Rorug02G0193200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011893
Physical Location & Seq
Reverse (-)
17997108 .. 17998740
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0193200.1

Sequence Viewer

Length: 612 bp
ATGAGCAGCAGCAGCAGCAGCGAGGAAGATGGAGATGCGGCGTGGAAAGCCGCCATTAGCTCAGCCGCGGCAGGTGCCTCCTCTTACATCAACGGCCTCTCCTCCAAACCAAACCAGCTGCCTCCTCAAGACTCCAACCACACCAAACTCCCCAAGCACTACCAAATCAAGGCACAAAAGCTTTTGGATGACATCATAGGGAAGTCATTGGAGATAGTGCACAACTCTATTCCTGAACCAGATGTGATTAATGAGGAGGAAGTTGGTATTCGCTTGTTCAAAAATGCTCCCCCAGGAATAGTTTTTGATCATGTGGATGAACAACCACCTAGAAGGAGACCAAGAATTCTTCCGGGAAAAGAAATTCATGAGAAATCAAAGAAGTTTAAACAACAAATCCAATCCGTTGCTGTTGATGGGAATGAGATAGTGTCTGAAGCAAGAGATAGATGTCTGAGAGCATTGTCTAGGCTAGAAGCTAAAGAGGCAGCAGCAAAAGAAGCAGCCAAAAGAGAAGAGGAAAGAGTTGCACAACTCAAAAAAGTTAGGGGAGAAAGATGGCTACCGTCTATTGCCAGAGAAAGGCAGTTCAAAGCCATTAGCAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.62

Weight (kDa)

9.36

Isoelectric Point (pI)

59.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10110 AT5G65120 AT5G65120
fragaria_vesca FvH4_1g21240
malus_domestica MD01G1027000.v1.1 MD15G1327000.v1.1
prunus_persica Prupe.6G182000_v2.0.a1 Prupe.6G182000_v2.0.a1
pyrus_communis pycom01g05490 pycom395g00050
rosa_chinensis RchiOBHm_Chr2g0115081
rosa_laevigata RLG00000018155
rosa_multiflora Rmu_sc0002784.1_g000001
rosa_roxburghii Rroxscaffold_2G00130550
rosa_rugosa Rorug02G0193200
rosa_samantha Rh2AG251700 Rh2BG261200 Rh2DG259800
rosa_wichuraiana Rw2G019630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 62
Acc36I ACCTGC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 74
AccII CGCG 1 cut(s) 68
AciI CCGC 4 cut(s) 38, 51, 66, 68
AcsI RAATTY 2 cut(s) 345, 363
AcuI CTGAAG 1 cut(s) 456
AfiI CCNNNNNNNGG 2 cut(s) 169, 582
AgsI TTSAA 2 cut(s) 280, 592
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 4 cut(s) 60, 118, 181, 479
AluI AGCT 4 cut(s) 60, 118, 181, 479
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 331
Alw44I GTGCAC 1 cut(s) 218
AoxI GGCC 1 cut(s) 94
ApaLI GTGCAC 1 cut(s) 218
ApeKI GCWGC 9 cut(s) 6, 9, 12, 15, 18, 118, 488, 491, 503
ApoI RAATTY 2 cut(s) 345, 363
AseI ATTAAT 1 cut(s) 249
AsuC2I CCSGG 1 cut(s) 354
BaeGI GKGCMC 1 cut(s) 222
BanI GGYRCC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 9 cut(s) 18, 21, 24, 27, 30, 105, 500, 503, 515
BccI CCATC 3 cut(s) 23, 410, 552
BceAI ACGGC 1 cut(s) 109
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 331
BfaI CTAG 3 cut(s) 330, 468, 473
BfuAI ACCTGC 1 cut(s) 62
BlpI GCTNAGC 1 cut(s) 61
Bme1390I CCNGG 2 cut(s) 294, 354
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 2 cut(s) 294, 354
BmsI GCATC 1 cut(s) 25
Bpu1102I GCTNAGC 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 111
BpuMI CCSGG 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 66, 292
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 582
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 66, 292
BseGI GGATG 2 cut(s) 193, 322
BseLI CCNNNNNNNGG 2 cut(s) 169, 582
BseMII CTCAG 2 cut(s) 75, 446
BseRI GAGGAG 4 cut(s) 70, 91, 114, 269
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 9 cut(s) 18, 21, 24, 27, 30, 105, 500, 503, 515
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 169, 582
BsmAI GTCTC 1 cut(s) 331
BsnI GGCC 1 cut(s) 96
Bso31I GGTCTC 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 1 cut(s) 307
Bsp1720I GCTNAGC 1 cut(s) 61
BspACI CCGC 4 cut(s) 38, 51, 66, 68
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 2 cut(s) 74, 447
BspFNI CGCG 1 cut(s) 68
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 331
BssECI CCNNGG 2 cut(s) 66, 292
BssMI GATC 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 567
Bst6I CTCTTC 1 cut(s) 510
BstDEI CTNAG 2 cut(s) 61, 455
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 193, 322
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 7 cut(s) 12, 15, 18, 47, 74, 485, 500
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 292, 352
BstSLI GKGCMC 1 cut(s) 222
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 9 cut(s) 18, 21, 24, 27, 30, 105, 500, 503, 515
BsuRI GGCC 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 193, 322
BveI ACCTGC 1 cut(s) 62
CciI TCATGA 1 cut(s) 367
Cfr42I CCGCGG 1 cut(s) 69
CviAII CATG 2 cut(s) 311, 368
DdeI CTNAG 2 cut(s) 61, 455
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DraI TTTAAA 1 cut(s) 388
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Eco31I GGTCTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 456
EcoRI GAATTC 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 292
FaeI CATG 2 cut(s) 314, 371
FaiI YATR 3 cut(s) 197, 312, 369
FatI CATG 2 cut(s) 310, 367
FbaI TGATCA 1 cut(s) 307
FokI GGATG 2 cut(s) 200, 329
FspBI CTAG 3 cut(s) 330, 468, 473
HaeIII GGCC 1 cut(s) 96
HapII CCGG 1 cut(s) 353
Hin1II CATG 2 cut(s) 314, 371
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 1 cut(s) 131
HpaII CCGG 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 2 cut(s) 436, 456
Hpy188III TCNNGA 3 cut(s) 128, 233, 368
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 1 cut(s) 567
HpyCH4V TGCA 2 cut(s) 220, 530
HpyF10VI GCNNNNNNNGC 7 cut(s) 12, 15, 18, 47, 74, 485, 500
HpyF3I CTNAG 2 cut(s) 61, 455
Hsp92II CATG 2 cut(s) 314, 371
Ksp22I TGATCA 1 cut(s) 307
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 8 cut(s) 57, 128, 246, 252, 279, 306, 366, 589
Lsp1109I GCAGC 9 cut(s) 18, 21, 24, 27, 30, 105, 500, 503, 515
LweI GCATC 1 cut(s) 25
MaeI CTAG 3 cut(s) 330, 468, 473
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 3 cut(s) 38, 341, 527
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 2 cut(s) 345, 363
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 159
MseI TTAA 2 cut(s) 249, 387
MslI CAYNNNNRTG 1 cut(s) 315
MspA1I CMGCKG 2 cut(s) 68, 118
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 2 cut(s) 294, 354
MssI GTTTAAAC 1 cut(s) 388
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 7 cut(s) 12, 15, 18, 47, 74, 485, 500
NciI CCSGG 1 cut(s) 354
NdeII GATC 1 cut(s) 307
NlaIII CATG 2 cut(s) 314, 371
NlaIV GGNNCC 1 cut(s) 76
PagI TCATGA 1 cut(s) 367
PaqCI CACCTGC 1 cut(s) 62
PfoI TCCNGGA 1 cut(s) 352
PleI GAGTC 1 cut(s) 125
PmeI GTTTAAAC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 125
PshBI ATTAAT 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 315
SacII CCGCGG 1 cut(s) 69
SaqAI TTAA 2 cut(s) 249, 387
Sau3AI GATC 1 cut(s) 307
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 294, 354
SduI GDGCHC 1 cut(s) 222
SetI ASST 6 cut(s) 62, 76, 120, 183, 331, 481
SfaNI GCATC 1 cut(s) 25
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 2 cut(s) 345, 363
SsiI CCGC 4 cut(s) 38, 51, 66, 68
SspMI CTAG 3 cut(s) 330, 468, 473
StyD4I CCNGG 2 cut(s) 292, 352
TaaI ACNGT 1 cut(s) 567
TasI AATT 2 cut(s) 345, 363
TauI GCSGC 4 cut(s) 41, 53, 68, 71
Tru1I TTAA 2 cut(s) 249, 387
Tru9I TTAA 2 cut(s) 249, 387
TseI GCWGC 9 cut(s) 6, 9, 12, 15, 18, 118, 488, 491, 503
TspDTI ATGAA 2 cut(s) 333, 356
TspGWI ACGGA 1 cut(s) 394
VneI GTGCAC 1 cut(s) 218
VspI ATTAAT 1 cut(s) 249
XapI RAATTY 2 cut(s) 345, 363
XspI CTAG 3 cut(s) 330, 468, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.