Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007243

Physical Location & Seq

Genomic Coordinates Forward (+)

19474840 .. 19475445

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G186100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGTTCATCACAGTTTTCTTCTCTCAGCTGTGAGTTGAGGATCATACAAGCCAAAAACATTGAGTTCAAGACCACAGGAAACCTGTTTGTTAGATACTATATTTCAGCAGGAAACAAGGGAAGAATTAGGCTCAACACTAGAGAAATCTCTGCCAAGTCTAACCATGTTTGGAACGAGTCCATCTCGTTGGAGTGCTCTGGAAGCGAGACGGACGCCATGGGCCTAAAGCAAGAAAGCATAGTTTTTGAGCTCCGCTGGAGGAGCACTGTGCCGGTTTTTGGCAGAATTGGGGGGTCACAACTCTTGGGAAGGGCAGAGGTTCAATGGAAGGAAGTCCTTGAGTCACCAAACATGGAGTTGAACCAGTGGGTCTCAGTGGTTTCAACAAGCGGGCATGCTCTTGAAGGCGTCAAACCACCTAAACTACAAGTAGGAATCAAGGTTCAAGTTCAAGCAGACCATGTGGAATTGGAGAAAAGAAGACAGAGAAACAGAAGGATGAAGAAGTGGGATGAGTGCGGTTGTGAAAAGGGTCATGGTCACAGTTGCACTTGTTCAGATTATGAAATATTTGCACTAGCAGCTGCCCTGGAGGCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

202

Amino Acids

22.64

Weight (kDa)

8.75

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10210 AT5G65030
fragaria_vesca	FvH4_1g20980
prunus_persica	Prupe.6G186100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114461 RchiOBHm_Chr2g0114471
rosa_laevigata	RLG00000018103 RLG00000018104
rosa_multiflora	Rmu_co8319255.1_g000001 Rmu_sc0000431.1_g000035 Rmu_sc0000431.1_g000038 Rmu_sc0003151.1_g000023 Rmu_sc0017189.1_g000003
rosa_roxburghii	Rroxscaffold_2G00130170 Rroxscaffold_2G00130180
rosa_rugosa	Rorug02G0190500 Rorug02G0190500
rosa_samantha	Rh2AG247600 Rh2BG257600 Rh2BG257700 Rh2CG251100 Rh2DG255700 Rh2DG255800
rosa_wichuraiana	Rw2G019260 Rw2G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	256, 393, 522
AclWI	GGATC	1 cut(s)	50
AcyI	GRCGYC	2 cut(s)	216, 411
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	7 cut(s)	70, 326, 364, 387, 407, 449, 455
AjnI	CCWGG	1 cut(s)	591
AloI	GAACNNNNNNTCC	2 cut(s)	429, 461
AluBI	AGCT	3 cut(s)	30, 253, 587
AluI	AGCT	3 cut(s)	30, 253, 587
Alw21I	GWGCWC	3 cut(s)	200, 255, 269
Alw26I	GTCTC	2 cut(s)	203, 379
AlwI	GGATC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	584, 587
AspS9I	GGNCC	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	339
BanII	GRGCYC	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	490
Bbv12I	GWGCWC	3 cut(s)	200, 255, 269
BbvI	GCAGC	2 cut(s)	574, 596
BccI	CCATC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	593
BcoDI	GTCTC	2 cut(s)	203, 379
BfaI	CTAG	2 cut(s)	141, 581
BglI	GCCNNNNNGGC	1 cut(s)	596
BisI	GCNGC	2 cut(s)	585, 588
BlsI	GCNGC	2 cut(s)	586, 589
Bme1390I	CCNGG	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	593
BpiI	GAAGAC	1 cut(s)	490
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpmI	CTGGAG	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	362
BsaHI	GRCGYC	2 cut(s)	216, 411
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	2 cut(s)	219, 591
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	219, 591
BseGI	GGATG	2 cut(s)	507, 520
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	2 cut(s)	40, 390
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	277
BseXI	GCAGC	2 cut(s)	574, 596
BshFI	GGCC	1 cut(s)	225
BsiHKAI	GWGCWC	3 cut(s)	200, 255, 269
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	203, 379
BsmBI	CGTCTC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	225
Bso31I	GGTCTC	1 cut(s)	379
Bsp1286I	GDGCHC	3 cut(s)	200, 255, 269
Bsp143I	GATC	1 cut(s)	42
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	3 cut(s)	256, 393, 522
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	2 cut(s)	39, 389
BspPI	GGATC	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	219, 591
BssMI	GATC	1 cut(s)	42
BssNI	GRCGYC	2 cut(s)	216, 411
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	3 cut(s)	15, 271, 548
BstACI	GRCGYC	2 cut(s)	216, 411
BstC8I	GCNNGC	2 cut(s)	395, 399
BstDEI	CTNAG	2 cut(s)	26, 376
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	507, 520
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	2 cut(s)	203, 379
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 264, 584, 596
BstNI	CCWGG	1 cut(s)	593
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	591
BstV1I	GCAGC	2 cut(s)	574, 596
BstV2I	GAAGAC	1 cut(s)	490
BstXI	CCANNNNNNTGG	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	507, 520
BtsIMutI	CAGTG	3 cut(s)	267, 374, 384
Cac8I	GCNNGC	2 cut(s)	395, 399
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	223
CseI	GACGC	2 cut(s)	224, 400
CviAII	CATG	6 cut(s)	167, 220, 355, 398, 464, 539
CviJI	RGCY	7 cut(s)	30, 53, 133, 225, 253, 587, 599
CviKI_1	RGCY	7 cut(s)	30, 53, 133, 225, 253, 587, 599
DdeI	CTNAG	2 cut(s)	26, 376
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Ecl136II	GAGCTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	379
Eco53kI	GAGCTC	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	591
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	6 cut(s)	170, 223, 358, 401, 467, 542
FatI	CATG	6 cut(s)	166, 219, 354, 397, 463, 538
FauI	CCCGC	1 cut(s)	386
Fnu4HI	GCNGC	2 cut(s)	585, 588
FokI	GGATG	2 cut(s)	514, 527
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	585, 588
FspBI	CTAG	2 cut(s)	141, 581
GluI	GCNGC	2 cut(s)	585, 588
GsuI	CTGGAG	1 cut(s)	280
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	1 cut(s)	275
HgaI	GACGC	2 cut(s)	224, 400
Hin1I	GRCGYC	2 cut(s)	216, 411
Hin1II	CATG	6 cut(s)	170, 223, 358, 401, 467, 542
HinfI	GANTC	3 cut(s)	179, 344, 438
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	339
Hpy188I	TCNGA	1 cut(s)	562
Hpy188III	TCNNGA	3 cut(s)	70, 201, 404
HpyAV	CCTTC	4 cut(s)	306, 325, 401, 492
HpyCH4III	ACNGT	3 cut(s)	15, 271, 548
HpyCH4V	TGCA	2 cut(s)	552, 578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 264, 584, 596
HpyF3I	CTNAG	2 cut(s)	26, 376
Hsp92I	GRCGYC	2 cut(s)	216, 411
Hsp92II	CATG	6 cut(s)	170, 223, 358, 401, 467, 542
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	2 cut(s)	258, 264
LpnPI	CCDG	8 cut(s)	63, 96, 98, 186, 244, 288, 380, 578
Lsp1109I	GCAGC	2 cut(s)	574, 596
MaeI	CTAG	2 cut(s)	141, 581
MaeIII	GTNAC	3 cut(s)	297, 345, 542
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	4 cut(s)	12, 135, 495, 517
MhlI	GDGCHC	3 cut(s)	200, 255, 269
MluCI	AATT	3 cut(s)	126, 288, 470
MlyI	GAGTC	2 cut(s)	188, 353
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	4 cut(s)	33, 255, 313, 589
MspA1I	CMGCKG	3 cut(s)	30, 258, 587
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	593
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	4 cut(s)	204, 264, 584, 596
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	6 cut(s)	170, 223, 358, 401, 467, 542
NmuCI	GTSAC	3 cut(s)	297, 345, 542
NspI	RCATGY	1 cut(s)	401
PaeI	GCATGC	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	438
PkrI	GCNGC	2 cut(s)	586, 589
PleI	GAGTC	2 cut(s)	187, 352
PpsI	GAGTC	2 cut(s)	187, 352
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PspPI	GGNCC	1 cut(s)	223
PvuII	CAGCTG	2 cut(s)	30, 587
SacI	GAGCTC	1 cut(s)	255
SatI	GCNGC	2 cut(s)	585, 588
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	1 cut(s)	223
SchI	GAGTC	2 cut(s)	188, 353
ScrFI	CCNGG	1 cut(s)	593
SduI	GDGCHC	3 cut(s)	200, 255, 269
SetI	ASST	7 cut(s)	32, 87, 255, 324, 424, 447, 589
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SphI	GCATGC	1 cut(s)	401
Sse9I	AATT	3 cut(s)	126, 288, 470
SsiI	CCGC	3 cut(s)	256, 393, 522
SspI	AATATT	1 cut(s)	573
SspMI	CTAG	2 cut(s)	141, 581
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	591
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	15, 271, 548
TasI	AATT	3 cut(s)	126, 288, 470
TfiI	GAWTC	1 cut(s)	438
TscAI	CASTG	3 cut(s)	274, 374, 384
TseFI	GTSAC	3 cut(s)	297, 345, 542
TseI	GCWGC	2 cut(s)	584, 587
Tsp45I	GTSAC	3 cut(s)	297, 345, 542
TspDTI	ATGAA	2 cut(s)	518, 582
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	3 cut(s)	274, 374, 384
XceI	RCATGY	1 cut(s)	401
XspI	CTAG	2 cut(s)	141, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.