Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006687

Physical Location & Seq

Genomic Coordinates Forward (+)

13655085 .. 13661352

Gene Structure 6268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21690.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCGCCCAATAAGCGGTTCAAGAACCACAAGCCCCATCATAATCACCGCGGCGAATCTAGTCGAAACCGCAACCAACTTCCACATGACGACGAGTCCCTACCGTCTGATCAACAAGCTACTGATGAGGAGCCGATACGTCCCAAAATCCAGCTGGTCATGTGGGATTTCGGTCAATGCGATGCAAAAAGGTGCACGGGACGCAAGCTCTCGAGATTTGGATTTTTGAAAGAGTTGCGTGTCAACCATGGTTTTGGAGGCATTGTTTTGAGTCCAGTGGGGACAGCTTGTGTCTCAAGAGAAGATTATAGTTTAATCCAGCAAAAAGGTTTGGCTGTTGTGGATTGCTCTTGGGCACGGTTGGGTGATGTACCCTTTGTAAAACTCCGTTGCACTGCTCCTCGTCTCTTGCCTTGGCTTGTAGCAGCAAATCCAGTAAATTATGGTCGACCATGTGAACTATCATGCGTGGAGGCCTTATCTGCAGCTTTGTTCATATGCGGGGAAGAGGAAACTGCAAATTTGTTGCTCGGAAAGTTCAAATGGGGTCATGCTTTCCTATCCCTCAACAGGGAACTTCTAAAGGCATACTCTAATTGTGAAAACAGTGCTGAAATTATTTCATTCCAAAATGCCTGGCTTGCACAAGAAAGACAAGTTCCAAAGGTTCCTACAGAAGTAGAAGGAGGAGAGACGTCAGCTCGCAGTGATGACGAGGGTTCTTATGATTCTGACGATGGGCTTCCGCCTCTTGAAAAGAATATGAATCATTTAGACTTAGAGGACAGTGATGAAGAAAGTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RLI Ribo_biogen_C

Protein Analysis

269

Amino Acids

30.02

Weight (kDa)

5.36

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer4_RLI	PF04068	1 - 30	4.8e-12	Possible Fer4-like domain in RNase L inhibitor, RLI
Ribo_biogen_C	PF04034	35 - 161	3.3e-52	Ribosome biogenesis protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10070 AT5G10070
fragaria_vesca	FvH4_1g21690 FvH4_1g21690 FvH4_1g21690 FvH4_1g21690
malus_domestica	MD01G1023100.v1.1 MD15G1329600.v1.1
prunus_persica	Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1
pyrus_communis	pycom01g05130 pycom15g29590
rosa_chinensis	RchiOBHm_Chr2g0115571
rosa_laevigata	RLG00000018194
rosa_multiflora	Rmu_sc0021766.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128100 Rroxscaffold_2G00128980
rosa_rugosa	Rorug02G0198100 Rorug02G0198200
rosa_samantha	Rh2AG255600 Rh2BG266300 Rh2CG260800 Rh2DG263800
rosa_wichuraiana	Rw2G019990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	698
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	448
AccII	CGCG	1 cut(s)	51
AciI	CCGC	6 cut(s)	16, 49, 51, 70, 501, 746
AcsI	RAATTY	1 cut(s)	520
AcyI	GRCGYC	2 cut(s)	5, 695
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	3 cut(s)	15, 570, 571
AgsI	TTSAA	4 cut(s)	22, 229, 541, 755
AhdI	GACNNNNNGTC	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	635
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	6 cut(s)	119, 154, 208, 287, 488, 701
AluI	AGCT	6 cut(s)	119, 154, 208, 287, 488, 701
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	3 cut(s)	298, 410, 686
Alw44I	GTGCAC	1 cut(s)	193
Ama87I	CYCGRG	1 cut(s)	211
AoxI	GGCC	1 cut(s)	474
ApaLI	GTGCAC	1 cut(s)	193
ApeKI	GCWGC	2 cut(s)	425, 485
ApoI	RAATTY	1 cut(s)	520
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	38, 377
AvaI	CYCGRG	1 cut(s)	211
BaeGI	GKGCMC	2 cut(s)	197, 358
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	437, 497
BccI	CCATC	2 cut(s)	45, 731
BciT130I	CCWGG	1 cut(s)	637
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	3 cut(s)	298, 410, 686
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	2 cut(s)	483, 672
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	3 cut(s)	52, 426, 486
BlsI	GCNGC	3 cut(s)	53, 427, 487
Bme1390I	CCNGG	1 cut(s)	637
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	211
BmiI	GGNNCC	3 cut(s)	6, 132, 669
BmrFI	CCNGG	1 cut(s)	637
BmsI	GCATC	1 cut(s)	172
BpuEI	CTTGAG	1 cut(s)	280
BsaHI	GRCGYC	2 cut(s)	5, 695
BsaJI	CCNNGG	3 cut(s)	49, 247, 413
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 570, 571
Bse1I	ACTGG	2 cut(s)	275, 434
BseBI	CCWGG	1 cut(s)	637
BseDI	CCNNGG	3 cut(s)	49, 247, 413
BseLI	CCNNNNNNNGG	3 cut(s)	15, 570, 571
BseNI	ACTGG	2 cut(s)	275, 434
BseRI	GAGGAG	3 cut(s)	143, 390, 702
BseSI	GKGCMC	2 cut(s)	197, 358
BseXI	GCAGC	2 cut(s)	437, 497
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	476
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	211
BslFI	GGGAC	4 cut(s)	82, 126, 213, 295
BslI	CCNNNNNNNGG	3 cut(s)	15, 570, 571
BsmAI	GTCTC	3 cut(s)	298, 410, 686
BsmBI	CGTCTC	2 cut(s)	410, 686
BsmFI	GGGAC	4 cut(s)	82, 126, 213, 295
BsnI	GGCC	1 cut(s)	476
BsoBI	CYCGRG	1 cut(s)	211
Bsp1286I	GDGCHC	2 cut(s)	197, 358
Bsp143I	GATC	1 cut(s)	109
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	6 cut(s)	16, 49, 51, 70, 501, 746
BspANI	GGCC	1 cut(s)	476
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	6, 132, 669
BspMAI	CTGCAG	1 cut(s)	487
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	275, 434
BssECI	CCNNGG	3 cut(s)	49, 247, 413
BssMI	GATC	1 cut(s)	109
BssNI	GRCGYC	2 cut(s)	5, 695
BssT1I	CCWWGG	2 cut(s)	247, 413
Bst2UI	CCWGG	1 cut(s)	637
Bst4CI	ACNGT	4 cut(s)	105, 360, 608, 788
Bst6I	CTCTTC	1 cut(s)	501
BstACI	GRCGYC	2 cut(s)	5, 695
BstC8I	GCNNGC	3 cut(s)	206, 642, 703
BstDEI	CTNAG	1 cut(s)	778
BstDSI	CCRYGG	2 cut(s)	49, 247
BstFNI	CGCG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	3 cut(s)	298, 410, 686
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 201, 482, 641
BstNI	CCWGG	1 cut(s)	637
BstSCI	CCNGG	1 cut(s)	635
BstSFI	CTRYAG	2 cut(s)	483, 672
BstSLI	GKGCMC	2 cut(s)	197, 358
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	437, 497
BstXI	CCANNNNNNTGG	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	476
BtgI	CCRYGG	2 cut(s)	49, 247
BtgZI	GCGATG	1 cut(s)	195
BtsI	GCAGTG	2 cut(s)	393, 712
BtsIMutI	CAGTG	5 cut(s)	282, 393, 613, 712, 793
Cac8I	GCNNGC	3 cut(s)	206, 642, 703
CfoI	GCGC	1 cut(s)	7
Cfr42I	CCGCGG	1 cut(s)	52
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	6 cut(s)	86, 160, 248, 453, 465, 551
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	1 cut(s)	778
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
DriI	GACNNNNNGTC	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	501
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	501
EciI	GGCGGA	1 cut(s)	735
Eco130I	CCWWGG	2 cut(s)	247, 413
Eco147I	AGGCCT	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	635
EcoT14I	CCWWGG	2 cut(s)	247, 413
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	247, 413
Esp3I	CGTCTC	2 cut(s)	410, 686
FaeI	CATG	6 cut(s)	89, 163, 251, 456, 468, 554
FaqI	GGGAC	4 cut(s)	82, 126, 213, 295
FatI	CATG	6 cut(s)	85, 159, 247, 452, 464, 550
FauI	CCCGC	1 cut(s)	494
FauNDI	CATATG	1 cut(s)	497
FbaI	TGATCA	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	448
Fnu4HI	GCNGC	3 cut(s)	52, 426, 486
Fsp4HI	GCNGC	3 cut(s)	52, 426, 486
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	52, 426, 486
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	476
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	2 cut(s)	5, 695
Hin1II	CATG	6 cut(s)	89, 163, 251, 456, 468, 554
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	2 cut(s)	244, 449
HindII	GTYRAC	2 cut(s)	244, 449
HinfI	GANTC	5 cut(s)	56, 95, 271, 728, 766
HphI	GGTGA	2 cut(s)	38, 377
Hpy166II	GTNNAC	4 cut(s)	195, 244, 449, 458
Hpy188I	TCNGA	3 cut(s)	109, 533, 733
Hpy188III	TCNNGA	5 cut(s)	22, 211, 213, 297, 752
Hpy8I	GTNNAC	4 cut(s)	195, 244, 449, 458
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	677
HpyCH4III	ACNGT	4 cut(s)	105, 360, 608, 788
HpyCH4IV	ACGT	2 cut(s)	139, 695
HpyCH4V	TGCA	6 cut(s)	185, 195, 393, 485, 518, 644
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 201, 482, 641
HpyF3I	CTNAG	1 cut(s)	778
HpySE526I	ACGT	2 cut(s)	139, 695
Hsp92I	GRCGYC	2 cut(s)	5, 695
Hsp92II	CATG	6 cut(s)	89, 163, 251, 456, 468, 554
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	109
KspI	CCGCGG	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	2 cut(s)	130, 403
LpnPI	CCDG	8 cut(s)	140, 164, 288, 332, 447, 556, 622, 649
Lsp1109I	GCAGC	2 cut(s)	437, 497
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	2 cut(s)	139, 695
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	3 cut(s)	314, 518, 806
MhlI	GDGCHC	2 cut(s)	197, 358
MluCI	AATT	4 cut(s)	439, 520, 595, 615
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	104, 280
MseI	TTAA	1 cut(s)	314
MspA1I	CMGCKG	2 cut(s)	51, 154
MspR9I	CCNGG	1 cut(s)	637
MvaI	CCWGG	1 cut(s)	637
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	4 cut(s)	13, 201, 482, 641
NarI	GGCGCC	1 cut(s)	5
NcoI	CCATGG	1 cut(s)	247
NdeI	CATATG	1 cut(s)	497
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	6 cut(s)	89, 163, 251, 456, 468, 554
NlaIV	GGNNCC	3 cut(s)	6, 132, 669
PaeR7I	CTCGAG	1 cut(s)	211
PceI	AGGCCT	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PfeI	GAWTC	3 cut(s)	56, 728, 766
PkrI	GCNGC	3 cut(s)	53, 427, 487
PleI	GAGTC	2 cut(s)	103, 279
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	103, 279
Psp6I	CCWGG	1 cut(s)	635
PspGI	CCWGG	1 cut(s)	635
PspN4I	GGNNCC	3 cut(s)	6, 132, 669
PstI	CTGCAG	1 cut(s)	487
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SacII	CCGCGG	1 cut(s)	52
SalI	GTCGAC	1 cut(s)	447
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	3 cut(s)	52, 426, 486
Sau3AI	GATC	1 cut(s)	109
SchI	GAGTC	2 cut(s)	104, 280
ScrFI	CCNGG	1 cut(s)	637
SduI	GDGCHC	2 cut(s)	197, 358
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	2 cut(s)	483, 672
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	211
Sfr303I	CCGCGG	1 cut(s)	52
SgrBI	CCGCGG	1 cut(s)	52
SlaI	CTCGAG	1 cut(s)	211
SmlI	CTYRAG	2 cut(s)	211, 295
SmoI	CTYRAG	2 cut(s)	211, 295
Sse9I	AATT	4 cut(s)	439, 520, 595, 615
SseBI	AGGCCT	1 cut(s)	476
SsiI	CCGC	6 cut(s)	16, 49, 51, 70, 501, 746
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	60
StuI	AGGCCT	1 cut(s)	476
StyD4I	CCNGG	1 cut(s)	635
StyI	CCWWGG	2 cut(s)	247, 413
TaaI	ACNGT	4 cut(s)	105, 360, 608, 788
TaiI	ACGT	2 cut(s)	142, 698
TaqI	TCGA	3 cut(s)	64, 212, 448
TaqII	GACCGA	1 cut(s)	161
TasI	AATT	4 cut(s)	439, 520, 595, 615
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	3 cut(s)	56, 728, 766
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	5 cut(s)	282, 400, 613, 712, 793
TseI	GCWGC	2 cut(s)	425, 485
TspDTI	ATGAA	4 cut(s)	484, 612, 779, 807
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	5 cut(s)	282, 400, 613, 712, 793
VneI	GTGCAC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XhoI	CTCGAG	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	448
XspI	CTAG	1 cut(s)	60
ZraI	GACGTC	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.