Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002083

Physical Location & Seq

Genomic Coordinates Forward (+)

17783539 .. 17786332

Gene Structure 2794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0190500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGATCCTGGAAACCTGGGAGAGATATTGAAGCACTTGGAGACGCAGAATGAGCTCCTTACAAAAGCGTCTGAATCAGTGCTACAAGAACTGTCTAATCTTCAGGGAGAAGAAGAAATGATGATGCGCAAGTACTACGCTATTATGTCGGAGCATGGTAAAGTTAAAAAGGTTCAAGAACTTCATGAATTTTGGCAGAAGCATGGCCATGGAAAAGTTTCAACTGATACTGAAATCGGAAGCTCTACTGCATTAGTCACTGCTACTAGCAAAGAAGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

94

Amino Acids

10.62

Weight (kDa)

5.3

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68470
fragaria_vesca	FvH4_1g20990 FvH4_1g21000 FvH4_1g21020
malus_domestica	MD01G1028500.v1.1 MD01G1028700.v1.1 MD15G1324800.v1.1 MD15G1324900.v1.1 MD15G1325000.v1.1 MD15G1325100.v1.1
prunus_persica	Prupe.6G185700_v2.0.a1 Prupe.6G185800_v2.0.a1 Prupe.6G186000_v2.0.a1
pyrus_communis	pycom01g05660 pycom01g05690 pycom15g28660 pycom15g28670
rosa_chinensis	RchiOBHm_Chr2g0114491 RchiOBHm_Chr2g0114511
rosa_laevigata	RLG00000018105 RLG00000018109 RLG00000018110
rosa_multiflora	Rmu_co8320661.1_g000001 Rmu_sc0000371.1_g000001 Rmu_sc0000371.1_g000005 Rmu_sc0015718.1_g000003 Rmu_sc0015718.1_g000009
rosa_roxburghii	Rroxscaffold_2G00130190 Rroxscaffold_2G00130220 Rroxscaffold_2G00130250
rosa_rugosa	Rorug02G0190500 Rorug02G0190500
rosa_samantha	Rh2AG248000 Rh2AG248200 Rh2AG248400 Rh2BG257800 Rh2BG258000 Rh2CG251400 Rh2CG251500 Rh2CG251700 Rh2DG256200 Rh2DG256400
rosa_wichuraiana	Rw2G019290 Rw2G019310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	128
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	31, 176, 222
AjnI	CCWGG	2 cut(s)	7, 15
AluBI	AGCT	2 cut(s)	55, 243
AluI	AGCT	2 cut(s)	55, 243
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	207
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	57
BciT130I	CCWGG	2 cut(s)	9, 17
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	1 cut(s)	267
BmcAI	AGTACT	1 cut(s)	134
Bme1390I	CCNGG	2 cut(s)	9, 17
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	9, 17
BmsI	GCATC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	16, 208
BseBI	CCWGG	2 cut(s)	9, 17
BseDI	CCNNGG	2 cut(s)	16, 208
BshFI	GGCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	57
BsmAI	GTCTC	1 cut(s)	35
BsmBI	CGTCTC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	4
Bsp19I	CCATGG	1 cut(s)	208
BspANI	GGCC	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	16, 208
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	1 cut(s)	208
Bst2UI	CCWGG	2 cut(s)	9, 17
Bst4CI	ACNGT	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	2 cut(s)	9, 17
BstSCI	CCNGG	2 cut(s)	7, 15
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	84, 258
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	1 cut(s)	129
CseI	GACGC	2 cut(s)	52, 57
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	4 cut(s)	155, 185, 203, 209
CviJI	RGCY	3 cut(s)	55, 207, 243
CviKI_1	RGCY	3 cut(s)	55, 207, 243
CviQI	GTAC	1 cut(s)	133
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
EaeI	YGGCCR	1 cut(s)	205
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	7, 15
EcoT14I	CCWWGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	208
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	4 cut(s)	158, 188, 206, 212
FaiI	YATR	5 cut(s)	146, 156, 186, 204, 210
FatI	CATG	4 cut(s)	154, 184, 202, 208
FriOI	GRGCYC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	267
FspI	TGCGCA	1 cut(s)	128
GlaI	GCGC	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	207
HgaI	GACGC	2 cut(s)	52, 57
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	4 cut(s)	158, 188, 206, 212
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	74
Hpy188I	TCNGA	3 cut(s)	73, 151, 239
Hpy188III	TCNNGA	2 cut(s)	176, 185
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
Hsp92II	CATG	4 cut(s)	158, 188, 206, 212
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	2 cut(s)	60, 151
LpnPI	CCDG	4 cut(s)	2, 21, 29, 89
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	3 cut(s)	92, 122, 125
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	57
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	1 cut(s)	188
MluNI	TGGCCA	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	129
Mox20I	TGGCCA	1 cut(s)	207
MroXI	GAANNNNTTC	1 cut(s)	217
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	207
Msp20I	TGGCCA	1 cut(s)	207
MspR9I	CCNGG	2 cut(s)	9, 17
MvaI	CCWGG	2 cut(s)	9, 17
MwoI	GCNNNNNNNGC	1 cut(s)	52
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	158, 188, 206, 212
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	256
NsbI	TGCGCA	1 cut(s)	128
PagI	TCATGA	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	2 cut(s)	7, 15
PspGI	CCWGG	2 cut(s)	7, 15
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	207
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	9, 17
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	4 cut(s)	18, 57, 174, 245
SfaNI	GCATC	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	207
Sse9I	AATT	1 cut(s)	188
SspMI	CTAG	1 cut(s)	267
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	7, 15
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	93
TasI	AATT	1 cut(s)	188
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	2 cut(s)	84, 265
TseFI	GTSAC	1 cut(s)	256
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	173, 201
TspRI	CASTG	2 cut(s)	84, 265
XapI	RAATTY	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	217
XspI	CTAG	1 cut(s)	267
ZrmI	AGTACT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.