AT5G65120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011893
Physical Location & Seq
Forward (+)
26012775 .. 26014739
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G65120.1

Sequence Viewer

Length: 954 bp
ATGACTGGAGATTGGTGCAGCCTAGTAGTGTCCAAGGAAACACGTGTCGCATTGTGTGATATGACTAACCTTCCAAGCAAGAGAGGGCTTTCAGCGATTTTGGGAGATTTGCTACTTAAATCTGGAGATGATTCTGGTAAGAGCCTTGCTGCTCGTGAAGGCTCCGGTGTTAAGTTTTCCAAGAGGTTGTGTTTAGTTGTTGACGACTTGGTCAAAGAGAGTACTAGGACTAGTGATACTAATGAAGCTTCTTCTTCTGAGGATAAGATTAGTTATGATTGTGATTCTGAGAATTTAGATGTCAAAGAATCTCAGGGTGAAACCAATGCCGGAGATATTGATGTGGAACCTTCTAAAGATGATACTGTGAAAGAGACGTGTGAGAAAGACTCGAACATGAATGTATGTGGCAGTCAAACCGATGCTGTTACTAGTGAAGACTTAGCTATGACTCTGTTTAGTAGCAACAATAATGAAAGTGAGGGTTTGTTAGTGCCTAATCCTCAGGCTATCAAATCGTTTAATATGAATAGATGTTCGAATGTTGACGGTATGGGAATTGTTAATCACCATATGGAAGCTGACGGCGAGCTTAAATCTTGCTCTTGTTCATTTTGCCTGACAGCTGCATATATCTGGTCAGATCTTCACTACCAGGATATCAAAGGTCGATTATCTGTGTTGAAGAAGAGCCAGAAAGAAGCTAGTGGCTTGATCCAAAGGAACGATAGAGGAACGCCAACGGATATTTATGGATCTGAAAACTCCAACAACTCCACAAATACAGATAATCCCATGGAACAATGGACATCTCTATTTCGTAACATGGAAGGTATCTTGGCTCGTGAAAGCAACCACCTCCACAATAGCTTTGTAGCCATGAAAGAGTTGAGAGAAAATTGCAAGATTGATCTGGAGAGAGCGACGAAAACATCTCAACAAAACAACACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

317

Amino Acids

34.8

Weight (kDa)

4.76

Isoelectric Point (pI)

28.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10110 AT5G65120 AT5G65120
fragaria_vesca FvH4_1g21240
malus_domestica MD01G1027000.v1.1 MD15G1327000.v1.1
prunus_persica Prupe.6G182000_v2.0.a1 Prupe.6G182000_v2.0.a1
pyrus_communis pycom01g05490 pycom395g00050
rosa_chinensis RchiOBHm_Chr2g0115081
rosa_laevigata RLG00000018155
rosa_multiflora Rmu_sc0002784.1_g000001
rosa_roxburghii Rroxscaffold_2G00130550
rosa_rugosa Rorug02G0193200
rosa_samantha Rh2AG251700 Rh2BG261200 Rh2DG259800
rosa_wichuraiana Rw2G019630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AclWI GGATC 2 cut(s) 709, 763
AcsI RAATTY 1 cut(s) 292
AcvI CACGTG 1 cut(s) 44
AfaI GTAC 1 cut(s) 223
AflIII ACRYGT 3 cut(s) 41, 43, 377
AgsI TTSAA 1 cut(s) 685
AhlI ACTAGT 2 cut(s) 230, 431
AjiI CACGTC 1 cut(s) 378
AjnI CCWGG 1 cut(s) 654
AluBI AGCT 7 cut(s) 248, 446, 581, 592, 626, 704, 870
AluI AGCT 7 cut(s) 248, 446, 581, 592, 626, 704, 870
Alw26I GTCTC 1 cut(s) 368
AlwI GGATC 2 cut(s) 709, 763
ApeKI GCWGC 3 cut(s) 18, 149, 626
ApoI RAATTY 1 cut(s) 292
AsuHPI GGTGA 2 cut(s) 329, 560
AsuII TTCGAA 1 cut(s) 539
AxyI CCTNAGG 1 cut(s) 504
BauI CACGAG 2 cut(s) 153, 843
BbrPI CACGTG 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 444
BbvI GCAGC 3 cut(s) 30, 136, 613
BceAI ACGGC 1 cut(s) 601
BciT130I CCWGG 1 cut(s) 656
BcoDI GTCTC 1 cut(s) 368
BcuI ACTAGT 2 cut(s) 230, 431
BfaI CTAG 5 cut(s) 23, 225, 231, 432, 705
BglII AGATCT 1 cut(s) 643
BisI GCNGC 3 cut(s) 19, 150, 627
BlsI GCNGC 3 cut(s) 20, 151, 628
BmcAI AGTACT 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 656
BmgBI CACGTC 1 cut(s) 378
BmiI GGNNCC 2 cut(s) 163, 348
BmrFI CCNGG 1 cut(s) 656
BmsI GCATC 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 444
BplI GAGNNNNNCTC 2 cut(s) 374, 406
BpmI CTGGAG 3 cut(s) 27, 144, 935
Bpu14I TTCGAA 1 cut(s) 539
BsaAI YACGTR 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 33, 795
BsaWI WCCGGW 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 10
Bse21I CCTNAGG 1 cut(s) 504
BseBI CCWGG 1 cut(s) 656
BseDI CCNNGG 2 cut(s) 33, 795
BseMII CTCAG 4 cut(s) 249, 279, 326, 518
BseNI ACTGG 1 cut(s) 10
BseXI GCAGC 3 cut(s) 30, 136, 613
BsgI GTGCAG 1 cut(s) 37
BsiSI CCGG 2 cut(s) 165, 330
BsmAI GTCTC 1 cut(s) 368
BsmBI CGTCTC 1 cut(s) 368
Bsp119I TTCGAA 1 cut(s) 539
Bsp143I GATC 4 cut(s) 643, 714, 755, 910
Bsp19I CCATGG 1 cut(s) 795
BspCNI CTCAG 4 cut(s) 250, 280, 325, 517
BspLI GGNNCC 2 cut(s) 163, 348
BspPI GGATC 2 cut(s) 709, 763
BspQI GCTCTTC 1 cut(s) 683
BspT104I TTCGAA 1 cut(s) 539
BsrI ACTGG 1 cut(s) 10
BssECI CCNNGG 2 cut(s) 33, 795
BssMI GATC 4 cut(s) 643, 714, 755, 910
BssSI CACGAG 2 cut(s) 153, 843
BssT1I CCWWGG 2 cut(s) 33, 795
Bst2BI CACGAG 2 cut(s) 153, 843
Bst2UI CCWGG 1 cut(s) 656
Bst4CI ACNGT 2 cut(s) 367, 551
Bst6I CTCTTC 1 cut(s) 683
BstBAI YACGTR 1 cut(s) 44
BstBI TTCGAA 1 cut(s) 539
BstC8I GCNNGC 1 cut(s) 590
BstDEI CTNAG 6 cut(s) 258, 288, 312, 442, 504, 951
BstDSI CCRYGG 1 cut(s) 795
BstKTI GATC 4 cut(s) 646, 717, 758, 913
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 4 cut(s) 643, 714, 755, 910
BstNI CCWGG 1 cut(s) 656
BstSCI CCNGG 1 cut(s) 654
BstV1I GCAGC 3 cut(s) 30, 136, 613
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 2 cut(s) 643, 755
BstYI RGATCY 2 cut(s) 643, 755
Bsu36I CCTNAGG 1 cut(s) 504
BtgI CCRYGG 1 cut(s) 795
BtrI CACGTC 1 cut(s) 378
Cac8I GCNNGC 1 cut(s) 590
Csp6I GTAC 1 cut(s) 222
CviAII CATG 4 cut(s) 397, 796, 826, 880
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 6 cut(s) 258, 288, 312, 442, 504, 951
DpnI GATC 4 cut(s) 645, 716, 757, 912
DpnII GATC 4 cut(s) 643, 714, 755, 910
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 683
EarI CTCTTC 1 cut(s) 683
Eco130I CCWWGG 2 cut(s) 33, 795
Eco32I GATATC 1 cut(s) 661
Eco72I CACGTG 1 cut(s) 44
Eco81I CCTNAGG 1 cut(s) 504
EcoRII CCWGG 1 cut(s) 654
EcoRV GATATC 1 cut(s) 661
EcoT14I CCWWGG 2 cut(s) 33, 795
ErhI CCWWGG 2 cut(s) 33, 795
Esp3I CGTCTC 1 cut(s) 368
FaeI CATG 4 cut(s) 400, 799, 829, 883
FatI CATG 4 cut(s) 396, 795, 825, 879
FauNDI CATATG 1 cut(s) 573
Fnu4HI GCNGC 3 cut(s) 19, 150, 627
Fsp4HI GCNGC 3 cut(s) 19, 150, 627
FspBI CTAG 5 cut(s) 23, 225, 231, 432, 705
GluI GCNGC 3 cut(s) 19, 150, 627
GsuI CTGGAG 3 cut(s) 27, 144, 935
HapII CCGG 2 cut(s) 165, 330
Hin1II CATG 4 cut(s) 400, 799, 829, 883
HincII GTYRAC 2 cut(s) 202, 547
HindII GTYRAC 2 cut(s) 202, 547
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 5 cut(s) 131, 284, 308, 389, 451
HpaII CCGG 2 cut(s) 165, 330
HphI GGTGA 2 cut(s) 329, 560
Hpy166II GTNNAC 2 cut(s) 202, 547
Hpy188I TCNGA 4 cut(s) 259, 289, 643, 760
Hpy188III TCNNGA 4 cut(s) 123, 155, 845, 914
Hpy8I GTNNAC 2 cut(s) 202, 547
Hpy99I CGWCG 1 cut(s) 928
HpyAV CCTTC 4 cut(s) 80, 152, 360, 824
HpyCH4III ACNGT 2 cut(s) 367, 551
HpyCH4IV ACGT 2 cut(s) 43, 377
HpyCH4V TGCA 3 cut(s) 18, 629, 903
HpyF3I CTNAG 6 cut(s) 258, 288, 312, 442, 504, 951
HpySE526I ACGT 2 cut(s) 43, 377
Hsp92II CATG 4 cut(s) 400, 799, 829, 883
Kzo9I GATC 4 cut(s) 643, 714, 755, 910
LguI GCTCTTC 1 cut(s) 683
LmnI GCTCC 1 cut(s) 167
Lsp1109I GCAGC 3 cut(s) 30, 136, 613
LweI GCATC 1 cut(s) 412
MaeI CTAG 5 cut(s) 23, 225, 231, 432, 705
MaeII ACGT 2 cut(s) 43, 377
MaeIII GTNAC 2 cut(s) 427, 821
MalI GATC 4 cut(s) 645, 716, 757, 912
MboI GATC 4 cut(s) 643, 714, 755, 910
MboII GAAGA 6 cut(s) 243, 246, 449, 638, 697, 700
MflI RGATCY 2 cut(s) 643, 755
MluCI AATT 3 cut(s) 292, 558, 898
MlyI GAGTC 2 cut(s) 383, 445
MmeI TCCRAC 1 cut(s) 792
MnlI CCTC 7 cut(s) 77, 177, 253, 475, 513, 725, 869
MseI TTAA 5 cut(s) 117, 171, 522, 564, 594
MspA1I CMGCKG 1 cut(s) 626
MspI CCGG 2 cut(s) 165, 330
MspR9I CCNGG 1 cut(s) 656
MvaI CCWGG 1 cut(s) 656
NcoI CCATGG 1 cut(s) 795
NdeI CATATG 1 cut(s) 573
NdeII GATC 4 cut(s) 643, 714, 755, 910
NlaIII CATG 4 cut(s) 400, 799, 829, 883
NlaIV GGNNCC 2 cut(s) 163, 348
NspV TTCGAA 1 cut(s) 539
PciSI GCTCTTC 1 cut(s) 683
PfeI GAWTC 3 cut(s) 131, 284, 308
PflFI GACNNNGTC 1 cut(s) 209
PkrI GCNGC 3 cut(s) 20, 151, 628
PleI GAGTC 2 cut(s) 383, 445
PmaCI CACGTG 1 cut(s) 44
PmlI CACGTG 1 cut(s) 44
PpsI GAGTC 2 cut(s) 383, 445
Ppu21I YACGTR 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 654
PspCI CACGTG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 654
PspN4I GGNNCC 2 cut(s) 163, 348
PsuI RGATCY 2 cut(s) 643, 755
PsyI GACNNNGTC 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 683
SaqAI TTAA 5 cut(s) 117, 171, 522, 564, 594
SatI GCNGC 3 cut(s) 19, 150, 627
Sau3AI GATC 4 cut(s) 643, 714, 755, 910
ScaI AGTACT 1 cut(s) 223
SchI GAGTC 2 cut(s) 383, 445
ScrFI CCNGG 1 cut(s) 656
SfaNI GCATC 1 cut(s) 412
SfuI TTCGAA 1 cut(s) 539
SpeI ACTAGT 2 cut(s) 230, 431
Sse9I AATT 3 cut(s) 292, 558, 898
SspMI CTAG 5 cut(s) 23, 225, 231, 432, 705
StyD4I CCNGG 1 cut(s) 654
StyI CCWWGG 2 cut(s) 33, 795
TaaI ACNGT 2 cut(s) 367, 551
TaiI ACGT 2 cut(s) 46, 380
TaqI TCGA 3 cut(s) 392, 539, 670
TasI AATT 3 cut(s) 292, 558, 898
TatI WGTACW 1 cut(s) 221
TfiI GAWTC 3 cut(s) 131, 284, 308
Tru1I TTAA 5 cut(s) 117, 171, 522, 564, 594
Tru9I TTAA 5 cut(s) 117, 171, 522, 564, 594
TseI GCWGC 3 cut(s) 18, 149, 626
TspDTI ATGAA 6 cut(s) 258, 413, 489, 542, 600, 896
TspGWI ACGGA 1 cut(s) 758
Tth111I GACNNNGTC 1 cut(s) 209
XapI RAATTY 1 cut(s) 292
XspI CTAG 5 cut(s) 23, 225, 231, 432, 705
ZrmI AGTACT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.