AT5G10110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011893
Physical Location & Seq
Reverse (-)
3166343 .. 3168346
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G10110.1

Sequence Viewer

Length: 966 bp
ATGACTGAAGATAGCAGCAAATCAGTGTCGGAACAAACCCGACCCGTTTTGAGTGATTTGACGAATCTTCCAAAGAAAAGAGGGATTTCATCGATTTTGGGTGATTTGCTTGATGAATCTGGTAAGACCGTTGCTCATGAAGTTTCAAAAGAGAAGTTTTCAAAGAGGTTGTGTTTAGTCGTAGATGATTTGGTTAAGGAAAATGCTACACCTTTGGATACAATTCAAGGGTCTTGTTCGTTTGATAAGAATACTTCTGGTGATGCTGTTGACAAAGAAGAGTATCATGATGCTGTAATGGAATTCTCCAGTGGAGATTGCAAAGCATTGAAGGAAAGCAAGTCTATACAGATCTATTTTGAACCTGGTGATAGAGACGGTGCACGAGAGTTAAACGCAGCTGCTAATGCGGATCAAACCGATGTTACTGGTGGAGAAGGCTTGGCTTTATCTTTGTTAACTAGCGATACCGAGAGCCGGAATCTACTGAAGACTGGGAAGGAGTTGTCTGATTGTCAGAATTTGAGATCATTTGAAATGAGTAGATGCTCCAATGTTAAGAATAAGGAGCATGTGAATCTGAATACAGGAGATGACTTGCTTAGATCATGCTGTTGTTCATTCTGTCTCACAGCTTCGTATATTTGGTCAGATCTTAATTACCAGGATAGCAAAGGACGATTATCCGCCATGAAGAAGAGTCAGAAAGCAGCTAGCAACTTGATTCAAGGGAATGTTAAAGAAAGATCTACAGATTTTCATGCCACGGGAAACTCAGTTTCTGCAAAACAAGAATCCAAGCTCATGGCCCAGTGGAGGTCGCTCTTTCTTAGCATGGGCGATATCCTCAGTGAAGAGAGTAGCCACCTTCAAAACAGCTTTGTGAGAATGAAAAAATTGCGAGACGATTGCAAGATGGATTTAGAGAGAGCAATGAAAAAACCTCAACAACACAACACCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

35.57

Weight (kDa)

5.79

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10110 AT5G65120 AT5G65120
fragaria_vesca FvH4_1g21240
malus_domestica MD01G1027000.v1.1 MD15G1327000.v1.1
prunus_persica Prupe.6G182000_v2.0.a1 Prupe.6G182000_v2.0.a1
pyrus_communis pycom01g05490 pycom395g00050
rosa_chinensis RchiOBHm_Chr2g0115081
rosa_laevigata RLG00000018155
rosa_multiflora Rmu_sc0002784.1_g000001
rosa_roxburghii Rroxscaffold_2G00130550
rosa_rugosa Rorug02G0193200
rosa_samantha Rh2AG251700 Rh2BG261200 Rh2DG259800
rosa_wichuraiana Rw2G019630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 410, 687
AclWI GGATC 1 cut(s) 420
AcsI RAATTY 2 cut(s) 302, 520
AcuI CTGAAG 2 cut(s) 27, 509
AfiI CCNNNNNNNGG 2 cut(s) 477, 816
AgsI TTSAA 8 cut(s) 147, 162, 227, 331, 362, 536, 728, 872
AjnI CCWGG 2 cut(s) 364, 663
AluBI AGCT 5 cut(s) 401, 635, 713, 802, 879
AluI AGCT 5 cut(s) 401, 635, 713, 802, 879
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 3 cut(s) 369, 632, 897
Alw44I GTGCAC 1 cut(s) 381
AlwI GGATC 1 cut(s) 420
AlwNI CAGNNNCTG 1 cut(s) 782
AoxI GGCC 1 cut(s) 807
ApaLI GTGCAC 1 cut(s) 381
ApeKI GCWGC 4 cut(s) 15, 398, 401, 710
ApoI RAATTY 2 cut(s) 302, 520
AspS9I GGNCC 1 cut(s) 808
AsuHPI GGTGA 3 cut(s) 113, 272, 380
AsuNHI GCTAGC 1 cut(s) 713
BaeGI GKGCMC 1 cut(s) 385
BauI CACGAG 1 cut(s) 384
BbsI GAAGAC 1 cut(s) 497
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 4 cut(s) 27, 388, 410, 722
BccI CCATC 1 cut(s) 910
BcgI CGANNNNNNTGC 2 cut(s) 891, 925
BciT130I CCWGG 2 cut(s) 366, 665
BciVI GTATCC 1 cut(s) 211
BcoDI GTCTC 3 cut(s) 369, 632, 897
BfaI CTAG 2 cut(s) 462, 714
BfmI CTRYAG 1 cut(s) 750
BfuI GTATCC 1 cut(s) 211
BglII AGATCT 3 cut(s) 351, 652, 746
BisI GCNGC 4 cut(s) 16, 399, 402, 711
BlsI GCNGC 4 cut(s) 17, 400, 403, 712
Bme1390I CCNGG 2 cut(s) 366, 665
BmgT120I GGNCC 1 cut(s) 808
BmrFI CCNGG 2 cut(s) 366, 665
BmrI ACTGGG 3 cut(s) 504, 805, 955
BmsI GCATC 3 cut(s) 253, 280, 536
BmtI GCTAGC 1 cut(s) 717
BmuI ACTGGG 3 cut(s) 504, 805, 955
BpiI GAAGAC 1 cut(s) 497
BpmI CTGGAG 1 cut(s) 292
Bsa29I ATCGAT 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 765
Bsc4I CCNNNNNNNGG 2 cut(s) 477, 816
Bse1I ACTGG 5 cut(s) 309, 433, 499, 811, 961
Bse3DI GCAATG 1 cut(s) 939
BseBI CCWGG 2 cut(s) 366, 665
BseCI ATCGAT 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 765
BseLI CCNNNNNNNGG 2 cut(s) 477, 816
BseMI GCAATG 1 cut(s) 939
BseMII CTCAG 2 cut(s) 789, 862
BseNI ACTGG 5 cut(s) 309, 433, 499, 811, 961
BseSI GKGCMC 1 cut(s) 385
BseXI GCAGC 4 cut(s) 27, 388, 410, 722
BshFI GGCC 1 cut(s) 809
BshVI ATCGAT 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 385
BsiSI CCGG 1 cut(s) 478
BslI CCNNNNNNNGG 2 cut(s) 477, 816
BsmAI GTCTC 3 cut(s) 369, 632, 897
BsmBI CGTCTC 2 cut(s) 369, 897
BsnI GGCC 1 cut(s) 809
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 6 cut(s) 351, 412, 527, 605, 652, 746
BspACI CCGC 2 cut(s) 410, 687
BspANI GGCC 1 cut(s) 809
BspCNI CTCAG 2 cut(s) 788, 861
BspDI ATCGAT 1 cut(s) 92
BspHI TCATGA 2 cut(s) 136, 286
BspOI GCTAGC 1 cut(s) 717
BspPI GGATC 1 cut(s) 420
BsrDI GCAATG 1 cut(s) 939
BsrI ACTGG 5 cut(s) 309, 433, 499, 811, 961
BssECI CCNNGG 1 cut(s) 765
BssMI GATC 6 cut(s) 351, 412, 527, 605, 652, 746
BssSI CACGAG 1 cut(s) 384
Bst2BI CACGAG 1 cut(s) 384
Bst2UI CCWGG 2 cut(s) 366, 665
Bst4CI ACNGT 2 cut(s) 130, 380
Bst6I CTCTTC 3 cut(s) 273, 692, 849
BstC8I GCNNGC 1 cut(s) 715
BstDEI CTNAG 4 cut(s) 602, 775, 830, 848
BstDSI CCRYGG 1 cut(s) 765
BstKTI GATC 6 cut(s) 354, 415, 530, 608, 655, 749
BstMAI GTCTC 3 cut(s) 369, 632, 897
BstMBI GATC 6 cut(s) 351, 412, 527, 605, 652, 746
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstNI CCWGG 2 cut(s) 366, 665
BstNSI RCATGY 1 cut(s) 575
BstSCI CCNGG 2 cut(s) 364, 663
BstSFI CTRYAG 1 cut(s) 750
BstSLI GKGCMC 1 cut(s) 385
BstV1I GCAGC 4 cut(s) 27, 388, 410, 722
BstV2I GAAGAC 1 cut(s) 497
BstX2I RGATCY 3 cut(s) 351, 652, 746
BstXI CCANNNNNNTGG 1 cut(s) 805
BstYI RGATCY 3 cut(s) 351, 652, 746
Bsu15I ATCGAT 1 cut(s) 92
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 809
BsuTUI ATCGAT 1 cut(s) 92
BtgI CCRYGG 1 cut(s) 765
BtsIMutI CAGTG 4 cut(s) 30, 316, 818, 856
Cac8I GCNNGC 1 cut(s) 715
CaiI CAGNNNCTG 1 cut(s) 782
CciI TCATGA 2 cut(s) 136, 286
Cfr13I GGNCC 1 cut(s) 808
ClaI ATCGAT 1 cut(s) 92
CsiI ACCWGGT 1 cut(s) 364
CviAII CATG 8 cut(s) 137, 287, 572, 609, 691, 761, 805, 835
DdeI CTNAG 4 cut(s) 602, 775, 830, 848
DpnI GATC 6 cut(s) 353, 414, 529, 607, 654, 748
DpnII GATC 6 cut(s) 351, 412, 527, 605, 652, 746
Eam1104I CTCTTC 3 cut(s) 273, 692, 849
EarI CTCTTC 3 cut(s) 273, 692, 849
EciI GGCGGA 1 cut(s) 676
Eco32I GATATC 1 cut(s) 844
Eco57I CTGAAG 2 cut(s) 27, 509
EcoRI GAATTC 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 364, 663
EcoRV GATATC 1 cut(s) 844
Esp3I CGTCTC 2 cut(s) 369, 897
FaeI CATG 8 cut(s) 140, 290, 575, 612, 694, 764, 808, 838
FatI CATG 8 cut(s) 136, 286, 571, 608, 690, 760, 804, 834
Fnu4HI GCNGC 4 cut(s) 16, 399, 402, 711
Fsp4HI GCNGC 4 cut(s) 16, 399, 402, 711
FspBI CTAG 2 cut(s) 462, 714
GluI GCNGC 4 cut(s) 16, 399, 402, 711
GsuI CTGGAG 1 cut(s) 292
HaeIII GGCC 1 cut(s) 809
HapII CCGG 1 cut(s) 478
Hin1II CATG 8 cut(s) 140, 290, 575, 612, 694, 764, 808, 838
HincII GTYRAC 2 cut(s) 271, 459
HindII GTYRAC 2 cut(s) 271, 459
HinfI GANTC 7 cut(s) 64, 116, 481, 577, 700, 724, 794
HpaI GTTAAC 1 cut(s) 459
HpaII CCGG 1 cut(s) 478
HphI GGTGA 3 cut(s) 113, 272, 380
Hpy166II GTNNAC 3 cut(s) 271, 383, 459
Hpy188I TCNGA 6 cut(s) 31, 511, 519, 582, 652, 705
Hpy188III TCNNGA 2 cut(s) 137, 287
Hpy8I GTNNAC 3 cut(s) 271, 383, 459
HpyAV CCTTC 4 cut(s) 325, 431, 493, 878
HpyCH4III ACNGT 2 cut(s) 130, 380
HpyCH4V TGCA 4 cut(s) 321, 383, 785, 912
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 4 cut(s) 602, 775, 830, 848
Hsp92II CATG 8 cut(s) 140, 290, 575, 612, 694, 764, 808, 838
KspAI GTTAAC 1 cut(s) 459
Kzo9I GATC 6 cut(s) 351, 412, 527, 605, 652, 746
LmnI GCTCC 2 cut(s) 554, 568
Lsp1109I GCAGC 4 cut(s) 27, 388, 410, 722
LweI GCATC 3 cut(s) 253, 280, 536
MabI ACCWGGT 1 cut(s) 364
MaeI CTAG 2 cut(s) 462, 714
MaeIII GTNAC 1 cut(s) 424
MalI GATC 6 cut(s) 353, 414, 529, 607, 654, 748
MboI GATC 6 cut(s) 351, 412, 527, 605, 652, 746
MboII GAAGA 7 cut(s) 20, 59, 290, 502, 706, 709, 866
MflI RGATCY 3 cut(s) 351, 652, 746
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 5 cut(s) 222, 302, 520, 658, 896
MlyI GAGTC 1 cut(s) 709
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 5 cut(s) 74, 159, 810, 857, 954
MseI TTAA 6 cut(s) 195, 392, 458, 558, 657, 738
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 1 cut(s) 478
MspR9I CCNGG 2 cut(s) 366, 665
MvaI CCWGG 2 cut(s) 366, 665
MwoI GCNNNNNNNGC 1 cut(s) 407
NdeII GATC 6 cut(s) 351, 412, 527, 605, 652, 746
NheI GCTAGC 1 cut(s) 713
NlaIII CATG 8 cut(s) 140, 290, 575, 612, 694, 764, 808, 838
NspI RCATGY 1 cut(s) 575
PagI TCATGA 2 cut(s) 136, 286
PfeI GAWTC 6 cut(s) 64, 116, 481, 577, 724, 794
PkrI GCNGC 4 cut(s) 17, 400, 403, 712
PleI GAGTC 1 cut(s) 708
PpsI GAGTC 1 cut(s) 708
Psp6I CCWGG 2 cut(s) 364, 663
PspGI CCWGG 2 cut(s) 364, 663
PspPI GGNCC 1 cut(s) 808
PstNI CAGNNNCTG 1 cut(s) 782
PsuI RGATCY 3 cut(s) 351, 652, 746
PvuII CAGCTG 1 cut(s) 401
SaqAI TTAA 6 cut(s) 195, 392, 458, 558, 657, 738
SatI GCNGC 4 cut(s) 16, 399, 402, 711
Sau3AI GATC 6 cut(s) 351, 412, 527, 605, 652, 746
Sau96I GGNCC 1 cut(s) 808
SchI GAGTC 1 cut(s) 709
ScrFI CCNGG 2 cut(s) 366, 665
SduI GDGCHC 1 cut(s) 385
SexAI ACCWGGT 1 cut(s) 364
SfaNI GCATC 3 cut(s) 253, 280, 536
SfcI CTRYAG 1 cut(s) 750
Sse9I AATT 5 cut(s) 222, 302, 520, 658, 896
SsiI CCGC 2 cut(s) 410, 687
SspMI CTAG 2 cut(s) 462, 714
StyD4I CCNGG 2 cut(s) 364, 663
TaaI ACNGT 2 cut(s) 130, 380
TaqI TCGA 1 cut(s) 92
TasI AATT 5 cut(s) 222, 302, 520, 658, 896
TfiI GAWTC 6 cut(s) 64, 116, 481, 577, 724, 794
Tru1I TTAA 6 cut(s) 195, 392, 458, 558, 657, 738
Tru9I TTAA 6 cut(s) 195, 392, 458, 558, 657, 738
TscAI CASTG 4 cut(s) 30, 316, 818, 856
TseI GCWGC 4 cut(s) 15, 398, 401, 710
TspDTI ATGAA 8 cut(s) 78, 129, 153, 609, 707, 749, 905, 950
TspRI CASTG 4 cut(s) 30, 316, 818, 856
VneI GTGCAC 1 cut(s) 381
XapI RAATTY 2 cut(s) 302, 520
XceI RCATGY 1 cut(s) 575
XspI CTAG 2 cut(s) 462, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.