Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007243

Physical Location & Seq

Genomic Coordinates Forward (+)

3206140 .. 3207136

Gene Structure 997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGTATCGTTGAAAACATTCGTTCCCTTAAATTTGAAGTGAAAATCGTGGAAGCTAGAAACGTAGAGCTCAAGTCATCGCCAACCACTCTCTTCGTTAGGTTCTATCTCCATGCAGGGAATAACAGTAAGATTGAACTAAACACTCCAGAGATCCGTTCGAGATCAGACTGTGAGGTCATTTCCTGGAACCAATCATTCGGTCTGGAGTGCCAAGGGAACGAAACCGCGGTCGAGGAATTGAAGCAACAAAGTGTTGTTTTCGAACTACGGAGAAGGAAAACGACGCCGTTTTTGAAGAAGTGGTCGAAATCAGAGTTGGTGGGTAGAGGAAAGATTTTTTGGAAATCGGTTATAGAGACTGATGGGATGGAAATAGAGAGATTTGTAGTGATGGATGAGACAAAAGATCACGTTCTGGAAGATTGTGATAAGCATAAACCTCTTTTGTTGAAGATAGCTTTAAAAGTGCAAGCTTCAAAAATCGTGAACACTAAGAGAGTGGAAGATCTTTGTGAGTGTAAAGATTGTAGAACATGTAACTGCGTAGATTATGAAGCTTTTGTTGTAGCTTGTGCGTTAGCTGGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

197

Amino Acids

22.58

Weight (kDa)

7.51

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10210 AT5G65030
fragaria_vesca	FvH4_1g20980
prunus_persica	Prupe.6G186100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114461 RchiOBHm_Chr2g0114471
rosa_laevigata	RLG00000018103 RLG00000018104
rosa_multiflora	Rmu_co8319255.1_g000001 Rmu_sc0000431.1_g000035 Rmu_sc0000431.1_g000038 Rmu_sc0003151.1_g000023 Rmu_sc0017189.1_g000003
rosa_roxburghii	Rroxscaffold_2G00130170 Rroxscaffold_2G00130180
rosa_rugosa	Rorug02G0190500 Rorug02G0190500
rosa_samantha	Rh2AG247600 Rh2BG257600 Rh2BG257700 Rh2CG251100 Rh2DG255700 Rh2DG255800
rosa_wichuraiana	Rw2G019260 Rw2G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AccII	CGCG	1 cut(s)	230
AciI	CCGC	2 cut(s)	228, 230
AclWI	GGATC	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	536
AgsI	TTSAA	7 cut(s)	14, 38, 137, 244, 298, 454, 480
AjnI	CCWGG	1 cut(s)	185
AjuI	GAANNNNNNNTTGG	4 cut(s)	302, 325, 334, 357
AluBI	AGCT	7 cut(s)	56, 70, 461, 476, 560, 572, 584
AluI	AGCT	7 cut(s)	56, 70, 461, 476, 560, 572, 584
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	2 cut(s)	353, 395
AlwI	GGATC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	32
ArsI	GACNNNNNNTTYG	4 cut(s)	216, 248, 277, 309
Asp700I	GAANNNNTTC	1 cut(s)	18
AsuII	TTCGAA	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	72
BccI	CCATC	3 cut(s)	359, 364, 388
BceAI	ACGGC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	187
BcoDI	GTCTC	2 cut(s)	353, 395
BfaI	CTAG	1 cut(s)	57
BglII	AGATCT	1 cut(s)	508
Bme1390I	CCNGG	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	187
BpmI	CTGGAG	2 cut(s)	132, 227
Bpu14I	TTCGAA	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	56
BsaHI	GRCGYC	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	214, 228
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	214, 228
BseGI	GGATG	2 cut(s)	375, 403
BseYI	CCCAGC	1 cut(s)	584
Bsh1236I	CGCG	1 cut(s)	230
Bsh1285I	CGRYCG	1 cut(s)	234
BsiEI	CGRYCG	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	72
BsmAI	GTCTC	2 cut(s)	353, 395
Bsp119I	TTCGAA	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	4 cut(s)	153, 164, 409, 508
BspACI	CCGC	2 cut(s)	228, 230
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	148
BspT104I	TTCGAA	1 cut(s)	264
BssECI	CCNNGG	2 cut(s)	214, 228
BssMI	GATC	4 cut(s)	153, 164, 409, 508
BssNI	GRCGYC	1 cut(s)	287
BssT1I	CCWWGG	1 cut(s)	214
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	2 cut(s)	128, 173
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	287
BstBI	TTCGAA	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	1 cut(s)	495
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	375, 403
BstFNI	CGCG	1 cut(s)	230
BstKTI	GATC	4 cut(s)	156, 167, 412, 511
BstMAI	GTCTC	2 cut(s)	353, 395
BstMBI	GATC	4 cut(s)	153, 164, 409, 508
BstMCI	CGRYCG	1 cut(s)	234
BstNI	CCWGG	1 cut(s)	187
BstNSI	RCATGY	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	185
BstUI	CGCG	1 cut(s)	230
BstX2I	RGATCY	2 cut(s)	153, 508
BstYI	RGATCY	2 cut(s)	153, 508
BtgI	CCRYGG	1 cut(s)	228
BtgZI	GCGATG	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	375, 403
Cac8I	GCNNGC	1 cut(s)	474
Cfr42I	CCGCGG	1 cut(s)	231
CseI	GACGC	1 cut(s)	295
CviAII	CATG	2 cut(s)	113, 537
CviJI	RGCY	7 cut(s)	56, 70, 461, 476, 560, 572, 584
CviKI_1	RGCY	7 cut(s)	56, 70, 461, 476, 560, 572, 584
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	4 cut(s)	155, 166, 411, 510
DpnII	GATC	4 cut(s)	153, 164, 409, 508
DraI	TTTAAA	1 cut(s)	465
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	2 cut(s)	116, 540
FaiI	YATR	5 cut(s)	114, 356, 438, 538, 555
FatI	CATG	2 cut(s)	112, 536
FokI	GGATG	2 cut(s)	382, 410
FriOI	GRGCYC	1 cut(s)	72
FspBI	CTAG	1 cut(s)	57
GsaI	CCCAGC	1 cut(s)	588
GsuI	CTGGAG	2 cut(s)	132, 227
HgaI	GACGC	1 cut(s)	295
Hin1I	GRCGYC	1 cut(s)	287
Hin1II	CATG	2 cut(s)	116, 540
HindIII	AAGCTT	2 cut(s)	474, 558
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	2 cut(s)	169, 316
Hpy188III	TCNNGA	5 cut(s)	149, 162, 206, 419, 487
Hpy8I	GTNNAC	1 cut(s)	490
Hpy99I	CGWCG	1 cut(s)	289
HpyAV	CCTTC	1 cut(s)	270
HpyCH4III	ACNGT	2 cut(s)	128, 173
HpyCH4IV	ACGT	2 cut(s)	63, 414
HpyCH4V	TGCA	2 cut(s)	116, 472
HpyF3I	CTNAG	1 cut(s)	495
HpySE526I	ACGT	2 cut(s)	63, 414
Hsp92I	GRCGYC	1 cut(s)	287
Hsp92II	CATG	2 cut(s)	116, 540
KspI	CCGCGG	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	153, 164, 409, 508
LpnPI	CCDG	7 cut(s)	102, 162, 172, 191, 199, 404, 570
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	2 cut(s)	63, 414
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	4 cut(s)	155, 166, 411, 510
MboI	GATC	4 cut(s)	153, 164, 409, 508
MboII	GAAGA	5 cut(s)	85, 310, 434, 466, 518
MflI	RGATCY	2 cut(s)	153, 508
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	2 cut(s)	32, 239
MnlI	CCTC	4 cut(s)	169, 229, 323, 453
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	2 cut(s)	30, 464
MspA1I	CMGCKG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	187
MvnI	CGCG	1 cut(s)	230
NdeII	GATC	4 cut(s)	153, 164, 409, 508
NlaIII	CATG	2 cut(s)	116, 540
NlaIV	GGNNCC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	540
NspV	TTCGAA	1 cut(s)	264
PciI	ACATGT	1 cut(s)	536
PdmI	GAANNNNTTC	1 cut(s)	18
PfoI	TCCNGGA	1 cut(s)	185
PscI	ACATGT	1 cut(s)	536
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	185
PspFI	CCCAGC	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	191
PsuI	RGATCY	2 cut(s)	153, 508
SacI	GAGCTC	1 cut(s)	72
SacII	CCGCGG	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	30, 464
Sau3AI	GATC	4 cut(s)	153, 164, 409, 508
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	72
Sfr303I	CCGCGG	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	264
SgrBI	CCGCGG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	2 cut(s)	32, 239
SsiI	CCGC	2 cut(s)	228, 230
SspMI	CTAG	1 cut(s)	57
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	128, 173
TaiI	ACGT	2 cut(s)	66, 417
TaqI	TCGA	4 cut(s)	161, 234, 264, 308
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	2 cut(s)	32, 239
Tru1I	TTAA	2 cut(s)	30, 464
Tru9I	TTAA	2 cut(s)	30, 464
TspDTI	ATGAA	1 cut(s)	570
TspGWI	ACGGA	2 cut(s)	146, 286
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	1 cut(s)	540
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.