Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002083

Physical Location & Seq

Genomic Coordinates Forward (+)

34647457 .. 34647633

Gene Structure 177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1325000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGTGTCCCCATGTGGCGAACAACGGCCTCGGCCAGCCGCATCCCAAATTAGGCTTCGCCGCCTCGTGGTTCGCCACCCATCAGCTCATTGCCAAGATGATCTTCCACGTACGAGTGGAGAATCACGCCTGCCGCACTCTTGATCCAACACGTGCCGCTATCTTCTACGTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

59

Amino Acids

6.48

Weight (kDa)

9.38

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	3 - 58	2.3e-07	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68470
fragaria_vesca	FvH4_1g20990 FvH4_1g21000 FvH4_1g21020
malus_domestica	MD01G1028500.v1.1 MD01G1028700.v1.1 MD15G1324800.v1.1 MD15G1324900.v1.1 MD15G1325000.v1.1 MD15G1325100.v1.1
prunus_persica	Prupe.6G185700_v2.0.a1 Prupe.6G185800_v2.0.a1 Prupe.6G186000_v2.0.a1
pyrus_communis	pycom01g05660 pycom01g05690 pycom15g28660 pycom15g28670
rosa_chinensis	RchiOBHm_Chr2g0114491 RchiOBHm_Chr2g0114511
rosa_laevigata	RLG00000018105 RLG00000018109 RLG00000018110
rosa_multiflora	Rmu_co8320661.1_g000001 Rmu_sc0000371.1_g000001 Rmu_sc0000371.1_g000005 Rmu_sc0015718.1_g000003 Rmu_sc0015718.1_g000009
rosa_roxburghii	Rroxscaffold_2G00130190 Rroxscaffold_2G00130220 Rroxscaffold_2G00130250
rosa_rugosa	Rorug02G0190500 Rorug02G0190500
rosa_samantha	Rh2AG248000 Rh2AG248200 Rh2AG248400 Rh2BG257800 Rh2BG258000 Rh2CG251400 Rh2CG251500 Rh2CG251700 Rh2DG256200 Rh2DG256400
rosa_wichuraiana	Rw2G019290 Rw2G019310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	38, 60, 133, 156
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	31
AcvI	CACGTG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	50, 66
AflIII	ACRYGT	1 cut(s)	149
AjuI	GAANNNNNNNTTGG	4 cut(s)	38, 70, 86, 118
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	2 cut(s)	25, 31
BauI	CACGAG	1 cut(s)	64
BbrPI	CACGTG	1 cut(s)	152
BccI	CCATC	1 cut(s)	87
BceAI	ACGGC	1 cut(s)	40
BisI	GCNGC	4 cut(s)	38, 60, 133, 156
BlsI	GCNGC	4 cut(s)	39, 61, 134, 157
BmsI	GCATC	1 cut(s)	49
BsaAI	YACGTR	2 cut(s)	109, 152
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 66
Bse3DI	GCAATG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	2 cut(s)	50, 66
BseMI	GCAATG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	27, 33
BsiWI	CGTACG	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	50, 66
BsnI	GGCC	2 cut(s)	27, 33
Bsp143I	GATC	2 cut(s)	99, 142
BspACI	CCGC	4 cut(s)	38, 60, 133, 156
BspANI	GGCC	2 cut(s)	27, 33
BspPI	GGATC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	2 cut(s)	99, 142
BssSI	CACGAG	1 cut(s)	64
Bst2BI	CACGAG	1 cut(s)	64
BstBAI	YACGTR	2 cut(s)	109, 152
BstC8I	GCNNGC	2 cut(s)	35, 130
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	2 cut(s)	102, 145
BstMBI	GATC	2 cut(s)	99, 142
BsuRI	GGCC	2 cut(s)	27, 33
BtsCI	GGATG	1 cut(s)	40
Cac8I	GCNNGC	2 cut(s)	35, 130
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	5 cut(s)	27, 33, 37, 54, 85
CviKI_1	RGCY	5 cut(s)	27, 33, 37, 54, 85
CviQI	GTAC	1 cut(s)	110
DpnI	GATC	2 cut(s)	101, 144
DpnII	GATC	2 cut(s)	99, 142
EaeI	YGGCCR	1 cut(s)	31
Eco72I	CACGTG	1 cut(s)	152
FaeI	CATG	1 cut(s)	14
FaiI	YATR	1 cut(s)	12
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FatI	CATG	1 cut(s)	10
Fnu4HI	GCNGC	4 cut(s)	38, 60, 133, 156
FokI	GGATG	1 cut(s)	27
Fsp4HI	GCNGC	4 cut(s)	38, 60, 133, 156
GluI	GCNGC	4 cut(s)	38, 60, 133, 156
HaeIII	GGCC	2 cut(s)	27, 33
Hin1II	CATG	1 cut(s)	14
HinfI	GANTC	1 cut(s)	121
Hpy188III	TCNNGA	1 cut(s)	140
HpyCH4IV	ACGT	3 cut(s)	108, 151, 168
HpySE526I	ACGT	3 cut(s)	108, 151, 168
Hsp92II	CATG	1 cut(s)	14
Kzo9I	GATC	2 cut(s)	99, 142
LpnPI	CCDG	2 cut(s)	47, 142
LweI	GCATC	1 cut(s)	49
MaeII	ACGT	3 cut(s)	108, 151, 168
MalI	GATC	2 cut(s)	101, 144
MboI	GATC	2 cut(s)	99, 142
MboII	GAAGA	2 cut(s)	94, 154
MluCI	AATT	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	2 cut(s)	38, 73
MseI	TTAA	1 cut(s)	175
NdeII	GATC	2 cut(s)	99, 142
NlaIII	CATG	1 cut(s)	14
NmeAIII	GCCGAG	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	121
Pfl23II	CGTACG	1 cut(s)	109
PkrI	GCNGC	4 cut(s)	39, 61, 134, 157
PmaCI	CACGTG	1 cut(s)	152
PmlI	CACGTG	1 cut(s)	152
Ppu21I	YACGTR	2 cut(s)	109, 152
PspCI	CACGTG	1 cut(s)	152
PspLI	CGTACG	1 cut(s)	109
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	175
SatI	GCNGC	4 cut(s)	38, 60, 133, 156
Sau3AI	GATC	2 cut(s)	99, 142
SetI	ASST	4 cut(s)	87, 111, 154, 171
SfaNI	GCATC	1 cut(s)	49
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	4 cut(s)	38, 60, 133, 156
TaiI	ACGT	3 cut(s)	111, 154, 171
TasI	AATT	1 cut(s)	47
TauI	GCSGC	4 cut(s)	40, 62, 135, 158
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	175
Tru9I	TTAA	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.