Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006687

Physical Location & Seq

Genomic Coordinates Reverse (-)

4695976 .. 4701817

Gene Structure 5842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05130.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGGTAACAACAAGCGGTTCAAGAACCATAAGCCTCACCGTGACCGGGGGCAATCTAGTCGGACCCATCACCATTTTCCACAGTCTGACGAATCCCTACCATCTGATCAAGGTCTCCAATTTATTTTCCATTTTTTCACGCAAGCTACTGAAGAGGAGCCAACAGCAACAGGTCCCAAAATCCAGCTTGCAATGTGGGATTTTGGCCAATGTGATGCAAAAAGATGCACAGGACGCAAGCTTTCAAGATTTGGCTTGTTGAAGGAATTGCGTGTCAATAATGGTTTTGGAGGCATTGTTTTGAGTCCAGTTGGGACGCTTTGTGTATCAAGAGAAGATTATAGTTTAATCCAGCAAAAAGGATTAGCTGTTGTGGATTGCTCTTGGGCACGCTTGGATGATGTACCATTTGTGAAGCTTCGTTGCACTGCTCCTCGCCTCTTGCCTTGGTTTGTAGCAGCAAATCCAGTAAATTATGGTCGACCCTGTCAACTATCTTGTGTGGAGGCATTATCTGCAGCTCTGTTCATATGTGGCGAAGAAGAAACTGCAAATTTGTTGCTTGGAAAGTTCAAATGGGGTCATGCTTTCCTGTCCCTCAATAGGGAACTTCTGAAGGCATACTCCAAATGTGAAAACAGTGCTGAAATAATTTCAGTCCAAAATGATTGGCTTTCACAAAACAGTCAGGTTCCCAAGGCTCCTAGGGAAGTAAAAGGAGGAGCAGACCTGTCCTCTCTCAGTGACGGTGCGGAGGGCTCTTGTGATTCCGACGACGGGCTTCCACCACTGGAAAGGAATATGAATCACTTAGACATGCAGGAAAGTGATGAAGAAAGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RLI Ribo_biogen_C

Protein Analysis

282

Amino Acids

31.28

Weight (kDa)

5.8

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10070 AT5G10070
fragaria_vesca	FvH4_1g21690 FvH4_1g21690 FvH4_1g21690 FvH4_1g21690
malus_domestica	MD01G1023100.v1.1 MD15G1329600.v1.1
prunus_persica	Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1
pyrus_communis	pycom01g05130 pycom15g29590
rosa_chinensis	RchiOBHm_Chr2g0115571
rosa_laevigata	RLG00000018194
rosa_multiflora	Rmu_sc0021766.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128100 Rroxscaffold_2G00128980
rosa_rugosa	Rorug02G0198100 Rorug02G0198200
rosa_samantha	Rh2AG255600 Rh2BG266300 Rh2CG260800 Rh2DG263800
rosa_wichuraiana	Rw2G019990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	481
AciI	CCGC	2 cut(s)	16, 752
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	553
AcuI	CTGAAG	2 cut(s)	171, 635
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	4 cut(s)	46, 603, 604, 777
AgsI	TTSAA	4 cut(s)	22, 246, 262, 574
AluBI	AGCT	6 cut(s)	146, 187, 241, 368, 418, 521
AluI	AGCT	6 cut(s)	146, 187, 241, 368, 418, 521
Alw26I	GTCTC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	2 cut(s)	458, 518
ApoI	RAATTY	1 cut(s)	553
AspA2I	CCTAGG	1 cut(s)	704
AspS9I	GGNCC	2 cut(s)	63, 173
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	29, 62
AvaII	GGWCC	2 cut(s)	63, 173
AvrII	CCTAGG	1 cut(s)	704
BaeGI	GKGCMC	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	761
BbvI	GCAGC	2 cut(s)	470, 530
BccI	CCATC	2 cut(s)	75, 109
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BclI	TGATCA	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	57, 705
BfmI	CTRYAG	1 cut(s)	516
BisI	GCNGC	2 cut(s)	459, 519
BlnI	CCTAGG	1 cut(s)	704
BlsI	GCNGC	2 cut(s)	460, 520
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	2 cut(s)	63, 173
BmgT120I	GGNCC	2 cut(s)	63, 173
BmiI	GGNNCC	5 cut(s)	65, 159, 175, 693, 702
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	2 cut(s)	205, 215
BpuMI	CCSGG	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	4 cut(s)	46, 446, 696, 704
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 603, 604, 777
Bse1I	ACTGG	3 cut(s)	308, 467, 795
Bse3DI	GCAATG	1 cut(s)	198
BseDI	CCNNGG	4 cut(s)	46, 446, 696, 704
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	4 cut(s)	46, 603, 604, 777
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	754
BseNI	ACTGG	3 cut(s)	308, 467, 795
BseRI	GAGGAG	3 cut(s)	170, 423, 735
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	2 cut(s)	470, 530
BshFI	GGCC	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	46
BslFI	GGGAC	3 cut(s)	159, 328, 580
BslI	CCNNNNNNNGG	4 cut(s)	46, 603, 604, 777
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	3 cut(s)	159, 328, 580
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	391, 761
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	2 cut(s)	16, 752
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	753
BspLI	GGNNCC	5 cut(s)	65, 159, 175, 693, 702
BspMAI	CTGCAG	1 cut(s)	520
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	3 cut(s)	308, 467, 795
BssECI	CCNNGG	4 cut(s)	46, 446, 696, 704
BssMI	GATC	1 cut(s)	106
BssT1I	CCWWGG	3 cut(s)	446, 696, 704
Bst4CI	ACNGT	5 cut(s)	41, 84, 641, 686, 749
Bst6I	CTCTTC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstC8I	GCNNGC	4 cut(s)	144, 189, 239, 391
BstDEI	CTNAG	2 cut(s)	740, 811
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	234, 515
BstNSI	RCATGY	1 cut(s)	820
BstSCI	CCNGG	1 cut(s)	45
BstSFI	CTRYAG	1 cut(s)	516
BstSLI	GKGCMC	1 cut(s)	391
BstV1I	GCAGC	2 cut(s)	470, 530
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	403
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	4 cut(s)	426, 646, 748, 788
Cac8I	GCNNGC	4 cut(s)	144, 189, 239, 391
Cfr13I	GGNCC	2 cut(s)	63, 173
CseI	GACGC	2 cut(s)	243, 325
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	2 cut(s)	584, 817
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	2 cut(s)	740, 811
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	3 cut(s)	446, 696, 704
Eco24I	GRGCYC	1 cut(s)	761
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	2 cut(s)	63, 173
Eco57I	CTGAAG	2 cut(s)	171, 635
EcoO109I	RGGNCCY	1 cut(s)	173
EcoT14I	CCWWGG	3 cut(s)	446, 696, 704
EcoT38I	GRGCYC	1 cut(s)	761
ErhI	CCWWGG	3 cut(s)	446, 696, 704
FaeI	CATG	2 cut(s)	587, 820
FaiI	YATR	9 cut(s)	30, 342, 477, 530, 532, 585, 622, 803, 818
FaqI	GGGAC	3 cut(s)	159, 328, 580
FatI	CATG	2 cut(s)	583, 816
FauNDI	CATATG	1 cut(s)	530
FbaI	TGATCA	1 cut(s)	106
FblI	GTMKAC	1 cut(s)	481
Fnu4HI	GCNGC	2 cut(s)	459, 519
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	1 cut(s)	761
Fsp4HI	GCNGC	2 cut(s)	459, 519
FspBI	CTAG	2 cut(s)	57, 705
GluI	GCNGC	2 cut(s)	459, 519
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	1 cut(s)	46
HgaI	GACGC	2 cut(s)	243, 325
Hin1II	CATG	2 cut(s)	587, 820
HincII	GTYRAC	2 cut(s)	482, 491
HindII	GTYRAC	2 cut(s)	482, 491
HindIII	AAGCTT	2 cut(s)	239, 416
HinfI	GANTC	4 cut(s)	92, 304, 767, 805
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	2 cut(s)	29, 62
Hpy166II	GTNNAC	2 cut(s)	482, 491
Hpy188I	TCNGA	5 cut(s)	63, 88, 106, 615, 772
Hpy188III	TCNNGA	3 cut(s)	22, 246, 330
Hpy8I	GTNNAC	2 cut(s)	482, 491
Hpy99I	CGWCG	2 cut(s)	776, 779
HpyAV	CCTTC	2 cut(s)	256, 610
HpyCH4III	ACNGT	5 cut(s)	41, 84, 641, 686, 749
HpyCH4V	TGCA	7 cut(s)	191, 218, 228, 426, 518, 551, 820
HpyF10VI	GCNNNNNNNGC	2 cut(s)	234, 515
HpyF3I	CTNAG	2 cut(s)	740, 811
Hsp92II	CATG	2 cut(s)	587, 820
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	4 cut(s)	157, 436, 706, 722
Lsp1109I	GCAGC	2 cut(s)	470, 530
LweI	GCATC	2 cut(s)	205, 215
MaeI	CTAG	2 cut(s)	57, 705
MaeIII	GTNAC	3 cut(s)	5, 41, 743
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	5 cut(s)	164, 347, 551, 554, 845
MhlI	GDGCHC	2 cut(s)	391, 761
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	5 cut(s)	119, 266, 472, 553, 651
MluNI	TGGCCA	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	2 cut(s)	41, 795
Mox20I	TGGCCA	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	1 cut(s)	347
Msp20I	TGGCCA	1 cut(s)	207
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	234, 515
NciI	CCSGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	530
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	587, 820
NlaIV	GGNNCC	5 cut(s)	65, 159, 175, 693, 702
NmuCI	GTSAC	2 cut(s)	41, 743
NspI	RCATGY	1 cut(s)	820
PfeI	GAWTC	3 cut(s)	92, 767, 805
PflFI	GACNNNGTC	1 cut(s)	486
PkrI	GCNGC	2 cut(s)	460, 520
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
PpuMI	RGGWCCY	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	173
PspN4I	GGNNCC	5 cut(s)	65, 159, 175, 693, 702
PspPI	GGNCC	2 cut(s)	63, 173
PspPPI	RGGWCCY	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	520
PsyI	GACNNNGTC	1 cut(s)	486
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SalI	GTCGAC	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	2 cut(s)	459, 519
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	2 cut(s)	63, 173
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	2 cut(s)	391, 761
SfaNI	GCATC	2 cut(s)	205, 215
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	2 cut(s)	63, 173
Sse9I	AATT	5 cut(s)	119, 266, 472, 553, 651
SsiI	CCGC	2 cut(s)	16, 752
SspMI	CTAG	2 cut(s)	57, 705
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	3 cut(s)	446, 696, 704
TaaI	ACNGT	5 cut(s)	41, 84, 641, 686, 749
TaqI	TCGA	1 cut(s)	481
TasI	AATT	5 cut(s)	119, 266, 472, 553, 651
TfiI	GAWTC	3 cut(s)	92, 767, 805
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TscAI	CASTG	4 cut(s)	433, 646, 748, 795
TseFI	GTSAC	2 cut(s)	41, 743
TseI	GCWGC	2 cut(s)	458, 518
Tsp45I	GTSAC	2 cut(s)	41, 743
TspDTI	ATGAA	3 cut(s)	517, 818, 846
TspRI	CASTG	4 cut(s)	433, 646, 748, 795
Tth111I	GACNNNGTC	1 cut(s)	486
VpaK11BI	GGWCC	2 cut(s)	63, 173
XapI	RAATTY	1 cut(s)	553
XceI	RCATGY	1 cut(s)	820
XmaJI	CCTAGG	1 cut(s)	704
XmiI	GTMKAC	1 cut(s)	481
XspI	CTAG	2 cut(s)	57, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.