Rh2DG259800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0011893
Physical Location & Seq
Reverse (-)
27894195 .. 27897902
3708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG259800.1

Sequence Viewer

Length: 1233 bp
ATGAGCAACGATAATTCAGCAGATGGGTCTTGCAAAACCCGTTCGGCTCTTGGTGATTTGACCAATCGGCCCCTCAAAAGGGGGTTTTTGAAGATTTCTGCCGATTCTGAACCGAAATCTGGAGATGGGTATGGGGGAAATGTGGGTTGTAGAGATGGGGTTTCGCGTAAATTGGCAAAGCAAGTGTCTTTGGGGGATGAGAATATGGTTCGAGAGAAATTGGGGGAAGATTGTAACCCTAAAGGTTTCTCTTTGCCAAAGGGGATGCCAGATTCTGTGATTTCACCCACTTGCAGTGCAGGGGATTCGACGAATGACAACAATGCATCTGTTGTTGTGCTTGATGATGACATTGAAGAAAAGTCCAATGACAGTGTTATGGAAGTTGGTGATGCGTCCAGGGATAATTGCTTGTCGGTAGCTTCAATGTCCACATGCTCAGAGCTGTGCAAGAATGGCTGCTGTGATGGCGGTGGGAAATGTCAATATGAGAAACCGGGACAGACCTCTGATGATGCTCAGAGCACTCCTACATGTGAAGGATTAGGCAATGTTGTTCCCAGGAATGATGAAAGGGATCCTGGTGTTGGCAAAGTGGGTGCGACTAAATATGGCTCTACCGAGTGGTCTAAGATGCCTACCTCACTGGGTTCTTCAATGGCAAGATGCACAACTGTTAATAGTGCTGCTGATTTGAATGCAGGCGATGACTTGCTCAATGATTGCTCTTGTTCATTTTGCTTGCAAGCTGCTCACATTCTGTCAGACCTCCAATACCAGGATATAAAGGGTCGAATTTCTGCTTTAAAGAAGAGTCAAAAAGAAGCAGGCATATTGGTTCAGAAAAGTTTTAGGGGAAAGGAGATTGATCCTAAGGGACCACGGTACGCAAACAAAACATCAAAACTTGAATCTGATCTCTCAAGTCAGTGGAGATCACTCTTTCTTCACATGGAGGATATCTTCGTAAATGAAGGCAACCACCTTAAAAGTTCTGCACGCGCTGACGCGCATGAGGGGGCAACCACGTCCTCATTGCTCAACAGCGGAGTGGCAAAAGTTTATTCCTCCAACAGGGGAATCTGTGTGAGTAAACTCGCTCTTGTGTTCGATGCACTTAAAATTTGGATGGAGAAACCTGTACAAGAGGACGAGGGATATATAGAAGAGGATATTGATGCCGCAGCACACACATTCAAGTGTCTTATTCATGCTTGCATCGATCAACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

410

Amino Acids

43.8

Weight (kDa)

5.07

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10110 AT5G65120 AT5G65120
fragaria_vesca FvH4_1g21240
malus_domestica MD01G1027000.v1.1 MD15G1327000.v1.1
prunus_persica Prupe.6G182000_v2.0.a1 Prupe.6G182000_v2.0.a1
pyrus_communis pycom01g05490 pycom395g00050
rosa_chinensis RchiOBHm_Chr2g0115081
rosa_laevigata RLG00000018155
rosa_multiflora Rmu_sc0002784.1_g000001
rosa_roxburghii Rroxscaffold_2G00130550
rosa_rugosa Rorug02G0193200
rosa_samantha Rh2AG251700 Rh2BG261200 Rh2DG259800
rosa_wichuraiana Rw2G019630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 166, 1002, 1010
AciI CCGC 3 cut(s) 471, 1047, 1182
AclWI GGATC 3 cut(s) 572, 585, 863
AcsI RAATTY 2 cut(s) 795, 1122
AfaI GTAC 2 cut(s) 887, 1143
AfiI CCNNNNNNNGG 6 cut(s) 78, 79, 119, 587, 778, 1074
AflIII ACRYGT 1 cut(s) 533
AgsI TTSAA 7 cut(s) 91, 356, 426, 657, 697, 911, 1198
AjiI CACGTC 1 cut(s) 1029
AjnI CCWGG 4 cut(s) 398, 560, 580, 777
AluBI AGCT 3 cut(s) 422, 445, 749
AluI AGCT 3 cut(s) 422, 445, 749
Alw21I GWGCWC 1 cut(s) 527
AlwI GGATC 3 cut(s) 572, 585, 863
AlwNI CAGNNNCTG 1 cut(s) 275
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 4 cut(s) 459, 686, 749, 1184
ApoI RAATTY 2 cut(s) 795, 1122
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AspLEI GCGC 2 cut(s) 1004, 1012
AspS9I GGNCC 2 cut(s) 69, 878
AsuC2I CCSGG 1 cut(s) 498
AsuHPI GGTGA 3 cut(s) 65, 276, 401
AvaII GGWCC 1 cut(s) 878
AxyI CCTNAGG 1 cut(s) 873
BamHI GGATCC 1 cut(s) 577
Bbv12I GWGCWC 1 cut(s) 527
BbvI GCAGC 4 cut(s) 446, 673, 736, 1196
BccI CCATC 5 cut(s) 17, 119, 149, 461, 1123
BcgI CGANNNNNNTGC 2 cut(s) 288, 322
BciT130I CCWGG 4 cut(s) 400, 562, 582, 779
BcnI CCSGG 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 1229
BisI GCNGC 5 cut(s) 460, 687, 750, 1182, 1185
BlsI GCNGC 5 cut(s) 461, 688, 751, 1183, 1186
Bme1390I CCNGG 5 cut(s) 400, 498, 562, 582, 779
Bme18I GGWCC 1 cut(s) 878
BmgBI CACGTC 1 cut(s) 1029
BmgT120I GGNCC 2 cut(s) 69, 878
BmiI GGNNCC 3 cut(s) 71, 579, 879
BmrFI CCNGG 5 cut(s) 400, 498, 562, 582, 779
BmrI ACTGGG 1 cut(s) 656
BmsI GCATC 9 cut(s) 255, 335, 382, 505, 624, 656, 1102, 1168, 1227
BmuI ACTGGG 1 cut(s) 656
BpmI CTGGAG 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 907
BpuMI CCSGG 1 cut(s) 498
Bsa29I ATCGAT 1 cut(s) 1221
BsaJI CCNNGG 3 cut(s) 399, 560, 881
Bsc4I CCNNNNNNNGG 6 cut(s) 78, 79, 119, 587, 778, 1074
Bse1I ACTGG 1 cut(s) 651
Bse21I CCTNAGG 1 cut(s) 873
Bse3DI GCAATG 2 cut(s) 556, 1034
BseBI CCWGG 4 cut(s) 400, 562, 582, 779
BseCI ATCGAT 1 cut(s) 1221
BseDI CCNNGG 3 cut(s) 399, 560, 881
BseGI GGATG 3 cut(s) 202, 270, 1134
BseLI CCNNNNNNNGG 6 cut(s) 78, 79, 119, 587, 778, 1074
BseMI GCAATG 2 cut(s) 556, 1034
BseMII CTCAG 2 cut(s) 453, 533
BseNI ACTGG 1 cut(s) 651
BseXI GCAGC 4 cut(s) 446, 673, 736, 1196
BsgI GTGCAG 2 cut(s) 318, 981
Bsh1236I CGCG 3 cut(s) 166, 1002, 1010
BshFI GGCC 1 cut(s) 70
BshVI ATCGAT 1 cut(s) 1221
BsiHKAI GWGCWC 1 cut(s) 527
BsiSI CCGG 1 cut(s) 497
BslFI GGGAC 2 cut(s) 513, 891
BslI CCNNNNNNNGG 6 cut(s) 78, 79, 119, 587, 778, 1074
BsmFI GGGAC 2 cut(s) 513, 891
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 527
Bsp1407I TGTACA 1 cut(s) 1141
Bsp143I GATC 5 cut(s) 577, 868, 916, 935, 1222
BspACI CCGC 3 cut(s) 471, 1047, 1182
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 2 cut(s) 452, 532
BspDI ATCGAT 1 cut(s) 1221
BspFNI CGCG 3 cut(s) 166, 1002, 1010
BspLI GGNNCC 3 cut(s) 71, 579, 879
BspPI GGATC 3 cut(s) 572, 585, 863
BsrDI GCAATG 2 cut(s) 556, 1034
BsrGI TGTACA 1 cut(s) 1141
BsrI ACTGG 1 cut(s) 651
BssECI CCNNGG 3 cut(s) 399, 560, 881
BssMI GATC 5 cut(s) 577, 868, 916, 935, 1222
Bst2UI CCWGG 4 cut(s) 400, 562, 582, 779
Bst4CI ACNGT 3 cut(s) 374, 676, 885
Bst6I CTCTTC 2 cut(s) 806, 1161
BstAUI TGTACA 1 cut(s) 1141
BstC8I GCNNGC 6 cut(s) 703, 743, 747, 829, 1000, 1216
BstDEI CTNAG 4 cut(s) 439, 519, 630, 873
BstDSI CCRYGG 1 cut(s) 881
BstENI CCTNNNNNAGG 1 cut(s) 1072
BstF5I GGATG 3 cut(s) 202, 270, 1134
BstFNI CGCG 3 cut(s) 166, 1002, 1010
BstHHI GCGC 2 cut(s) 1004, 1012
BstKTI GATC 5 cut(s) 580, 871, 919, 938, 1225
BstMBI GATC 5 cut(s) 577, 868, 916, 935, 1222
BstMWI GCNNNNNNNGC 2 cut(s) 456, 468
BstNI CCWGG 4 cut(s) 400, 562, 582, 779
BstNSI RCATGY 2 cut(s) 438, 537
BstSCI CCNGG 5 cut(s) 398, 496, 560, 580, 777
BstSFI CTRYAG 1 cut(s) 1229
BstUI CGCG 3 cut(s) 166, 1002, 1010
BstV1I GCAGC 4 cut(s) 446, 673, 736, 1196
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
Bsu15I ATCGAT 1 cut(s) 1221
Bsu36I CCTNAGG 1 cut(s) 873
BsuRI GGCC 1 cut(s) 70
BsuTUI ATCGAT 1 cut(s) 1221
BtgI CCRYGG 1 cut(s) 881
BtgZI GCGATG 1 cut(s) 720
BtrI CACGTC 1 cut(s) 1029
BtsCI GGATG 3 cut(s) 202, 270, 1134
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 4 cut(s) 301, 379, 644, 935
Cac8I GCNNGC 6 cut(s) 703, 743, 747, 829, 1000, 1216
CaiI CAGNNNCTG 1 cut(s) 275
CfoI GCGC 2 cut(s) 1004, 1012
Cfr13I GGNCC 2 cut(s) 69, 878
ClaI ATCGAT 1 cut(s) 1221
CseI GACGC 2 cut(s) 384, 1016
Csp6I GTAC 2 cut(s) 886, 1142
CviAII CATG 5 cut(s) 435, 534, 952, 1013, 1211
CviJI RGCY 7 cut(s) 47, 70, 422, 445, 459, 615, 749
CviKI_1 RGCY 7 cut(s) 47, 70, 422, 445, 459, 615, 749
CviQI GTAC 2 cut(s) 886, 1142
DdeI CTNAG 4 cut(s) 439, 519, 630, 873
DpnI GATC 5 cut(s) 579, 870, 918, 937, 1224
DpnII GATC 5 cut(s) 577, 868, 916, 935, 1222
DraI TTTAAA 1 cut(s) 807
Eam1104I CTCTTC 2 cut(s) 806, 1161
EarI CTCTTC 2 cut(s) 806, 1161
Eco32I GATATC 1 cut(s) 961
Eco47I GGWCC 1 cut(s) 878
Eco81I CCTNAGG 1 cut(s) 873
EcoNI CCTNNNNNAGG 1 cut(s) 1072
EcoRII CCWGG 4 cut(s) 398, 560, 580, 777
EcoRV GATATC 1 cut(s) 961
EcoT22I ATGCAT 1 cut(s) 328
FaeI CATG 5 cut(s) 438, 537, 955, 1016, 1214
FaqI GGGAC 2 cut(s) 513, 891
FatI CATG 5 cut(s) 434, 533, 951, 1012, 1210
Fnu4HI GCNGC 5 cut(s) 460, 687, 750, 1182, 1185
FokI GGATG 3 cut(s) 209, 277, 1141
Fsp4HI GCNGC 5 cut(s) 460, 687, 750, 1182, 1185
GlaI GCGC 2 cut(s) 1003, 1011
GluI GCNGC 5 cut(s) 460, 687, 750, 1182, 1185
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 1 cut(s) 70
HapII CCGG 1 cut(s) 497
HgaI GACGC 2 cut(s) 384, 1016
HhaI GCGC 2 cut(s) 1004, 1012
Hin1II CATG 5 cut(s) 438, 537, 955, 1016, 1214
Hin6I GCGC 2 cut(s) 1002, 1010
HinP1I GCGC 2 cut(s) 1002, 1010
HinfI GANTC 6 cut(s) 104, 272, 305, 814, 911, 1080
HpaII CCGG 1 cut(s) 497
HphI GGTGA 3 cut(s) 65, 276, 401
Hpy166II GTNNAC 2 cut(s) 432, 1094
Hpy188I TCNGA 7 cut(s) 109, 442, 511, 522, 766, 843, 916
Hpy188III TCNNGA 2 cut(s) 120, 212
Hpy8I GTNNAC 2 cut(s) 432, 1094
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 2 cut(s) 533, 968
HpyCH4III ACNGT 3 cut(s) 374, 676, 885
HpyCH4IV ACGT 1 cut(s) 1028
HpyF10VI GCNNNNNNNGC 2 cut(s) 456, 468
HpyF3I CTNAG 4 cut(s) 439, 519, 630, 873
HpySE526I ACGT 1 cut(s) 1028
Hsp92II CATG 5 cut(s) 438, 537, 955, 1016, 1214
HspAI GCGC 2 cut(s) 1002, 1010
Kzo9I GATC 5 cut(s) 577, 868, 916, 935, 1222
Lsp1109I GCAGC 4 cut(s) 446, 673, 736, 1196
LweI GCATC 9 cut(s) 255, 335, 382, 505, 624, 656, 1102, 1168, 1227
MaeII ACGT 1 cut(s) 1028
MaeIII GTNAC 1 cut(s) 233
MalI GATC 5 cut(s) 579, 870, 918, 937, 1224
MboI GATC 5 cut(s) 577, 868, 916, 935, 1222
MboII GAAGA 8 cut(s) 103, 239, 368, 645, 823, 938, 955, 1178
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 1 cut(s) 527
MluCI AATT 6 cut(s) 13, 170, 218, 406, 795, 1122
MlyI GAGTC 1 cut(s) 823
MmeI TCCRAC 1 cut(s) 1095
Mph1103I ATGCAT 1 cut(s) 328
MseI TTAA 4 cut(s) 678, 806, 987, 1119
MslI CAYNNNNRTG 1 cut(s) 1198
MspA1I CMGCKG 1 cut(s) 1047
MspI CCGG 1 cut(s) 497
MspR9I CCNGG 5 cut(s) 400, 498, 562, 582, 779
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 4 cut(s) 400, 562, 582, 779
MvnI CGCG 3 cut(s) 166, 1002, 1010
MwoI GCNNNNNNNGC 2 cut(s) 456, 468
NciI CCSGG 1 cut(s) 498
NdeII GATC 5 cut(s) 577, 868, 916, 935, 1222
NlaIII CATG 5 cut(s) 438, 537, 955, 1016, 1214
NlaIV GGNNCC 3 cut(s) 71, 579, 879
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 2 cut(s) 438, 537
PciI ACATGT 1 cut(s) 533
PctI GAATGC 1 cut(s) 703
PfeI GAWTC 5 cut(s) 104, 272, 305, 911, 1080
PkrI GCNGC 5 cut(s) 461, 688, 751, 1183, 1186
PleI GAGTC 1 cut(s) 822
PpsI GAGTC 1 cut(s) 822
PscI ACATGT 1 cut(s) 533
Psp6I CCWGG 4 cut(s) 398, 560, 580, 777
PspGI CCWGG 4 cut(s) 398, 560, 580, 777
PspN4I GGNNCC 3 cut(s) 71, 579, 879
PspPI GGNCC 2 cut(s) 69, 878
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 1 cut(s) 577
RsaI GTAC 2 cut(s) 887, 1143
RsaNI GTAC 2 cut(s) 886, 1142
RseI CAYNNNNRTG 1 cut(s) 1198
SaqAI TTAA 4 cut(s) 678, 806, 987, 1119
SatI GCNGC 5 cut(s) 460, 687, 750, 1182, 1185
Sau3AI GATC 5 cut(s) 577, 868, 916, 935, 1222
Sau96I GGNCC 2 cut(s) 69, 878
SchI GAGTC 1 cut(s) 823
ScrFI CCNGG 5 cut(s) 400, 498, 562, 582, 779
SduI GDGCHC 1 cut(s) 527
SfaNI GCATC 9 cut(s) 255, 335, 382, 505, 624, 656, 1102, 1168, 1227
SfcI CTRYAG 1 cut(s) 1229
SinI GGWCC 1 cut(s) 878
SmiMI CAYNNNNRTG 1 cut(s) 1198
SmlI CTYRAG 1 cut(s) 922
SmoI CTYRAG 1 cut(s) 922
Sse9I AATT 6 cut(s) 13, 170, 218, 406, 795, 1122
SsiI CCGC 3 cut(s) 471, 1047, 1182
StyD4I CCNGG 5 cut(s) 398, 496, 560, 580, 777
TaaI ACNGT 3 cut(s) 374, 676, 885
TaiI ACGT 1 cut(s) 1031
TaqI TCGA 5 cut(s) 211, 308, 793, 1110, 1221
TasI AATT 6 cut(s) 13, 170, 218, 406, 795, 1122
TatI WGTACW 1 cut(s) 1141
TauI GCSGC 1 cut(s) 1184
TfiI GAWTC 5 cut(s) 104, 272, 305, 911, 1080
Tru1I TTAA 4 cut(s) 678, 806, 987, 1119
Tru9I TTAA 4 cut(s) 678, 806, 987, 1119
TscAI CASTG 4 cut(s) 301, 379, 651, 935
TseI GCWGC 4 cut(s) 459, 686, 749, 1184
TspDTI ATGAA 4 cut(s) 585, 723, 987, 1199
TspRI CASTG 4 cut(s) 301, 379, 651, 935
VpaK11BI GGWCC 1 cut(s) 878
XagI CCTNNNNNAGG 1 cut(s) 1072
XapI RAATTY 2 cut(s) 795, 1122
XceI RCATGY 2 cut(s) 438, 537
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.