Rorug02G0198200

pre-rRNA processing protein involved in ribosome biogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006687
Physical Location & Seq
Forward (+)
18459222 .. 18462862
3641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0198200.1

Sequence Viewer

Length: 1467 bp
ATGTCATGGCTCGCCAAATCCATCGCCAACTCTCTCAAACTCGACGACGACGAAGACGGCTACAACAACCCCAACGCCTCCATCCCCATCCAAAACCCTAACTCCAATGCCGCCGACCCCAACTCCCCTCAACCCGGTTCGCCGTCCTCCGATCCCCGCGGCGGCGTCAAAGGCGACCTCTCCGAGCTCACCAAAACCCTATCCCGCCAGTTCTGGGGCGTCGCCTCGTTTCTCGCCCCGCCGCCCGATGCGGCCGCTCCGAAACCCGCCGAGCAGGGAGAGCCGTCCGATCCGGAGCTCTCCGAGGAGGACGTGATCGCCGGAATCCGGAGCGATTTCGCGGAGATCGGCGGGAAGTTCAAGAGCGGGATCTCGAAGCTTTCGAGCAACATGGCGGTTTCCGAGTTCACTAAGATCGCTTCGAATTTGCTCCAGTTTGGATCGGAGGAAGAGGCCGAGGCGGCTGGGCTGGCTCTCGGTGTGACGCCGGAGGTTCTTGCGTTCGTCAGAAATGTTTCTATGCATCCCGAGACTTGGCTCGATTTCCCTCTCTCTGATGATGATGAAGATTCAGATGATTTCGAATTGTCTGATGTCCAACAAGAGCATGCTCTGGCTGTTGAACGTCTTGCTCCGGCATTGGCTGCTCTCAGGATGGAACTCTGTCCTGAGCATATGAGTGAATCTCACTTTTGGATGATTTACTTTGTGCTCTTGCATCCTAGACTGAATAAACAAGATGCTGAGCTTTTGTCTACACCCAAGATAGTAGAAGTTAGAGCAATGTTGTCTCATGAGTTAAAGAAGGGAAATATGTCTAAGCCTGAATCTGACCCTTCAGCAAGTAGTGCTGCTTATTCAAAAGGAATTACTGATTCTCCCAAAGAACAGCATCTTTCTGTGCCACCAAGTGCTCAATCTGACATAATGCCACCCGAAACATCTACCATGAGATCAGCTCCTCCACCAGCAACAGCTGATATTGAGACAGAGAAGCACCCAGTCCAGAGTAGTGAAGTCCAAATTGTTGACAAGCCTGTTATTGAAGAAAGACCAGTGAAAGAGACCAACCATCCACTGCCACCCTCCACTTCTTCATCTAAAGTCTTGGACGAGAAAGATGAGGATGATGCTGATGATTGGTTGAAAGAGGAATCAGAGATGGATGGGGACGGTGTCGGTGGAACCTCCATCCCTATAGAGAACGATGAGGATGTATCATTCAGTGATCTTGAGGATGATGATGGAGATGTGCCATCAGGTTACAAGAAGGCCACATCTGGCTCTGACTCTTCAGCCAAAGATTCAAGAGACTGGGTTCAGCTAGGCAGAAGCTCTCCTGATTCAGATAAGGACATGAACTCTGTTGGAATCAGACATGCTGGGTCTGCGCAGGTAAGTTCCCGTAACCCAGAGACCAAAGAATCTAATGACTGGCTTGATGTTGATGACATTGATGTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RLI Ribo_biogen_C

Protein Analysis

488

Amino Acids

52.72

Weight (kDa)

4.3

Isoelectric Point (pI)

55.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 190 - 247 1.1e-14 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1392
Acc36I ACCTGC 1 cut(s) 1384
AccBSI CCGCTC 2 cut(s) 257, 366
AccI GTMKAC 1 cut(s) 755
AccII CGCG 2 cut(s) 159, 341
AccIII TCCGGA 2 cut(s) 292, 327
AclWI GGATC 4 cut(s) 146, 284, 377, 448
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 424
AcuI CTGAAG 2 cut(s) 822, 1278
AcyI GRCGYC 3 cut(s) 165, 219, 485
AdeI CACNNNGTG 1 cut(s) 911
AfiI CCNNNNNNNGG 5 cut(s) 134, 161, 214, 327, 534
AgsI TTSAA 6 cut(s) 361, 623, 861, 1046, 1147, 1308
AjiI CACGTC 1 cut(s) 313
AluBI AGCT 8 cut(s) 187, 298, 379, 748, 959, 977, 1324, 1335
AluI AGCT 8 cut(s) 187, 298, 379, 748, 959, 977, 1324, 1335
Alw21I GWGCWC 4 cut(s) 189, 300, 714, 916
Alw26I GTCTC 6 cut(s) 524, 795, 980, 1058, 1305, 1409
AlwI GGATC 4 cut(s) 146, 284, 377, 448
Ama87I CYCGRG 1 cut(s) 527
Aor13HI TCCGGA 2 cut(s) 292, 327
AoxI GGCC 3 cut(s) 252, 453, 1272
ApeKI GCWGC 2 cut(s) 644, 851
ApoI RAATTY 1 cut(s) 424
Asp700I GAANNNNTTC 1 cut(s) 514
AspLEI GCGC 1 cut(s) 1393
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 181
AsuII TTCGAA 2 cut(s) 422, 582
AvaI CYCGRG 1 cut(s) 527
BanII GRGCYC 2 cut(s) 189, 300
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 4 cut(s) 189, 300, 714, 916
BbvI GCAGC 2 cut(s) 631, 838
BceAI ACGGC 3 cut(s) 73, 127, 268
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 6 cut(s) 524, 795, 980, 1058, 1305, 1409
BfaI CTAG 2 cut(s) 723, 1325
BfmI CTRYAG 1 cut(s) 1197
BfuAI ACCTGC 1 cut(s) 1384
BglI GCCNNNNNGGC 1 cut(s) 461
BisI GCNGC 9 cut(s) 111, 160, 163, 242, 252, 255, 462, 645, 852
BlpI GCTNAGC 1 cut(s) 744
BlsI GCNGC 9 cut(s) 112, 161, 164, 243, 253, 256, 463, 646, 853
Bme1390I CCNGG 1 cut(s) 135
BmeT110I CYCGRG 1 cut(s) 527
BmgBI CACGTC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 1186
BmrFI CCNGG 1 cut(s) 135
BmrI ACTGGG 2 cut(s) 995, 1324
BmsI GCATC 6 cut(s) 238, 532, 727, 730, 901, 1120
BmuI ACTGGG 2 cut(s) 995, 1324
BpiI GAAGAC 1 cut(s) 60
BplI GAGNNNNNCTC 4 cut(s) 670, 702, 943, 975
BpmI CTGGAG 1 cut(s) 416
Bpu10I CCTNAGC 1 cut(s) 669
Bpu1102I GCTNAGC 1 cut(s) 744
Bpu14I TTCGAA 2 cut(s) 422, 582
BpuEI CTTGAG 1 cut(s) 1253
BpuMI CCSGG 1 cut(s) 135
BsaHI GRCGYC 3 cut(s) 165, 219, 485
BsaI GGTCTC 2 cut(s) 1058, 1409
BsaJI CCNNGG 3 cut(s) 157, 303, 456
BsaWI WCCGGW 2 cut(s) 292, 327
BsaXI ACNNNNNCTCC 6 cut(s) 86, 107, 116, 137, 862, 892
Bsc4I CCNNNNNNNGG 5 cut(s) 134, 161, 214, 327, 534
Bse1I ACTGG 6 cut(s) 208, 433, 1001, 1055, 1319, 1439
Bse3DI GCAATG 1 cut(s) 789
BseAI TCCGGA 2 cut(s) 292, 327
BseDI CCNNGG 3 cut(s) 157, 303, 456
BseLI CCNNNNNNNGG 5 cut(s) 134, 161, 214, 327, 534
BseMI GCAATG 1 cut(s) 789
BseMII CTCAG 3 cut(s) 660, 664, 735
BseNI ACTGG 6 cut(s) 208, 433, 1001, 1055, 1319, 1439
BseRI GAGGAG 2 cut(s) 320, 951
BseX3I CGGCCG 1 cut(s) 252
BseXI GCAGC 2 cut(s) 631, 838
BseYI CCCAGC 2 cut(s) 464, 1382
Bsh1236I CGCG 2 cut(s) 159, 341
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 3 cut(s) 254, 455, 1274
BsiEI CGRYCG 1 cut(s) 255
BsiHKAI GWGCWC 4 cut(s) 189, 300, 714, 916
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 6 cut(s) 135, 293, 321, 328, 488, 635
BslFI GGGAC 1 cut(s) 1184
BslI CCNNNNNNNGG 5 cut(s) 134, 161, 214, 327, 534
BsmAI GTCTC 6 cut(s) 524, 795, 980, 1058, 1305, 1409
BsmFI GGGAC 1 cut(s) 1184
BsnI GGCC 3 cut(s) 254, 455, 1274
Bso31I GGTCTC 2 cut(s) 1058, 1409
BsoBI CYCGRG 1 cut(s) 527
Bsp119I TTCGAA 2 cut(s) 422, 582
Bsp1286I GDGCHC 4 cut(s) 189, 300, 714, 916
Bsp13I TCCGGA 2 cut(s) 292, 327
Bsp143I GATC 9 cut(s) 151, 289, 315, 345, 369, 414, 440, 953, 1228
Bsp1720I GCTNAGC 1 cut(s) 744
BspANI GGCC 3 cut(s) 254, 455, 1274
BspCNI CTCAG 3 cut(s) 661, 663, 736
BspEI TCCGGA 2 cut(s) 292, 327
BspFNI CGCG 2 cut(s) 159, 341
BspHI TCATGA 1 cut(s) 793
BspLI GGNNCC 1 cut(s) 1186
BspMI ACCTGC 1 cut(s) 1384
BspPI GGATC 4 cut(s) 146, 284, 377, 448
BspT104I TTCGAA 2 cut(s) 422, 582
BspTNI GGTCTC 2 cut(s) 1058, 1409
BsrBI CCGCTC 2 cut(s) 257, 366
BsrDI GCAATG 1 cut(s) 789
BsrI ACTGG 6 cut(s) 208, 433, 1001, 1055, 1319, 1439
BssECI CCNNGG 3 cut(s) 157, 303, 456
BssMI GATC 9 cut(s) 151, 289, 315, 345, 369, 414, 440, 953, 1228
BssNI GRCGYC 3 cut(s) 165, 219, 485
Bst4CI ACNGT 1 cut(s) 1175
Bst6I CTCTTC 2 cut(s) 444, 1297
BstACI GRCGYC 3 cut(s) 165, 219, 485
BstAPI GCANNNNNTGC 2 cut(s) 644, 848
BstBI TTCGAA 2 cut(s) 422, 582
BstC8I GCNNGC 3 cut(s) 12, 471, 609
BstDEI CTNAG 5 cut(s) 411, 650, 669, 744, 819
BstDSI CCRYGG 1 cut(s) 157
BstFNI CGCG 2 cut(s) 159, 341
BstHHI GCGC 1 cut(s) 1393
BstKTI GATC 9 cut(s) 154, 292, 318, 348, 372, 417, 443, 956, 1231
BstMAI GTCTC 6 cut(s) 524, 795, 980, 1058, 1305, 1409
BstMBI GATC 9 cut(s) 151, 289, 315, 345, 369, 414, 440, 953, 1228
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 7 cut(s) 171, 280, 461, 470, 644, 848, 1388
BstNSI RCATGY 2 cut(s) 611, 1382
BstSCI CCNGG 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 1197
BstUI CGCG 2 cut(s) 159, 341
BstV1I GCAGC 2 cut(s) 631, 838
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BstZI CGGCCG 1 cut(s) 252
BsuRI GGCC 3 cut(s) 254, 455, 1274
BtgI CCRYGG 1 cut(s) 157
BtgZI GCGATG 1 cut(s) 7
BtrI CACGTC 1 cut(s) 313
BtsI GCAGTG 1 cut(s) 1076
BtsIMutI CAGTG 3 cut(s) 1062, 1076, 1231
BveI ACCTGC 1 cut(s) 1384
Cac8I GCNNGC 3 cut(s) 12, 471, 609
CciI TCATGA 1 cut(s) 793
CciNI GCGGCCGC 1 cut(s) 252
CfoI GCGC 1 cut(s) 1393
Cfr42I CCGCGG 1 cut(s) 160
CseI GACGC 3 cut(s) 154, 208, 493
CviAII CATG 7 cut(s) 6, 391, 608, 794, 949, 1357, 1379
DdeI CTNAG 5 cut(s) 411, 650, 669, 744, 819
DpnI GATC 9 cut(s) 153, 291, 317, 347, 371, 416, 442, 955, 1230
DpnII GATC 9 cut(s) 151, 289, 315, 345, 369, 414, 440, 953, 1228
DraIII CACNNNGTG 1 cut(s) 911
EaeI YGGCCR 1 cut(s) 252
EagI CGGCCG 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 444, 1297
EarI CTCTTC 2 cut(s) 444, 1297
Ecl136II GAGCTC 2 cut(s) 187, 298
EclXI CGGCCG 1 cut(s) 252
Eco24I GRGCYC 2 cut(s) 189, 300
Eco31I GGTCTC 2 cut(s) 1058, 1409
Eco52I CGGCCG 1 cut(s) 252
Eco53kI GAGCTC 2 cut(s) 187, 298
Eco57I CTGAAG 2 cut(s) 822, 1278
Eco88I CYCGRG 1 cut(s) 527
EcoICRI GAGCTC 2 cut(s) 187, 298
EcoT22I ATGCAT 1 cut(s) 525
EcoT38I GRGCYC 2 cut(s) 189, 300
FaeI CATG 7 cut(s) 9, 394, 611, 797, 952, 1360, 1382
FaqI GGGAC 1 cut(s) 1184
FatI CATG 7 cut(s) 5, 390, 607, 793, 948, 1356, 1378
FauI CCCGC 6 cut(s) 164, 212, 246, 274, 344, 359
FauNDI CATATG 1 cut(s) 675
FblI GTMKAC 1 cut(s) 755
Fnu4HI GCNGC 9 cut(s) 111, 160, 163, 242, 252, 255, 462, 645, 852
FriOI GRGCYC 2 cut(s) 189, 300
Fsp4HI GCNGC 9 cut(s) 111, 160, 163, 242, 252, 255, 462, 645, 852
FspBI CTAG 2 cut(s) 723, 1325
FspI TGCGCA 1 cut(s) 1392
GlaI GCGC 1 cut(s) 1392
GluI GCNGC 9 cut(s) 111, 160, 163, 242, 252, 255, 462, 645, 852
GsaI CCCAGC 2 cut(s) 468, 1386
GsuI CTGGAG 1 cut(s) 416
HaeIII GGCC 3 cut(s) 254, 455, 1274
HapII CCGG 6 cut(s) 135, 293, 321, 328, 488, 635
HgaI GACGC 3 cut(s) 154, 208, 493
HhaI GCGC 1 cut(s) 1393
Hin1I GRCGYC 3 cut(s) 165, 219, 485
Hin1II CATG 7 cut(s) 9, 394, 611, 797, 952, 1360, 1382
Hin6I GCGC 1 cut(s) 1391
HinP1I GCGC 1 cut(s) 1391
HincII GTYRAC 1 cut(s) 1030
HindII GTYRAC 1 cut(s) 1030
HindIII AAGCTT 1 cut(s) 377
HpaII CCGG 6 cut(s) 135, 293, 321, 328, 488, 635
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 3 cut(s) 408, 756, 1030
Hpy8I GTNNAC 3 cut(s) 408, 756, 1030
Hpy99I CGWCG 4 cut(s) 47, 50, 53, 224
HpyAV CCTTC 3 cut(s) 799, 846, 1264
HpyCH4III ACNGT 1 cut(s) 1175
HpyCH4IV ACGT 2 cut(s) 312, 625
HpyCH4V TGCA 2 cut(s) 523, 718
HpyF10VI GCNNNNNNNGC 7 cut(s) 171, 280, 461, 470, 644, 848, 1388
HpyF3I CTNAG 5 cut(s) 411, 650, 669, 744, 819
HpySE526I ACGT 2 cut(s) 312, 625
Hsp92I GRCGYC 3 cut(s) 165, 219, 485
Hsp92II CATG 7 cut(s) 9, 394, 611, 797, 952, 1360, 1382
HspAI GCGC 1 cut(s) 1391
Kpn2I TCCGGA 2 cut(s) 292, 327
KspI CCGCGG 1 cut(s) 160
Kzo9I GATC 9 cut(s) 151, 289, 315, 345, 369, 414, 440, 953, 1228
LmnI GCTCC 6 cut(s) 262, 295, 330, 435, 637, 964
Lsp1109I GCAGC 2 cut(s) 631, 838
LweI GCATC 6 cut(s) 238, 532, 727, 730, 901, 1120
MaeI CTAG 2 cut(s) 723, 1325
MaeII ACGT 2 cut(s) 312, 625
MaeIII GTNAC 3 cut(s) 481, 1262, 1406
MalI GATC 9 cut(s) 153, 291, 317, 347, 371, 416, 442, 955, 1230
MbiI CCGCTC 2 cut(s) 257, 366
MboI GATC 9 cut(s) 151, 289, 315, 345, 369, 414, 440, 953, 1228
MboII GAAGA 6 cut(s) 65, 461, 578, 1058, 1086, 1284
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 4 cut(s) 189, 300, 714, 916
MluCI AATT 4 cut(s) 424, 584, 867, 1023
MlyI GAGTC 1 cut(s) 1283
MmeI TCCRAC 2 cut(s) 622, 1348
Mph1103I ATGCAT 1 cut(s) 525
MroI TCCGGA 2 cut(s) 292, 327
MroXI GAANNNNTTC 1 cut(s) 514
MseI TTAA 1 cut(s) 800
MslI CAYNNNNRTG 1 cut(s) 678
MspA1I CMGCKG 2 cut(s) 159, 977
MspI CCGG 6 cut(s) 135, 293, 321, 328, 488, 635
MspR9I CCNGG 1 cut(s) 135
MvnI CGCG 2 cut(s) 159, 341
MwoI GCNNNNNNNGC 7 cut(s) 171, 280, 461, 470, 644, 848, 1388
NciI CCSGG 1 cut(s) 135
NdeI CATATG 1 cut(s) 675
NdeII GATC 9 cut(s) 151, 289, 315, 345, 369, 414, 440, 953, 1228
NlaIII CATG 7 cut(s) 9, 394, 611, 797, 952, 1360, 1382
NlaIV GGNNCC 1 cut(s) 1186
NmeAIII GCCGAG 2 cut(s) 295, 481
NmuCI GTSAC 1 cut(s) 481
NotI GCGGCCGC 1 cut(s) 252
NsbI TGCGCA 1 cut(s) 1392
NsiI ATGCAT 1 cut(s) 525
NspI RCATGY 2 cut(s) 611, 1382
NspV TTCGAA 2 cut(s) 422, 582
PaeI GCATGC 1 cut(s) 611
PagI TCATGA 1 cut(s) 793
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 380
PdmI GAANNNNTTC 1 cut(s) 514
PflFI GACNNNGTC 1 cut(s) 1175
PkrI GCNGC 9 cut(s) 112, 161, 164, 243, 253, 256, 463, 646, 853
PleI GAGTC 1 cut(s) 1283
PpsI GAGTC 1 cut(s) 1283
Psp124BI GAGCTC 2 cut(s) 189, 300
PspFI CCCAGC 2 cut(s) 464, 1382
PspN4I GGNNCC 1 cut(s) 1186
PsuI RGATCY 1 cut(s) 369
PsyI GACNNNGTC 1 cut(s) 1175
PvuII CAGCTG 1 cut(s) 977
RseI CAYNNNNRTG 1 cut(s) 678
SacI GAGCTC 2 cut(s) 189, 300
SacII CCGCGG 1 cut(s) 160
SaqAI TTAA 1 cut(s) 800
SatI GCNGC 9 cut(s) 111, 160, 163, 242, 252, 255, 462, 645, 852
Sau3AI GATC 9 cut(s) 151, 289, 315, 345, 369, 414, 440, 953, 1228
SchI GAGTC 1 cut(s) 1283
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 4 cut(s) 189, 300, 714, 916
SfaNI GCATC 6 cut(s) 238, 532, 727, 730, 901, 1120
SfcI CTRYAG 1 cut(s) 1197
Sfr303I CCGCGG 1 cut(s) 160
SfuI TTCGAA 2 cut(s) 422, 582
SgrBI CCGCGG 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 678
SmlI CTYRAG 1 cut(s) 1232
SmoI CTYRAG 1 cut(s) 1232
SphI GCATGC 1 cut(s) 611
Sse9I AATT 4 cut(s) 424, 584, 867, 1023
SspMI CTAG 2 cut(s) 723, 1325
SstI GAGCTC 2 cut(s) 189, 300
StyD4I CCNGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 1175
TaiI ACGT 2 cut(s) 315, 628
TaqI TCGA 6 cut(s) 42, 374, 383, 422, 540, 582
TasI AATT 4 cut(s) 424, 584, 867, 1023
TauI GCSGC 7 cut(s) 113, 162, 165, 244, 254, 257, 464
Tru1I TTAA 1 cut(s) 800
Tru9I TTAA 1 cut(s) 800
TscAI CASTG 3 cut(s) 1062, 1083, 1231
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 2 cut(s) 644, 851
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 3 cut(s) 579, 1086, 1373
TspRI CASTG 3 cut(s) 1062, 1083, 1231
Tth111I GACNNNGTC 1 cut(s) 1175
XapI RAATTY 1 cut(s) 424
XceI RCATGY 2 cut(s) 611, 1382
XmiI GTMKAC 1 cut(s) 755
XmnI GAANNNNTTC 1 cut(s) 514
XspI CTAG 2 cut(s) 723, 1325
Zsp2I ATGCAT 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.