FvH4_1g21240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011893
Physical Location & Seq
Reverse (-)
13251613 .. 13253930
2318 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21240.t1

Sequence Viewer

Length: 1071 bp
ATGAGTAACGATAATTCAGCAGATGGGTCTTGCAAAACCCGTTCGGCTCTTGGTGATTTGACCAATCGGCCTCTTAAAAGGGGGTTTTTGAAGATTTCAGCTGATTTGGATGCGAAATCTGGAGATGGGAATGGGGGAAATGTGGGTTCTAGAGATGGGGGTTTGTGGAAGTTCGCAAAGAAAGTGTCTTTGGGGGATGAGAATTTTGTTGGAGAGAAGTTGGGGGACGATTGTGACCCTAAAGGTGTGTCTTCATCGAAGGGGATAGTGCCGGATCCTGTGATTTCACCCACTTGCAGTGCGGGGGATTCGACGAATGACAACAATGCATCTGTTATTGTGCTTGATGATGACATTGGAGAGAAGTCCAGTGACAGTGTTATGGAAGTTGGTGATGCGTCGAGAGATAATTGCTTGTCGGTTGCTTCAATGTCCACATGCTCAGAGCTGTGCAAGAATGGCTGCTGCGATGGCGGTGGGAAATGTCAGTATGAGAAAGCGGGACAGACCTCTGACGATGCTCAGAGCACTCCTATGTTAGGCAATGTTGTTCCCAGGAATGATGAAAGGGACCCTGGTCTTGGTAAAGTAGGTGCAACTGCATATGGCTCTACCGAGTGGTCTAAGATGCCTACCTCACTGGGATGTTCAATGGCAAGATGCACAAGTCTTAGTGGTGTGGCTGATTTGAATGTAGGGGATGACTCTCTCAATGATTGCTCGTGTTCATTTTGCTTGCAAGCTGCTCACATTCTGTCGGACCTCCAATACCAGGATATAAAGGGTCGTATTACTGCTTTGAAGAAGAGTCAAAAAGAAGCAGGCATATTGGTTCAGAAAAGTTTCAGGGAAAAGGAGATTGATCCTAAGGGACCACGGTACCCAAACAAAACATCTAAACTGGAATCTGATCTCTCAAGTCAGTGGAGATCCCTCTTTCTTCACATGGAAGATATCTTCGTAAATGAAGGCAACCACCTTCACGACAAGTTTGTCACGCTAAAAGATTTGAGAGACAACTGCAAGATGGAACTGGAAACGGCTATCGGAGTGCCCTCAGAGAGACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

37.95

Weight (kDa)

4.94

Isoelectric Point (pI)

33.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10110 AT5G65120 AT5G65120
fragaria_vesca FvH4_1g21240
malus_domestica MD01G1027000.v1.1 MD15G1327000.v1.1
prunus_persica Prupe.6G182000_v2.0.a1 Prupe.6G182000_v2.0.a1
pyrus_communis pycom01g05490 pycom395g00050
rosa_chinensis RchiOBHm_Chr2g0115081
rosa_laevigata RLG00000018155
rosa_multiflora Rmu_sc0002784.1_g000001
rosa_roxburghii Rroxscaffold_2G00130550
rosa_rugosa Rorug02G0193200
rosa_samantha Rh2AG251700 Rh2BG261200 Rh2DG259800
rosa_wichuraiana Rw2G019630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 992
Acc65I GGTACC 1 cut(s) 879
AccB1I GGYRCC 1 cut(s) 879
AciI CCGC 3 cut(s) 302, 474, 500
AclWI GGATC 4 cut(s) 269, 282, 857, 924
AcsI RAATTY 1 cut(s) 202
AfaI GTAC 1 cut(s) 881
AfiI CCNNNNNNNGG 3 cut(s) 539, 581, 772
AgsI TTSAA 5 cut(s) 91, 429, 651, 691, 802
AjnI CCWGG 3 cut(s) 554, 574, 771
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 3 cut(s) 101, 448, 743
AluI AGCT 3 cut(s) 101, 448, 743
Alw21I GWGCWC 1 cut(s) 530
Alw26I GTCTC 2 cut(s) 1008, 1057
AlwI GGATC 4 cut(s) 269, 282, 857, 924
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 3 cut(s) 462, 465, 743
ApoI RAATTY 1 cut(s) 202
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
Asp700I GAANNNNTTC 1 cut(s) 842
Asp718I GGTACC 1 cut(s) 879
AspS9I GGNCC 3 cut(s) 571, 760, 872
AsuHPI GGTGA 3 cut(s) 65, 279, 404
AvaII GGWCC 3 cut(s) 571, 760, 872
AxyI CCTNAGG 1 cut(s) 867
BaeGI GKGCMC 1 cut(s) 1056
BaeI ACNNNNGTAYC 2 cut(s) 863, 896
BamHI GGATCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 879
BauI CACGAG 1 cut(s) 721
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 530
BbvI GCAGC 3 cut(s) 449, 452, 730
BccI CCATC 5 cut(s) 17, 119, 149, 464, 1021
BceAI ACGGC 1 cut(s) 1056
BciT130I CCWGG 3 cut(s) 556, 576, 773
BcoDI GTCTC 2 cut(s) 1008, 1057
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 1067
BisI GCNGC 3 cut(s) 463, 466, 744
BlsI GCNGC 3 cut(s) 464, 467, 745
Bme1390I CCNGG 3 cut(s) 556, 576, 773
Bme18I GGWCC 3 cut(s) 571, 760, 872
BmgT120I GGNCC 3 cut(s) 571, 760, 872
BmiI GGNNCC 5 cut(s) 276, 572, 573, 873, 881
BmrFI CCNGG 3 cut(s) 556, 576, 773
BmrI ACTGGG 1 cut(s) 650
BmsI GCATC 6 cut(s) 100, 338, 385, 508, 618, 650
BmuI ACTGGG 1 cut(s) 650
BoxI GACNNNNGTC 1 cut(s) 576
BpiI GAAGAC 1 cut(s) 243
BpmI CTGGAG 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 901
BsaJI CCNNGG 3 cut(s) 554, 574, 875
Bsc4I CCNNNNNNNGG 3 cut(s) 539, 581, 772
Bse1I ACTGG 4 cut(s) 369, 645, 906, 1038
Bse21I CCTNAGG 1 cut(s) 867
Bse3DI GCAATG 1 cut(s) 550
BseBI CCWGG 3 cut(s) 556, 576, 773
BseDI CCNNGG 3 cut(s) 554, 574, 875
BseGI GGATG 4 cut(s) 115, 202, 650, 706
BseLI CCNNNNNNNGG 3 cut(s) 539, 581, 772
BseMI GCAATG 1 cut(s) 550
BseMII CTCAG 3 cut(s) 456, 536, 1071
BseNI ACTGG 4 cut(s) 369, 645, 906, 1038
BseSI GKGCMC 1 cut(s) 1056
BseXI GCAGC 3 cut(s) 449, 452, 730
BshFI GGCC 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 879
BsiHKAI GWGCWC 1 cut(s) 530
BsiSI CCGG 1 cut(s) 272
BslFI GGGAC 4 cut(s) 239, 516, 584, 885
BslI CCNNNNNNNGG 3 cut(s) 539, 581, 772
BsmAI GTCTC 2 cut(s) 1008, 1057
BsmFI GGGAC 4 cut(s) 239, 516, 584, 885
BsnI GGCC 1 cut(s) 70
Bsp1286I GDGCHC 2 cut(s) 530, 1056
Bsp143I GATC 4 cut(s) 274, 862, 910, 929
BspACI CCGC 3 cut(s) 302, 474, 500
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 3 cut(s) 455, 535, 1070
BspLI GGNNCC 5 cut(s) 276, 572, 573, 873, 881
BspPI GGATC 4 cut(s) 269, 282, 857, 924
BspT107I GGYRCC 1 cut(s) 879
BsrDI GCAATG 1 cut(s) 550
BsrI ACTGG 4 cut(s) 369, 645, 906, 1038
BssECI CCNNGG 3 cut(s) 554, 574, 875
BssMI GATC 4 cut(s) 274, 862, 910, 929
BssSI CACGAG 1 cut(s) 721
Bst2BI CACGAG 1 cut(s) 721
Bst2UI CCWGG 3 cut(s) 556, 576, 773
Bst4CI ACNGT 3 cut(s) 377, 879, 1068
Bst6I CTCTTC 1 cut(s) 800
BstC8I GCNNGC 3 cut(s) 737, 741, 823
BstDEI CTNAG 6 cut(s) 442, 522, 624, 671, 867, 1057
BstDSI CCRYGG 1 cut(s) 875
BstENI CCTNNNNNAGG 1 cut(s) 537
BstF5I GGATG 4 cut(s) 115, 202, 650, 706
BstKTI GATC 4 cut(s) 277, 865, 913, 932
BstMAI GTCTC 2 cut(s) 1008, 1057
BstMBI GATC 4 cut(s) 274, 862, 910, 929
BstMWI GCNNNNNNNGC 2 cut(s) 459, 471
BstNI CCWGG 3 cut(s) 556, 576, 773
BstNSI RCATGY 1 cut(s) 441
BstPAI GACNNNNGTC 1 cut(s) 576
BstSCI CCNGG 3 cut(s) 554, 574, 771
BstSFI CTRYAG 1 cut(s) 1067
BstSLI GKGCMC 1 cut(s) 1056
BstV1I GCAGC 3 cut(s) 449, 452, 730
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 2 cut(s) 274, 929
BstYI RGATCY 2 cut(s) 274, 929
Bsu36I CCTNAGG 1 cut(s) 867
BsuRI GGCC 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 875
BtgZI GCGATG 1 cut(s) 483
BtsCI GGATG 4 cut(s) 115, 202, 650, 706
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 5 cut(s) 304, 376, 382, 638, 929
Cac8I GCNNGC 3 cut(s) 737, 741, 823
Cfr13I GGNCC 3 cut(s) 571, 760, 872
CseI GACGC 1 cut(s) 387
Csp6I GTAC 1 cut(s) 880
CviAII CATG 2 cut(s) 438, 946
CviJI RGCY 9 cut(s) 47, 70, 101, 448, 462, 609, 683, 743, 1043
CviKI_1 RGCY 9 cut(s) 47, 70, 101, 448, 462, 609, 683, 743, 1043
CviQI GTAC 1 cut(s) 880
DdeI CTNAG 6 cut(s) 442, 522, 624, 671, 867, 1057
DpnI GATC 4 cut(s) 276, 864, 912, 931
DpnII GATC 4 cut(s) 274, 862, 910, 929
DrdI GACNNNNNNGTC 1 cut(s) 992
DseDI GACNNNNNNGTC 1 cut(s) 992
Eam1104I CTCTTC 1 cut(s) 800
EarI CTCTTC 1 cut(s) 800
Eco32I GATATC 1 cut(s) 955
Eco47I GGWCC 3 cut(s) 571, 760, 872
Eco81I CCTNAGG 1 cut(s) 867
EcoNI CCTNNNNNAGG 1 cut(s) 537
EcoO109I RGGNCCY 1 cut(s) 571
EcoRII CCWGG 3 cut(s) 554, 574, 771
EcoRV GATATC 1 cut(s) 955
EcoT22I ATGCAT 1 cut(s) 331
FaeI CATG 2 cut(s) 441, 949
FaiI YATR 9 cut(s) 383, 439, 492, 536, 604, 606, 779, 827, 947
FaqI GGGAC 4 cut(s) 239, 516, 584, 885
FatI CATG 2 cut(s) 437, 945
FauI CCCGC 2 cut(s) 295, 493
FauNDI CATATG 1 cut(s) 604
Fnu4HI GCNGC 3 cut(s) 463, 466, 744
FokI GGATG 4 cut(s) 122, 209, 657, 713
Fsp4HI GCNGC 3 cut(s) 463, 466, 744
FspBI CTAG 1 cut(s) 150
GluI GCNGC 3 cut(s) 463, 466, 744
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 1 cut(s) 70
HapII CCGG 1 cut(s) 272
HgaI GACGC 1 cut(s) 387
Hin1II CATG 2 cut(s) 441, 949
HinfI GANTC 4 cut(s) 308, 704, 808, 905
HpaII CCGG 1 cut(s) 272
HphI GGTGA 3 cut(s) 65, 279, 404
Hpy166II GTNNAC 1 cut(s) 435
Hpy188I TCNGA 8 cut(s) 445, 514, 525, 760, 837, 910, 1049, 1060
Hpy188III TCNNGA 4 cut(s) 120, 150, 402, 983
Hpy8I GTNNAC 1 cut(s) 435
Hpy99I CGWCG 2 cut(s) 316, 403
HpyAV CCTTC 3 cut(s) 253, 962, 989
HpyCH4III ACNGT 3 cut(s) 377, 879, 1068
HpyCH4V TGCA 9 cut(s) 33, 297, 329, 453, 596, 602, 663, 739, 1023
HpyF10VI GCNNNNNNNGC 2 cut(s) 459, 471
HpyF3I CTNAG 6 cut(s) 442, 522, 624, 671, 867, 1057
Hsp92II CATG 2 cut(s) 441, 949
KflI GGGWCCC 1 cut(s) 571
KpnI GGTACC 1 cut(s) 883
Kzo9I GATC 4 cut(s) 274, 862, 910, 929
Lsp1109I GCAGC 3 cut(s) 449, 452, 730
LweI GCATC 6 cut(s) 100, 338, 385, 508, 618, 650
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 4 cut(s) 5, 233, 371, 994
MalI GATC 4 cut(s) 276, 864, 912, 931
MboI GATC 4 cut(s) 274, 862, 910, 929
MboII GAAGA 7 cut(s) 103, 243, 814, 817, 932, 949, 962
MflI RGATCY 2 cut(s) 274, 929
MhlI GDGCHC 2 cut(s) 530, 1056
MluCI AATT 3 cut(s) 13, 202, 409
MlyI GAGTC 2 cut(s) 698, 817
MmeI TCCRAC 2 cut(s) 190, 738
MnlI CCTC 6 cut(s) 81, 520, 646, 773, 944, 1066
Mph1103I ATGCAT 1 cut(s) 331
MroXI GAANNNNTTC 1 cut(s) 842
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 2 cut(s) 533, 643
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 3 cut(s) 556, 576, 773
MvaI CCWGG 3 cut(s) 556, 576, 773
MwoI GCNNNNNNNGC 2 cut(s) 459, 471
NdeI CATATG 1 cut(s) 604
NdeII GATC 4 cut(s) 274, 862, 910, 929
NlaIII CATG 2 cut(s) 441, 949
NlaIV GGNNCC 5 cut(s) 276, 572, 573, 873, 881
NmuCI GTSAC 3 cut(s) 233, 371, 994
NsiI ATGCAT 1 cut(s) 331
NspI RCATGY 1 cut(s) 441
PdmI GAANNNNTTC 1 cut(s) 842
PfeI GAWTC 2 cut(s) 308, 905
PkrI GCNGC 3 cut(s) 464, 467, 745
PleI GAGTC 2 cut(s) 698, 816
PpsI GAGTC 2 cut(s) 698, 816
PpuMI RGGWCCY 1 cut(s) 571
PshAI GACNNNNGTC 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 571
Psp6I CCWGG 3 cut(s) 554, 574, 771
PspGI CCWGG 3 cut(s) 554, 574, 771
PspN4I GGNNCC 5 cut(s) 276, 572, 573, 873, 881
PspPI GGNCC 3 cut(s) 571, 760, 872
PspPPI RGGWCCY 1 cut(s) 571
PsuI RGATCY 2 cut(s) 274, 929
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 1 cut(s) 881
RsaNI GTAC 1 cut(s) 880
RseI CAYNNNNRTG 2 cut(s) 533, 643
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 3 cut(s) 463, 466, 744
Sau3AI GATC 4 cut(s) 274, 862, 910, 929
Sau96I GGNCC 3 cut(s) 571, 760, 872
SchI GAGTC 2 cut(s) 698, 817
ScrFI CCNGG 3 cut(s) 556, 576, 773
SduI GDGCHC 2 cut(s) 530, 1056
SetI ASST 9 cut(s) 103, 247, 450, 512, 595, 638, 745, 765, 981
SfaNI GCATC 6 cut(s) 100, 338, 385, 508, 618, 650
SfcI CTRYAG 1 cut(s) 1067
SinI GGWCC 3 cut(s) 571, 760, 872
SmiMI CAYNNNNRTG 2 cut(s) 533, 643
SmlI CTYRAG 1 cut(s) 916
SmoI CTYRAG 1 cut(s) 916
Sse9I AATT 3 cut(s) 13, 202, 409
SsiI CCGC 3 cut(s) 302, 474, 500
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 554, 574, 771
TaaI ACNGT 3 cut(s) 377, 879, 1068
TaqI TCGA 3 cut(s) 257, 311, 401
TasI AATT 3 cut(s) 13, 202, 409
TfiI GAWTC 2 cut(s) 308, 905
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 5 cut(s) 304, 376, 382, 645, 929
TseFI GTSAC 3 cut(s) 233, 371, 994
TseI GCWGC 3 cut(s) 462, 465, 743
Tsp45I GTSAC 3 cut(s) 233, 371, 994
TspDTI ATGAA 4 cut(s) 243, 579, 717, 981
TspRI CASTG 5 cut(s) 304, 376, 382, 645, 929
VpaK11BI GGWCC 3 cut(s) 571, 760, 872
XagI CCTNNNNNAGG 1 cut(s) 537
XapI RAATTY 1 cut(s) 202
XbaI TCTAGA 1 cut(s) 149
XceI RCATGY 1 cut(s) 441
XmnI GAANNNNTTC 1 cut(s) 842
XspI CTAG 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.