Prupe.6G182000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011893
Physical Location & Seq
Forward (+)
18873107 .. 18875831
2725 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G182000.2

Sequence Viewer

Length: 1137 bp
ATGAGTAGTGATAATTCCAAAGATGGGTTTTGCAAAACCCGCCCGGTTCTCGGTGATTTGACCAACCGGCCCATAAAAAGGGGGTTTTCGATGATTTCAGCTGATTCGAAACCTAAATCTGGAGATGGGTATGGTAATAATGTGGATTCTGAAAATGGGGATTCCAAATTTGCCAAGCAAGTGTCTTTAGGGTGTGAGAATATAGTAAGAGAGAAGTGTAAGACCAAAATTGGAGCAGAATGTAACCCTGAAGCTTTATCTTCCCCAAAGGGCACACAAGATTCTGAGTTTTCACCTACTTATACTGCCACTGATGATTCATCGAATGACAACAGTGACTCTGTTACCTTGACTATGTCAAATGACATTGCGGAAAAGTCCAGTGACACTGGAGATAATGCGAGCAGTGTTATGGGGGTTGCTGATGCGTTGATGGATAATTGCACGTCCATTGTTTCAAATTCCAAGTGCTCAGGACTGTGCAAGAATGACTGTTGTGATGGTGGAGAAAAATGTCAGTATGGGAAAGCGGAACAGACTTCTGATGTTGCTCAAAGCATTCCTCTATATGAAGGATTAGTCACTGTTGTTCGCGGGAATGATGAAAAGGATCTTGATGATGGTAATCTGGCATCAAACAAACATGGTTATGCCAATAGTTCGAGATTGCCTGGGTCACATTGTTGCTCAAAATCCCATGAATTTGAAAAATTGGAAAGATGCACGACTCTTAAGGGTGATAATGTTGCTGGTTTGAACGTCGGTGATGACTTTCTTAAAGGTTGCTCTTGTTCGTTTTGCTTGAAAGCCGCTCACATTTTGTCAGACCTTCAATACCAGGATATCAAGGGTCGAATTTCTGCATTGAAGAAGAGTCAAAAGGAAGCGAACATATTTGTTGAGAAAAGTTTCAGGGGAAAGGAGATTAATACTGAGGGCTGGCCTCACCCAAACAAAACGTCAAAACTTGAATATGATCTCTCGAGTCAGTGGAGATCACTCTTTCTTCACGTGGAGGATATGCTTGTTCATGAAAGCAACCATCTCCAAGACAGTTATGTCACGCTAAAAGATCTGAGAGACAACTGCAAGACGGAACTGGAAATGACGAGTGGCATGCCTTCAGAGAAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

379

Amino Acids

41.13

Weight (kDa)

5.18

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10110 AT5G65120 AT5G65120
fragaria_vesca FvH4_1g21240
malus_domestica MD01G1027000.v1.1 MD15G1327000.v1.1
prunus_persica Prupe.6G182000_v2.0.a1 Prupe.6G182000_v2.0.a1
pyrus_communis pycom01g05490 pycom395g00050
rosa_chinensis RchiOBHm_Chr2g0115081
rosa_laevigata RLG00000018155
rosa_multiflora Rmu_sc0002784.1_g000001
rosa_roxburghii Rroxscaffold_2G00130550
rosa_rugosa Rorug02G0193200
rosa_samantha Rh2AG251700 Rh2BG261200 Rh2DG259800
rosa_wichuraiana Rw2G019630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1058
AccBSI CCGCTC 1 cut(s) 812
AccII CGCG 1 cut(s) 594
AciI CCGC 5 cut(s) 40, 371, 530, 594, 810
AclWI GGATC 1 cut(s) 618
AcsI RAATTY 4 cut(s) 167, 460, 701, 855
AcuI CTGAAG 2 cut(s) 270, 1107
AcvI CACGTG 1 cut(s) 1012
AfiI CCNNNNNNNGG 4 cut(s) 24, 50, 78, 119
AflII CTTAAG 1 cut(s) 731
AgsI TTSAA 7 cut(s) 459, 707, 757, 805, 833, 868, 971
AjiI CACGTC 1 cut(s) 447
AjnI CCWGG 2 cut(s) 670, 837
AluBI AGCT 2 cut(s) 101, 254
AluI AGCT 2 cut(s) 101, 254
Alw21I GWGCWC 1 cut(s) 473
Alw26I GTCTC 1 cut(s) 1074
AlwI GGATC 1 cut(s) 618
Ama87I CYCGRG 1 cut(s) 982
AoxI GGCC 2 cut(s) 68, 941
ApoI RAATTY 4 cut(s) 167, 460, 701, 855
ArsI GACNNNNNNTTYG 2 cut(s) 944, 976
AseI ATTAAT 1 cut(s) 927
Asp700I GAANNNNTTC 1 cut(s) 908
AspS9I GGNCC 1 cut(s) 69
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 5 cut(s) 65, 285, 749, 776, 938
AsuII TTCGAA 1 cut(s) 107
AvaI CYCGRG 1 cut(s) 982
BaeGI GKGCMC 1 cut(s) 275
BbrPI CACGTG 1 cut(s) 1012
Bbv12I GWGCWC 1 cut(s) 473
BccI CCATC 6 cut(s) 17, 119, 427, 494, 614, 1050
BcgI CGANNNNNNTGC 2 cut(s) 1099, 1133
BciT130I CCWGG 2 cut(s) 672, 839
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 1074
BfrI CTTAAG 1 cut(s) 731
BglII AGATCT 1 cut(s) 1072
BisI GCNGC 1 cut(s) 810
BlsI GCNGC 1 cut(s) 811
Bme1390I CCNGG 3 cut(s) 44, 672, 839
BmeT110I CYCGRG 1 cut(s) 982
BmgBI CACGTC 1 cut(s) 447
BmgT120I GGNCC 1 cut(s) 69
BmrFI CCNGG 3 cut(s) 44, 672, 839
BmsI GCATC 3 cut(s) 415, 641, 710
BpmI CTGGAG 2 cut(s) 141, 411
Bpu10I CCTNAGC 1 cut(s) 472
Bpu14I TTCGAA 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 44
BsaAI YACGTR 1 cut(s) 1012
BsaBI GATNNNNATC 1 cut(s) 624
BsaJI CCNNGG 1 cut(s) 671
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 50, 78, 119
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 3 cut(s) 381, 394, 1104
Bse3DI GCAATG 1 cut(s) 366
Bse8I GATNNNNATC 1 cut(s) 624
BseBI CCWGG 2 cut(s) 672, 839
BseDI CCNNGG 1 cut(s) 671
BseJI GATNNNNATC 1 cut(s) 624
BseLI CCNNNNNNNGG 4 cut(s) 24, 50, 78, 119
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 4 cut(s) 276, 486, 924, 1067
BseNI ACTGG 3 cut(s) 381, 394, 1104
BseSI GKGCMC 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 594
BshFI GGCC 2 cut(s) 70, 943
BsiHKAI GWGCWC 1 cut(s) 473
BsiHKCI CYCGRG 1 cut(s) 982
BsiSI CCGG 2 cut(s) 44, 67
BslI CCNNNNNNNGG 4 cut(s) 24, 50, 78, 119
BsmAI GTCTC 1 cut(s) 1074
BsmI GAATGC 1 cut(s) 558
BsnI GGCC 2 cut(s) 70, 943
BsoBI CYCGRG 1 cut(s) 982
Bsp119I TTCGAA 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 275, 473
Bsp143I GATC 4 cut(s) 610, 976, 995, 1072
BspACI CCGC 5 cut(s) 40, 371, 530, 594, 810
BspANI GGCC 2 cut(s) 70, 943
BspCNI CTCAG 4 cut(s) 277, 485, 925, 1068
BspFNI CGCG 1 cut(s) 594
BspHI TCATGA 1 cut(s) 1030
BspPI GGATC 1 cut(s) 618
BspT104I TTCGAA 1 cut(s) 107
BspTI CTTAAG 1 cut(s) 731
BsrBI CCGCTC 1 cut(s) 812
BsrDI GCAATG 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 66
BsrI ACTGG 3 cut(s) 381, 394, 1104
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 671
BssMI GATC 4 cut(s) 610, 976, 995, 1072
Bst2UI CCWGG 2 cut(s) 672, 839
Bst4CI ACNGT 5 cut(s) 335, 480, 494, 586, 1055
Bst6I CTCTTC 1 cut(s) 866
BstAFI CTTAAG 1 cut(s) 731
BstBAI YACGTR 1 cut(s) 1012
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 3 cut(s) 403, 941, 1118
BstDEI CTNAG 4 cut(s) 285, 472, 933, 1076
BstFNI CGCG 1 cut(s) 594
BstKTI GATC 4 cut(s) 613, 979, 998, 1075
BstMAI GTCTC 1 cut(s) 1074
BstMBI GATC 4 cut(s) 610, 976, 995, 1072
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstNI CCWGG 2 cut(s) 672, 839
BstNSI RCATGY 1 cut(s) 1120
BstSCI CCNGG 3 cut(s) 42, 670, 837
BstSLI GKGCMC 1 cut(s) 275
BstUI CGCG 1 cut(s) 594
BstX2I RGATCY 2 cut(s) 610, 1072
BstYI RGATCY 2 cut(s) 610, 1072
BsuRI GGCC 2 cut(s) 70, 943
BtrI CACGTC 1 cut(s) 447
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 7 cut(s) 309, 340, 387, 388, 412, 582, 995
Cac8I GCNNGC 3 cut(s) 403, 941, 1118
CciI TCATGA 1 cut(s) 1030
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 69
CviAII CATG 4 cut(s) 644, 698, 1031, 1117
CviJI RGCY 6 cut(s) 70, 101, 254, 809, 939, 943
CviKI_1 RGCY 6 cut(s) 70, 101, 254, 809, 939, 943
DdeI CTNAG 4 cut(s) 285, 472, 933, 1076
DpnI GATC 4 cut(s) 612, 978, 997, 1074
DpnII GATC 4 cut(s) 610, 976, 995, 1072
DrdI GACNNNNNNGTC 1 cut(s) 1058
DseDI GACNNNNNNGTC 1 cut(s) 1058
Eam1104I CTCTTC 1 cut(s) 866
EarI CTCTTC 1 cut(s) 866
Eco32I GATATC 1 cut(s) 844
Eco57I CTGAAG 2 cut(s) 270, 1107
Eco72I CACGTG 1 cut(s) 1012
Eco88I CYCGRG 1 cut(s) 982
EcoRII CCWGG 2 cut(s) 670, 837
EcoRV GATATC 1 cut(s) 844
FaeI CATG 4 cut(s) 647, 701, 1034, 1120
FatI CATG 4 cut(s) 643, 697, 1030, 1116
FauI CCCGC 2 cut(s) 47, 587
Fnu4HI GCNGC 1 cut(s) 810
Fsp4HI GCNGC 1 cut(s) 810
GluI GCNGC 1 cut(s) 810
GsuI CTGGAG 2 cut(s) 141, 411
HaeIII GGCC 2 cut(s) 70, 943
HapII CCGG 2 cut(s) 44, 67
Hin1II CATG 4 cut(s) 647, 701, 1034, 1120
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 9 cut(s) 104, 146, 161, 281, 317, 338, 727, 874, 985
HpaII CCGG 2 cut(s) 44, 67
HphI GGTGA 5 cut(s) 65, 285, 749, 776, 938
Hpy188I TCNGA 6 cut(s) 151, 286, 544, 826, 1077, 1126
Hpy188III TCNNGA 6 cut(s) 120, 474, 614, 663, 982, 1031
Hpy99I CGWCG 1 cut(s) 764
HpyAV CCTTC 3 cut(s) 566, 839, 1131
HpyCH4III ACNGT 5 cut(s) 335, 480, 494, 586, 1055
HpyCH4IV ACGT 4 cut(s) 446, 759, 959, 1011
HpyCH4V TGCA 6 cut(s) 33, 444, 483, 723, 863, 1089
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 4 cut(s) 285, 472, 933, 1076
HpySE526I ACGT 4 cut(s) 446, 759, 959, 1011
Hsp92II CATG 4 cut(s) 647, 701, 1034, 1120
Kzo9I GATC 4 cut(s) 610, 976, 995, 1072
LmnI GCTCC 1 cut(s) 233
LweI GCATC 3 cut(s) 415, 641, 710
MaeII ACGT 4 cut(s) 446, 759, 959, 1011
MaeIII GTNAC 7 cut(s) 242, 335, 343, 383, 580, 675, 1060
MalI GATC 4 cut(s) 612, 978, 997, 1074
MbiI CCGCTC 1 cut(s) 812
MboI GATC 4 cut(s) 610, 976, 995, 1072
MboII GAAGA 4 cut(s) 252, 880, 883, 998
MflI RGATCY 2 cut(s) 610, 1072
MhlI GDGCHC 2 cut(s) 275, 473
MluCI AATT 8 cut(s) 13, 167, 228, 439, 460, 701, 710, 855
MlyI GAGTC 4 cut(s) 332, 721, 883, 994
MnlI CCTC 4 cut(s) 573, 928, 954, 1009
MroXI GAANNNNTTC 1 cut(s) 908
MseI TTAA 3 cut(s) 732, 777, 927
MslI CAYNNNNRTG 1 cut(s) 648
MspA1I CMGCKG 1 cut(s) 101
MspCI CTTAAG 1 cut(s) 731
MspI CCGG 2 cut(s) 44, 67
MspR9I CCNGG 3 cut(s) 44, 672, 839
Mva1269I GAATGC 1 cut(s) 558
MvaI CCWGG 2 cut(s) 672, 839
MvnI CGCG 1 cut(s) 594
MwoI GCNNNNNNNGC 1 cut(s) 39
NciI CCSGG 1 cut(s) 44
NdeII GATC 4 cut(s) 610, 976, 995, 1072
NlaIII CATG 4 cut(s) 647, 701, 1034, 1120
NmuCI GTSAC 5 cut(s) 335, 383, 580, 675, 1060
NspI RCATGY 1 cut(s) 1120
NspV TTCGAA 1 cut(s) 107
PaeI GCATGC 1 cut(s) 1120
PaeR7I CTCGAG 1 cut(s) 982
PagI TCATGA 1 cut(s) 1030
PctI GAATGC 1 cut(s) 558
PdmI GAANNNNTTC 1 cut(s) 908
PfeI GAWTC 5 cut(s) 104, 146, 161, 281, 317
PflFI GACNNNGTC 1 cut(s) 355
PkrI GCNGC 1 cut(s) 811
PleI GAGTC 4 cut(s) 332, 721, 882, 993
PmaCI CACGTG 1 cut(s) 1012
PmlI CACGTG 1 cut(s) 1012
PpsI GAGTC 4 cut(s) 332, 721, 882, 993
Ppu21I YACGTR 1 cut(s) 1012
PshBI ATTAAT 1 cut(s) 927
Psp6I CCWGG 2 cut(s) 670, 837
PspCI CACGTG 1 cut(s) 1012
PspGI CCWGG 2 cut(s) 670, 837
PspPI GGNCC 1 cut(s) 69
PsuI RGATCY 2 cut(s) 610, 1072
PsyI GACNNNGTC 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 648
SaqAI TTAA 3 cut(s) 732, 777, 927
SatI GCNGC 1 cut(s) 810
Sau3AI GATC 4 cut(s) 610, 976, 995, 1072
Sau96I GGNCC 1 cut(s) 69
SchI GAGTC 4 cut(s) 332, 721, 883, 994
ScrFI CCNGG 3 cut(s) 44, 672, 839
SduI GDGCHC 2 cut(s) 275, 473
SfaNI GCATC 3 cut(s) 415, 641, 710
Sfr274I CTCGAG 1 cut(s) 982
SfuI TTCGAA 1 cut(s) 107
SlaI CTCGAG 1 cut(s) 982
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 2 cut(s) 731, 982
SmoI CTYRAG 2 cut(s) 731, 982
SphI GCATGC 1 cut(s) 1120
Sse9I AATT 8 cut(s) 13, 167, 228, 439, 460, 701, 710, 855
SsiI CCGC 5 cut(s) 40, 371, 530, 594, 810
StyD4I CCNGG 3 cut(s) 42, 670, 837
TaaI ACNGT 5 cut(s) 335, 480, 494, 586, 1055
TaiI ACGT 4 cut(s) 449, 762, 962, 1014
TaqI TCGA 6 cut(s) 89, 107, 323, 662, 853, 983
TasI AATT 8 cut(s) 13, 167, 228, 439, 460, 701, 710, 855
TauI GCSGC 1 cut(s) 812
TfiI GAWTC 5 cut(s) 104, 146, 161, 281, 317
Tru1I TTAA 3 cut(s) 732, 777, 927
Tru9I TTAA 3 cut(s) 732, 777, 927
TscAI CASTG 7 cut(s) 316, 340, 388, 394, 412, 589, 995
TseFI GTSAC 5 cut(s) 335, 383, 580, 675, 1060
Tsp45I GTSAC 5 cut(s) 335, 383, 580, 675, 1060
TspDTI ATGAA 6 cut(s) 309, 585, 618, 714, 1019, 1047
TspGWI ACGGA 1 cut(s) 1109
TspRI CASTG 7 cut(s) 316, 340, 388, 394, 412, 589, 995
Tth111I GACNNNGTC 1 cut(s) 355
Vha464I CTTAAG 1 cut(s) 731
VspI ATTAAT 1 cut(s) 927
XapI RAATTY 4 cut(s) 167, 460, 701, 855
XceI RCATGY 1 cut(s) 1120
XhoI CTCGAG 1 cut(s) 982
XmnI GAANNNNTTC 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.