Rmu_sc0002784.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002784.1
OG0011893
Physical Location & Seq
Reverse (-)
1 .. 2547
2547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002784.1_g000001.1.cds

Sequence Viewer

Length: 1076 bp
atgagcaaagataattcagcagatgggtcttgcaaaacccgttcagctcttggtgatttgaccaatcggcccctcaaaagggggttttcgaagatttctgccgattctgaaccgaaatctggagatgggtatgggggaaatgtgggttgtagagatggagtttcgagtaaattggcaaagcaagtgtctttgggggatgagaatatggttcgagagaaattaggggaagattgtaaccctaaaggtttatcttcgccaaaggggatgccagattctgtgatttcacccacttgcagtgcaggggattcgacgaatgacaacaatgcatctgttgttgtgcttgatgatgacattgaagaaaagtccaacgacagtgtaatggaagttggtgatgcgtcgagggataattgcttgtcggtagcttcaatgtccacatgctcagagctgtgcaagaatggctgctgtgatggcggtgggaaatgtcaatatgagaaaccgggacagacctctgatgatgctcagagcactcctacatgtgaaggattaggcaatgttgttcccaagaatgatgaaagggatcctggtgtttgcaaagtgggtgcgactaaatatggctctaccgagtggtctaagatgcctacctcactgggttcttcaatggcaagatgcacaactgttaatagtgctgctgatttgaatgcaggcgatgacttcctcaatgattgctcttgttcattttgcttgcaagctgctcacattctgtcagacctccaatatcaggatataaagggtcgaatttctgctttaaagaagagtcaaaaagaagccggcatattggttcagaaaagttttaggggaaaggagattgatcctaagggaccacggtacgcaaacaaaacatcaaaacttgaatctgatctctcaagtcagtggagatcactctttcttcacatggaggatatcttcgtaaatgaaggcaaccaccttcacgacaaatttgtcacgctaaaagatttgagagacaactgcaagatggaactggaaacagctgttggagtgccctcagagagactgta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

358

Amino Acids

38.28

Weight (kDa)

5.1

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10110 AT5G65120 AT5G65120
fragaria_vesca FvH4_1g21240
malus_domestica MD01G1027000.v1.1 MD15G1327000.v1.1
prunus_persica Prupe.6G182000_v2.0.a1 Prupe.6G182000_v2.0.a1
pyrus_communis pycom01g05490 pycom395g00050
rosa_chinensis RchiOBHm_Chr2g0115081
rosa_laevigata RLG00000018155
rosa_multiflora Rmu_sc0002784.1_g000001
rosa_roxburghii Rroxscaffold_2G00130550
rosa_rugosa Rorug02G0193200
rosa_samantha Rh2AG251700 Rh2BG261200 Rh2DG259800
rosa_wichuraiana Rw2G019630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 998
AciI CCGC 1 cut(s) 471
AclWI GGATC 3 cut(s) 572, 585, 863
AcsI RAATTY 2 cut(s) 795, 995
AfaI GTAC 1 cut(s) 887
AfiI CCNNNNNNNGG 4 cut(s) 78, 79, 119, 778
AflIII ACRYGT 1 cut(s) 533
AgsI TTSAA 5 cut(s) 356, 426, 657, 697, 911
AjnI CCWGG 1 cut(s) 580
AjuI GAANNNNNNNTTGG 2 cut(s) 1035, 1067
AluBI AGCT 5 cut(s) 47, 422, 445, 749, 1049
AluI AGCT 5 cut(s) 47, 422, 445, 749, 1049
Alw21I GWGCWC 1 cut(s) 527
Alw26I GTCTC 2 cut(s) 1014, 1063
AlwI GGATC 3 cut(s) 572, 585, 863
AlwNI CAGNNNCTG 1 cut(s) 275
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 3 cut(s) 459, 686, 749
ApoI RAATTY 2 cut(s) 795, 995
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AspS9I GGNCC 2 cut(s) 69, 878
AsuC2I CCSGG 1 cut(s) 498
AsuHPI GGTGA 3 cut(s) 65, 276, 401
AsuII TTCGAA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 878
AxyI CCTNAGG 1 cut(s) 873
BaeGI GKGCMC 1 cut(s) 1062
BamHI GGATCC 1 cut(s) 577
Bbv12I GWGCWC 1 cut(s) 527
BbvI GCAGC 3 cut(s) 446, 673, 736
BccI CCATC 5 cut(s) 17, 119, 149, 461, 1027
BcgI CGANNNNNNTGC 2 cut(s) 288, 322
BciT130I CCWGG 1 cut(s) 582
BcnI CCSGG 1 cut(s) 498
BcoDI GTCTC 2 cut(s) 1014, 1063
BisI GCNGC 3 cut(s) 460, 687, 750
BlsI GCNGC 3 cut(s) 461, 688, 751
Bme1390I CCNGG 2 cut(s) 498, 582
Bme18I GGWCC 1 cut(s) 878
BmgT120I GGNCC 2 cut(s) 69, 878
BmiI GGNNCC 3 cut(s) 71, 579, 879
BmrFI CCNGG 2 cut(s) 498, 582
BmrI ACTGGG 1 cut(s) 656
BmsI GCATC 6 cut(s) 255, 335, 382, 505, 624, 656
BmuI ACTGGG 1 cut(s) 656
BpmI CTGGAG 1 cut(s) 141
Bpu14I TTCGAA 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 907
BpuMI CCSGG 1 cut(s) 498
BsaJI CCNNGG 1 cut(s) 881
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 79, 119, 778
Bse118I RCCGGY 1 cut(s) 827
Bse1I ACTGG 2 cut(s) 651, 1044
Bse21I CCTNAGG 1 cut(s) 873
Bse3DI GCAATG 1 cut(s) 556
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 1 cut(s) 881
BseGI GGATG 2 cut(s) 202, 270
BseLI CCNNNNNNNGG 4 cut(s) 78, 79, 119, 778
BseMI GCAATG 1 cut(s) 556
BseMII CTCAG 2 cut(s) 453, 533
BseNI ACTGG 2 cut(s) 651, 1044
BseSI GKGCMC 1 cut(s) 1062
BseXI GCAGC 3 cut(s) 446, 673, 736
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 527
BsiSI CCGG 2 cut(s) 497, 828
BslFI GGGAC 2 cut(s) 513, 891
BslI CCNNNNNNNGG 4 cut(s) 78, 79, 119, 778
BsmAI GTCTC 2 cut(s) 1014, 1063
BsmFI GGGAC 2 cut(s) 513, 891
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 1 cut(s) 70
Bsp119I TTCGAA 1 cut(s) 89
Bsp1286I GDGCHC 2 cut(s) 527, 1062
Bsp143I GATC 4 cut(s) 577, 868, 916, 935
BspACI CCGC 1 cut(s) 471
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 3 cut(s) 452, 532, 1076
BspLI GGNNCC 3 cut(s) 71, 579, 879
BspPI GGATC 3 cut(s) 572, 585, 863
BspT104I TTCGAA 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 556
BsrFI RCCGGY 1 cut(s) 827
BsrI ACTGG 2 cut(s) 651, 1044
BssAI RCCGGY 1 cut(s) 827
BssECI CCNNGG 1 cut(s) 881
BssMI GATC 4 cut(s) 577, 868, 916, 935
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 4 cut(s) 374, 676, 885, 1074
Bst6I CTCTTC 1 cut(s) 806
BstBI TTCGAA 1 cut(s) 89
BstC8I GCNNGC 4 cut(s) 703, 743, 747, 829
BstDEI CTNAG 5 cut(s) 439, 519, 630, 873, 1063
BstDSI CCRYGG 1 cut(s) 881
BstF5I GGATG 2 cut(s) 202, 270
BstKTI GATC 4 cut(s) 580, 871, 919, 938
BstMAI GTCTC 2 cut(s) 1014, 1063
BstMBI GATC 4 cut(s) 577, 868, 916, 935
BstMWI GCNNNNNNNGC 2 cut(s) 456, 468
BstNI CCWGG 1 cut(s) 582
BstNSI RCATGY 2 cut(s) 438, 537
BstSCI CCNGG 2 cut(s) 496, 580
BstSLI GKGCMC 1 cut(s) 1062
BstV1I GCAGC 3 cut(s) 446, 673, 736
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
Bsu36I CCTNAGG 1 cut(s) 873
BsuRI GGCC 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 881
BtgZI GCGATG 1 cut(s) 720
BtsCI GGATG 2 cut(s) 202, 270
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 4 cut(s) 301, 379, 644, 935
Cac8I GCNNGC 4 cut(s) 703, 743, 747, 829
CaiI CAGNNNCTG 1 cut(s) 275
Cfr10I RCCGGY 1 cut(s) 827
Cfr13I GGNCC 2 cut(s) 69, 878
CseI GACGC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 886
CviAII CATG 3 cut(s) 435, 534, 952
CviJI RGCY 9 cut(s) 47, 70, 422, 445, 459, 615, 749, 827, 1049
CviKI_1 RGCY 9 cut(s) 47, 70, 422, 445, 459, 615, 749, 827, 1049
CviQI GTAC 1 cut(s) 886
DdeI CTNAG 5 cut(s) 439, 519, 630, 873, 1063
DpnI GATC 4 cut(s) 579, 870, 918, 937
DpnII GATC 4 cut(s) 577, 868, 916, 935
DraI TTTAAA 1 cut(s) 807
DrdI GACNNNNNNGTC 1 cut(s) 998
DseDI GACNNNNNNGTC 1 cut(s) 998
Eam1104I CTCTTC 1 cut(s) 806
EarI CTCTTC 1 cut(s) 806
Eco32I GATATC 1 cut(s) 961
Eco47I GGWCC 1 cut(s) 878
Eco81I CCTNAGG 1 cut(s) 873
EcoRII CCWGG 1 cut(s) 580
EcoRV GATATC 1 cut(s) 961
EcoT22I ATGCAT 1 cut(s) 328
FaeI CATG 3 cut(s) 438, 537, 955
FaiI YATR 9 cut(s) 132, 206, 436, 489, 535, 612, 785, 833, 953
FaqI GGGAC 2 cut(s) 513, 891
FatI CATG 3 cut(s) 434, 533, 951
Fnu4HI GCNGC 3 cut(s) 460, 687, 750
FokI GGATG 2 cut(s) 209, 277
Fsp4HI GCNGC 3 cut(s) 460, 687, 750
GluI GCNGC 3 cut(s) 460, 687, 750
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 1 cut(s) 70
HapII CCGG 2 cut(s) 497, 828
HgaI GACGC 1 cut(s) 384
Hin1II CATG 3 cut(s) 438, 537, 955
HinfI GANTC 5 cut(s) 104, 272, 305, 814, 911
HpaII CCGG 2 cut(s) 497, 828
HphI GGTGA 3 cut(s) 65, 276, 401
Hpy166II GTNNAC 1 cut(s) 432
Hpy188I TCNGA 8 cut(s) 109, 442, 511, 522, 766, 843, 916, 1066
Hpy188III TCNNGA 4 cut(s) 120, 212, 779, 989
Hpy8I GTNNAC 1 cut(s) 432
Hpy99I CGWCG 2 cut(s) 313, 400
HpyAV CCTTC 3 cut(s) 533, 968, 995
HpyCH4III ACNGT 4 cut(s) 374, 676, 885, 1074
HpyF10VI GCNNNNNNNGC 2 cut(s) 456, 468
HpyF3I CTNAG 5 cut(s) 439, 519, 630, 873, 1063
Hsp92II CATG 3 cut(s) 438, 537, 955
KroI GCCGGC 1 cut(s) 827
KroNI GCCGGC 1 cut(s) 829
Kzo9I GATC 4 cut(s) 577, 868, 916, 935
Lsp1109I GCAGC 3 cut(s) 446, 673, 736
LweI GCATC 6 cut(s) 255, 335, 382, 505, 624, 656
MaeIII GTNAC 2 cut(s) 233, 1000
MalI GATC 4 cut(s) 579, 870, 918, 937
MboI GATC 4 cut(s) 577, 868, 916, 935
MboII GAAGA 8 cut(s) 103, 239, 243, 368, 645, 823, 938, 955
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 2 cut(s) 527, 1062
MluCI AATT 6 cut(s) 13, 170, 218, 406, 795, 995
MlyI GAGTC 1 cut(s) 823
MmeI TCCRAC 2 cut(s) 390, 1033
MnlI CCTC 8 cut(s) 83, 393, 517, 652, 725, 779, 949, 1072
Mph1103I ATGCAT 1 cut(s) 328
MroNI GCCGGC 1 cut(s) 827
MseI TTAA 2 cut(s) 678, 806
MspA1I CMGCKG 1 cut(s) 1049
MspI CCGG 2 cut(s) 497, 828
MspR9I CCNGG 2 cut(s) 498, 582
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 1 cut(s) 582
MwoI GCNNNNNNNGC 2 cut(s) 456, 468
NaeI GCCGGC 1 cut(s) 829
NciI CCSGG 1 cut(s) 498
NdeII GATC 4 cut(s) 577, 868, 916, 935
NgoMIV GCCGGC 1 cut(s) 827
NlaIII CATG 3 cut(s) 438, 537, 955
NlaIV GGNNCC 3 cut(s) 71, 579, 879
NmuCI GTSAC 1 cut(s) 1000
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 2 cut(s) 438, 537
NspV TTCGAA 1 cut(s) 89
PciI ACATGT 1 cut(s) 533
PctI GAATGC 1 cut(s) 703
PdiI GCCGGC 1 cut(s) 829
PfeI GAWTC 4 cut(s) 104, 272, 305, 911
PkrI GCNGC 3 cut(s) 461, 688, 751
PleI GAGTC 1 cut(s) 822
PpsI GAGTC 1 cut(s) 822
PscI ACATGT 1 cut(s) 533
Psp6I CCWGG 1 cut(s) 580
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 3 cut(s) 71, 579, 879
PspPI GGNCC 2 cut(s) 69, 878
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 1 cut(s) 577
PvuII CAGCTG 1 cut(s) 1049
RsaI GTAC 1 cut(s) 887
RsaNI GTAC 1 cut(s) 886
SaqAI TTAA 2 cut(s) 678, 806
SatI GCNGC 3 cut(s) 460, 687, 750
Sau3AI GATC 4 cut(s) 577, 868, 916, 935
Sau96I GGNCC 2 cut(s) 69, 878
SchI GAGTC 1 cut(s) 823
ScrFI CCNGG 2 cut(s) 498, 582
SduI GDGCHC 2 cut(s) 527, 1062
SfaNI GCATC 6 cut(s) 255, 335, 382, 505, 624, 656
SfuI TTCGAA 1 cut(s) 89
SinI GGWCC 1 cut(s) 878
SmlI CTYRAG 1 cut(s) 922
SmoI CTYRAG 1 cut(s) 922
Sse9I AATT 6 cut(s) 13, 170, 218, 406, 795, 995
SsiI CCGC 1 cut(s) 471
StyD4I CCNGG 2 cut(s) 496, 580
TaaI ACNGT 4 cut(s) 374, 676, 885, 1074
TaqI TCGA 6 cut(s) 89, 164, 211, 308, 398, 793
TasI AATT 6 cut(s) 13, 170, 218, 406, 795, 995
TfiI GAWTC 4 cut(s) 104, 272, 305, 911
Tru1I TTAA 2 cut(s) 678, 806
Tru9I TTAA 2 cut(s) 678, 806
TscAI CASTG 4 cut(s) 301, 379, 651, 935
TseFI GTSAC 1 cut(s) 1000
TseI GCWGC 3 cut(s) 459, 686, 749
Tsp45I GTSAC 1 cut(s) 1000
TspDTI ATGAA 3 cut(s) 585, 723, 987
TspRI CASTG 4 cut(s) 301, 379, 651, 935
VpaK11BI GGWCC 1 cut(s) 878
XapI RAATTY 2 cut(s) 795, 995
XceI RCATGY 2 cut(s) 438, 537
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.