCCGATGATGGGCTTCCGCCACTGGAAAGGAATATGAATCACTTAGACATACAGGAAAGTGATGAAGAAAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RLI Ribo_biogen_C

Protein Analysis

273

Amino Acids

30.18

Weight (kDa)

5.58

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer4_RLI	PF04068	52 - 83	1.5e-13	Possible Fer4-like domain in RNase L inhibitor, RLI
Ribo_biogen_C	PF04034	89 - 215	2.2e-52	Ribosome biogenesis protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10070 AT5G10070
fragaria_vesca	FvH4_1g21690 FvH4_1g21690 FvH4_1g21690 FvH4_1g21690
malus_domestica	MD01G1023100.v1.1 MD15G1329600.v1.1
prunus_persica	Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1
pyrus_communis	pycom01g05130 pycom15g29590
rosa_chinensis	RchiOBHm_Chr2g0115571
rosa_laevigata	RLG00000018194
rosa_multiflora	Rmu_sc0021766.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128100 Rroxscaffold_2G00128980
rosa_rugosa	Rorug02G0198100 Rorug02G0198200
rosa_samantha	Rh2AG255600 Rh2BG266300 Rh2CG260800 Rh2DG263800
rosa_wichuraiana	Rw2G019990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	451
AciI	CCGC	4 cut(s)	16, 35, 488, 758
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	523
AcuI	CTGAAG	2 cut(s)	141, 605
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	3 cut(s)	573, 574, 750
AgsI	TTSAA	4 cut(s)	22, 216, 232, 544
AluBI	AGCT	4 cut(s)	116, 157, 211, 388
AluI	AGCT	4 cut(s)	116, 157, 211, 388
Alw26I	GTCTC	2 cut(s)	301, 675
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	388, 428
ApoI	RAATTY	1 cut(s)	523
AspS9I	GGNCC	3 cut(s)	66, 143, 628
AsuHPI	GGTGA	3 cut(s)	32, 65, 728
AvaII	GGWCC	3 cut(s)	66, 143, 628
BaeGI	GKGCMC	1 cut(s)	361
BalI	TGGCCA	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	734
BbvI	GCAGC	2 cut(s)	375, 440
BccI	CCATC	3 cut(s)	78, 84, 743
BcoDI	GTCTC	2 cut(s)	301, 675
BfaI	CTAG	2 cut(s)	60, 675
BisI	GCNGC	4 cut(s)	35, 389, 429, 489
BlsI	GCNGC	4 cut(s)	36, 390, 430, 490
Bme18I	GGWCC	3 cut(s)	66, 143, 628
BmgT120I	GGNCC	3 cut(s)	66, 143, 628
BmiI	GGNNCC	4 cut(s)	68, 129, 145, 663
BmsI	GCATC	3 cut(s)	175, 185, 276
BplI	GAGNNNNNCTC	2 cut(s)	716, 748
BpuEI	CTTGAG	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	49, 416
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	3 cut(s)	573, 574, 750
Bse1I	ACTGG	3 cut(s)	278, 437, 768
Bse3DI	GCAATG	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	49, 416
BseGI	GGATG	2 cut(s)	291, 373
BseLI	CCNNNNNNNGG	3 cut(s)	573, 574, 750
BseMI	GCAATG	1 cut(s)	168
BseNI	ACTGG	3 cut(s)	278, 437, 768
BseRI	GAGGAG	5 cut(s)	140, 393, 705, 708, 740
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	2 cut(s)	375, 440
BshFI	GGCC	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	3 cut(s)	129, 216, 550
BslI	CCNNNNNNNGG	3 cut(s)	573, 574, 750
BsmAI	GTCTC	2 cut(s)	301, 675
BsmFI	GGGAC	3 cut(s)	129, 216, 550
BsnI	GGCC	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	361, 734
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	4 cut(s)	16, 35, 488, 758
BspANI	GGCC	1 cut(s)	177
BspLI	GGNNCC	4 cut(s)	68, 129, 145, 663
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	3 cut(s)	278, 437, 768
BssECI	CCNNGG	2 cut(s)	49, 416
BssMI	GATC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	416
Bst4CI	ACNGT	5 cut(s)	44, 50, 87, 105, 656
Bst6I	CTCTTC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstC8I	GCNNGC	3 cut(s)	159, 209, 361
BstDEI	CTNAG	1 cut(s)	784
BstDSI	CCRYGG	1 cut(s)	49
BstF5I	GGATG	2 cut(s)	291, 373
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	2 cut(s)	301, 675
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 485
BstSLI	GKGCMC	1 cut(s)	361
BstV1I	GCAGC	2 cut(s)	375, 440
BsuRI	GGCC	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	291, 373
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	396, 761
Cac8I	GCNNGC	3 cut(s)	159, 209, 361
Cfr13I	GGNCC	3 cut(s)	66, 143, 628
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	1 cut(s)	554
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	1 cut(s)	784
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
EciI	GGCGGA	1 cut(s)	747
Eco130I	CCWWGG	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	734
Eco47I	GGWCC	3 cut(s)	66, 143, 628
Eco57I	CTGAAG	2 cut(s)	141, 605
EcoO109I	RGGNCCY	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	416
EcoT38I	GRGCYC	1 cut(s)	734
ErhI	CCWWGG	1 cut(s)	416
FaeI	CATG	1 cut(s)	557
FaiI	YATR	9 cut(s)	30, 312, 447, 500, 502, 555, 592, 776, 791
FaqI	GGGAC	3 cut(s)	129, 216, 550
FatI	CATG	1 cut(s)	553
FauNDI	CATATG	1 cut(s)	500
FblI	GTMKAC	1 cut(s)	451
Fnu4HI	GCNGC	4 cut(s)	35, 389, 429, 489
FokI	GGATG	2 cut(s)	298, 380
FriOI	GRGCYC	1 cut(s)	734
Fsp4HI	GCNGC	4 cut(s)	35, 389, 429, 489
FspBI	CTAG	2 cut(s)	60, 675
GluI	GCNGC	4 cut(s)	35, 389, 429, 489
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	1 cut(s)	64
HgaI	GACGC	1 cut(s)	213
Hin1II	CATG	1 cut(s)	557
HincII	GTYRAC	2 cut(s)	452, 461
HindII	GTYRAC	2 cut(s)	452, 461
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	4 cut(s)	95, 274, 740, 778
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	3 cut(s)	32, 65, 728
Hpy166II	GTNNAC	2 cut(s)	452, 461
Hpy188I	TCNGA	4 cut(s)	91, 109, 585, 745
Hpy188III	TCNNGA	3 cut(s)	22, 216, 300
Hpy8I	GTNNAC	2 cut(s)	452, 461
HpyAV	CCTTC	1 cut(s)	580
HpyCH4III	ACNGT	5 cut(s)	44, 50, 87, 105, 656
HpyCH4V	TGCA	5 cut(s)	161, 188, 198, 396, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 485
HpyF3I	CTNAG	1 cut(s)	784
Hsp92II	CATG	1 cut(s)	557
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	3 cut(s)	127, 406, 695
Lsp1109I	GCAGC	2 cut(s)	375, 440
LweI	GCATC	3 cut(s)	175, 185, 276
MaeI	CTAG	2 cut(s)	60, 675
MaeIII	GTNAC	2 cut(s)	5, 44
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	7 cut(s)	71, 134, 317, 521, 524, 731, 818
MhlI	GDGCHC	2 cut(s)	361, 734
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	4 cut(s)	236, 442, 523, 621
MluNI	TGGCCA	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	283
Mox20I	TGGCCA	1 cut(s)	177
MscI	TGGCCA	1 cut(s)	177
MseI	TTAA	2 cut(s)	317, 817
Msp20I	TGGCCA	1 cut(s)	177
MspI	CCGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	204, 485
NdeI	CATATG	1 cut(s)	500
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	1 cut(s)	557
NlaIV	GGNNCC	4 cut(s)	68, 129, 145, 663
NmuCI	GTSAC	1 cut(s)	44
PfeI	GAWTC	3 cut(s)	95, 740, 778
PflFI	GACNNNGTC	1 cut(s)	456
PkrI	GCNGC	4 cut(s)	36, 390, 430, 490
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PpuMI	RGGWCCY	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	143
PspN4I	GGNNCC	4 cut(s)	68, 129, 145, 663
PspPI	GGNCC	3 cut(s)	66, 143, 628
PspPPI	RGGWCCY	1 cut(s)	143
PsyI	GACNNNGTC	1 cut(s)	456
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SalI	GTCGAC	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	317, 817
SatI	GCNGC	4 cut(s)	35, 389, 429, 489
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	3 cut(s)	66, 143, 628
SchI	GAGTC	1 cut(s)	283
SduI	GDGCHC	2 cut(s)	361, 734
SetI	ASST	7 cut(s)	118, 145, 159, 213, 390, 663, 705
SfaNI	GCATC	3 cut(s)	175, 185, 276
SinI	GGWCC	3 cut(s)	66, 143, 628
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	4 cut(s)	236, 442, 523, 621
SsiI	CCGC	4 cut(s)	16, 35, 488, 758
SspMI	CTAG	2 cut(s)	60, 675
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	5 cut(s)	44, 50, 87, 105, 656
TaqI	TCGA	1 cut(s)	451
TaqII	GACCGA	1 cut(s)	616
TasI	AATT	4 cut(s)	236, 442, 523, 621
TauI	GCSGC	2 cut(s)	37, 491
TfiI	GAWTC	3 cut(s)	95, 740, 778
Tru1I	TTAA	2 cut(s)	317, 817
Tru9I	TTAA	2 cut(s)	317, 817
TscAI	CASTG	2 cut(s)	403, 768
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	2 cut(s)	388, 428
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	3 cut(s)	487, 791, 819
TspRI	CASTG	2 cut(s)	403, 768
Tth111I	GACNNNGTC	1 cut(s)	456
VpaK11BI	GGWCC	3 cut(s)	66, 143, 628
XapI	RAATTY	1 cut(s)	523
XmiI	GTMKAC	1 cut(s)	451
XspI	CTAG	2 cut(s)	60, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.