MD01G1023100.v1.1

pre-rRNA processing protein involved in ribosome biogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0006687
Physical Location & Seq
Reverse (-)
9040565 .. 9044383
3819 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1023100.v1.1.491

Sequence Viewer

Length: 531 bp
ATGCCAAAGATAGTTTCAAATGCACAACTGGATGGATGCTTAGTTTTTATATGTATTTATGTACTCTTATATGAACAAAAGTTGGAAAGAGTCTGTGAGATTACATATGGTGATAAATTTAAGTTGGCTTGGTTTGTAGCAGCAAATCCAGTAAATTATGGTCGACCCTGTCAACTATCTTGTGTGGAGGCATTATCTGCAGCTCTGTTCATATGTGGCGAAGAAGAAACTGCAAATTTGTTGCTTGGAAAGTTCAAATGGGGTCATGCTTTCCTGTCCCTCAATAGGGAACTTCTGAAGGCATACTCCAAATGTGAAAACAGTGCTGAAATAATTTCAGTCCAAAATGATTGGCTTTCACAAAACAGTCAGGTTCCCAAGGCTCCTAGAGAAGTAAAGGGAGGAGGAGCAGACCTGTCCTCTCTCAGTGACGGTGCGGAGGGCTCTTGTGATTCCAACGACGGGCTTCCACCACTGGAAAGGAATATGAATCACTTAGACATGCAGGAAAGTGATGAAGAAAGTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RLI Ribo_biogen_C

Protein Analysis

177

Amino Acids

19.44

Weight (kDa)

4.64

Isoelectric Point (pI)

32.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribo_biogen_C PF04034 35 - 119 1.4e-33 Ribosome biogenesis protein, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 163
AciI CCGC 1 cut(s) 437
AcsI RAATTY 2 cut(s) 116, 235
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 1 cut(s) 63
AfiI CCNNNNNNNGG 3 cut(s) 285, 286, 462
AgsI TTSAA 2 cut(s) 18, 256
AjuI GAANNNNNNNTTGG 1 cut(s) 30
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
ApeKI GCWGC 2 cut(s) 140, 200
ApoI RAATTY 2 cut(s) 116, 235
AsuHPI GGTGA 1 cut(s) 122
BanII GRGCYC 1 cut(s) 446
BbvI GCAGC 2 cut(s) 152, 212
BccI CCATC 1 cut(s) 26
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 2 cut(s) 141, 201
BlsI GCNGC 2 cut(s) 142, 202
BmiI GGNNCC 2 cut(s) 375, 384
BmsI GCATC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 378
Bsc4I CCNNNNNNNGG 3 cut(s) 285, 286, 462
Bse1I ACTGG 3 cut(s) 33, 149, 480
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 2 cut(s) 37, 41
BseLI CCNNNNNNNGG 3 cut(s) 285, 286, 462
BseMII CTCAG 1 cut(s) 439
BseNI ACTGG 3 cut(s) 33, 149, 480
BseRI GAGGAG 2 cut(s) 417, 420
BseXI GCAGC 2 cut(s) 152, 212
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 3 cut(s) 285, 286, 462
BsmFI GGGAC 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 446
BspACI CCGC 1 cut(s) 437
BspCNI CTCAG 1 cut(s) 438
BspLI GGNNCC 2 cut(s) 375, 384
BspMAI CTGCAG 1 cut(s) 202
BsrI ACTGG 3 cut(s) 33, 149, 480
BssECI CCNNGG 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 378
Bst4CI ACNGT 3 cut(s) 323, 368, 434
BstAPI GCANNNNNTGC 1 cut(s) 197
BstDEI CTNAG 3 cut(s) 40, 425, 496
BstF5I GGATG 2 cut(s) 37, 41
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 505
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 2 cut(s) 152, 212
BtsCI GGATG 2 cut(s) 37, 41
BtsIMutI CAGTG 3 cut(s) 328, 433, 473
Csp6I GTAC 1 cut(s) 62
CviAII CATG 2 cut(s) 266, 502
CviJI RGCY 6 cut(s) 128, 203, 355, 383, 444, 466
CviKI_1 RGCY 6 cut(s) 128, 203, 355, 383, 444, 466
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 3 cut(s) 40, 425, 496
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 446
Eco57I CTGAAG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 1 cut(s) 446
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 2 cut(s) 269, 505
FaqI GGGAC 1 cut(s) 262
FatI CATG 2 cut(s) 265, 501
FauNDI CATATG 2 cut(s) 106, 212
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 2 cut(s) 141, 201
FokI GGATG 2 cut(s) 44, 48
FriOI GRGCYC 1 cut(s) 446
Fsp4HI GCNGC 2 cut(s) 141, 201
FspBI CTAG 1 cut(s) 387
GluI GCNGC 2 cut(s) 141, 201
Hin1II CATG 2 cut(s) 269, 505
HincII GTYRAC 2 cut(s) 164, 173
HindII GTYRAC 2 cut(s) 164, 173
HinfI GANTC 3 cut(s) 90, 452, 490
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 164, 173
Hpy188I TCNGA 1 cut(s) 297
Hpy8I GTNNAC 2 cut(s) 164, 173
Hpy99I CGWCG 1 cut(s) 464
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 3 cut(s) 323, 368, 434
HpyCH4V TGCA 4 cut(s) 23, 200, 233, 505
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 3 cut(s) 40, 425, 496
Hsp92II CATG 2 cut(s) 269, 505
LmnI GCTCC 2 cut(s) 388, 407
LpnPI CCDG 8 cut(s) 14, 162, 181, 287, 356, 428, 461, 491
Lsp1109I GCAGC 2 cut(s) 152, 212
LweI GCATC 1 cut(s) 26
MaeI CTAG 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 428
MboII GAAGA 3 cut(s) 233, 236, 530
MhlI GDGCHC 1 cut(s) 446
MluCI AATT 4 cut(s) 116, 154, 235, 333
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 2 cut(s) 63, 480
MnlI CCTC 6 cut(s) 181, 290, 395, 398, 430, 433
MseI TTAA 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeI CATATG 2 cut(s) 106, 212
NlaIII CATG 2 cut(s) 269, 505
NlaIV GGNNCC 2 cut(s) 375, 384
NmuCI GTSAC 1 cut(s) 428
NspI RCATGY 1 cut(s) 505
PfeI GAWTC 2 cut(s) 452, 490
PflFI GACNNNGTC 1 cut(s) 168
PkrI GCNGC 2 cut(s) 142, 202
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PspN4I GGNNCC 2 cut(s) 375, 384
PstI CTGCAG 1 cut(s) 202
PsyI GACNNNGTC 1 cut(s) 168
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SalI GTCGAC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 2 cut(s) 141, 201
SchI GAGTC 1 cut(s) 99
SduI GDGCHC 1 cut(s) 446
SetI ASST 3 cut(s) 205, 375, 417
SfaNI GCATC 1 cut(s) 26
SfcI CTRYAG 1 cut(s) 198
Sse9I AATT 4 cut(s) 116, 154, 235, 333
SsiI CCGC 1 cut(s) 437
SspMI CTAG 1 cut(s) 387
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 3 cut(s) 323, 368, 434
TaqI TCGA 1 cut(s) 163
TasI AATT 4 cut(s) 116, 154, 235, 333
TatI WGTACW 1 cut(s) 61
TfiI GAWTC 2 cut(s) 452, 490
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 3 cut(s) 328, 433, 480
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 2 cut(s) 140, 200
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 4 cut(s) 87, 199, 503, 531
TspRI CASTG 3 cut(s) 328, 433, 480
Tth111I GACNNNGTC 1 cut(s) 168
XapI RAATTY 2 cut(s) 116, 235
XceI RCATGY 1 cut(s) 505
XmiI GTMKAC 1 cut(s) 163
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.