Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006687

Physical Location & Seq

Genomic Coordinates Reverse (-)

63696282 .. 63702462

Gene Structure 6181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00128100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCGCCCAACAAGCGGTTCAAGAACCACAAGCCCCATAACCATCGTGGCGAATCTAGTCGAACCCGTACCCATCTTCCACATCCAGTGGGGACGGATTGTGTCTCAAGAGAAGATTATAGCTTAATCCAGCAAAAAGGTTTAGCTGTTGTGGATTGCTCTTGGGCACGCTTGGGTGATGTACCCTTTGTGAAGCTGCGTTGCACTGCTCCTCGCCTCTGTATGAGCTTTAAGTCTTCACTCTTGGATATCTTTCTGAATGGGGAAGAGGAAACTGCAAATTTGTTGCTTGGAAAGTTCAAATGGGGTCATGCTTTCCTATCCCTCAACAGGGAACTTCTAAAGGCATACTCTAATTGTGAAAACAGTGCCGAGATTATTTCATTCCAAAATGCCTGGCTTGCACAGGAAAGACAAGTTCCAAAGGTTCCTACAGAAGTAGAAGGAGGAGAGAGGTCAGCTCGCAGTGATGATGAGGGTTCTTATGATTCTGACGATGGGCTTCCGCCACTTGAAAAGAATATGAATCATTTAGACTTAGAGGATAGTGATGAAGAAAGTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RLI Ribo_biogen_C

Protein Analysis

188

Amino Acids

21.24

Weight (kDa)

5.41

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribo_biogen_C	PF04034	29 - 73	3.2e-08	Ribosome biogenesis protein, C-terminal
Ribo_biogen_C	PF04034	85 - 134	1e-12	Ribosome biogenesis protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10070 AT5G10070
fragaria_vesca	FvH4_1g21690 FvH4_1g21690 FvH4_1g21690 FvH4_1g21690
malus_domestica	MD01G1023100.v1.1 MD15G1329600.v1.1
prunus_persica	Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1
pyrus_communis	pycom01g05130 pycom15g29590
rosa_chinensis	RchiOBHm_Chr2g0115571
rosa_laevigata	RLG00000018194
rosa_multiflora	Rmu_sc0021766.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128100 Rroxscaffold_2G00128980
rosa_rugosa	Rorug02G0198100 Rorug02G0198200
rosa_samantha	Rh2AG255600 Rh2BG266300 Rh2CG260800 Rh2DG263800
rosa_wichuraiana	Rw2G019990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	2 cut(s)	16, 506
AcsI	RAATTY	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	70, 183
AfiI	CCNNNNNNNGG	3 cut(s)	15, 330, 331
AgsI	TTSAA	3 cut(s)	22, 301, 515
AjnI	CCWGG	1 cut(s)	395
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	5 cut(s)	123, 146, 196, 228, 461
AluI	AGCT	5 cut(s)	123, 146, 196, 228, 461
Alw26I	GTCTC	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	196
ApoI	RAATTY	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	188
BaeGI	GKGCMC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	3 cut(s)	51, 81, 491
BciT130I	CCWGG	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	397
BmiI	GGNNCC	2 cut(s)	6, 429
BmrFI	CCNGG	1 cut(s)	397
BpiI	GAAGAC	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	445, 477
BpuEI	CTTGAG	1 cut(s)	91
BsaHI	GRCGYC	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 330, 331
Bse1I	ACTGG	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	397
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	3 cut(s)	15, 330, 331
BseNI	ACTGG	1 cut(s)	86
BseRI	GAGGAG	2 cut(s)	201, 462
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	4
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	3 cut(s)	15, 330, 331
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	169
BspACI	CCGC	2 cut(s)	16, 506
BspLI	GGNNCC	2 cut(s)	6, 429
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	86
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	397
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	169, 402, 463
BstDEI	CTNAG	1 cut(s)	538
BstF5I	GGATG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 401
BstNI	CCWGG	1 cut(s)	397
BstSCI	CCNGG	1 cut(s)	395
BstSFI	CTRYAG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	183
BstV2I	GAAGAC	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	82
BtsI	GCAGTG	2 cut(s)	204, 472
BtsIMutI	CAGTG	4 cut(s)	93, 204, 373, 472
Cac8I	GCNNGC	3 cut(s)	169, 402, 463
CfoI	GCGC	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	69, 182
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	8 cut(s)	34, 123, 146, 196, 228, 400, 461, 502
CviKI_1	RGCY	8 cut(s)	34, 123, 146, 196, 228, 400, 461, 502
CviQI	GTAC	2 cut(s)	69, 182
DdeI	CTNAG	1 cut(s)	538
DinI	GGCGCC	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	495
Eco32I	GATATC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	395
EcoRV	GATATC	1 cut(s)	250
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	1 cut(s)	314
FaiI	YATR	7 cut(s)	39, 120, 224, 312, 349, 486, 524
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	197
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	197
HaeII	RGCGCY	1 cut(s)	8
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	314
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	3 cut(s)	53, 488, 526
HphI	GGTGA	1 cut(s)	188
Hpy188I	TCNGA	2 cut(s)	258, 493
Hpy188III	TCNNGA	2 cut(s)	22, 108
HpyAV	CCTTC	1 cut(s)	437
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4V	TGCA	3 cut(s)	204, 278, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 401
HpyF3I	CTNAG	1 cut(s)	538
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	314
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	6 cut(s)	99, 143, 316, 382, 392, 409
Lsp1109I	GCAGC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	57
MboII	GAAGA	5 cut(s)	68, 125, 228, 278, 566
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	2 cut(s)	280, 355
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	8 cut(s)	222, 227, 262, 335, 440, 447, 469, 535
MseI	TTAA	2 cut(s)	125, 231
MspR9I	CCNGG	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	397
MwoI	GCNNNNNNNGC	2 cut(s)	13, 401
NarI	GGCGCC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	2 cut(s)	6, 429
NmeAIII	GCCGAG	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	53, 488, 526
PkrI	GCNGC	1 cut(s)	198
PluTI	GGCGCC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	395
PspN4I	GGNNCC	2 cut(s)	6, 429
RsaI	GTAC	2 cut(s)	70, 183
RsaNI	GTAC	2 cut(s)	69, 182
SaqAI	TTAA	2 cut(s)	125, 231
SatI	GCNGC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	397
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	8 cut(s)	125, 142, 148, 198, 230, 429, 458, 463
SfcI	CTRYAG	1 cut(s)	432
SfoI	GGCGCC	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	2 cut(s)	280, 355
SsiI	CCGC	2 cut(s)	16, 506
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	368
TaqI	TCGA	1 cut(s)	61
TasI	AATT	2 cut(s)	280, 355
TfiI	GAWTC	3 cut(s)	53, 488, 526
Tru1I	TTAA	2 cut(s)	125, 231
Tru9I	TTAA	2 cut(s)	125, 231
TscAI	CASTG	4 cut(s)	93, 211, 373, 472
TseI	GCWGC	1 cut(s)	196
TspDTI	ATGAA	3 cut(s)	372, 539, 567
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	4 cut(s)	93, 211, 373, 472
XapI	RAATTY	1 cut(s)	280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.