Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002083

Physical Location & Seq

Genomic Coordinates Forward (+)

27893935 .. 27894495

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG248000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGCAAAACAAGATGCGAGCGCGTACTCTATGTTCTTAGACCAGAAGAGTAATGCGAGTAAGAGAATTGAAGAAGAGTTGTTGAAGATTTCGAGCGACAGGGTTGAGAGGATGCGTGAAAAGCTTATAGACTTGATTCCGAGCTTGACTTACGCCCACCCTAATGCGTCAAGTATAGGGTTTGAGGATGTTGCACTTGCATCATTGACCAATAAGCATGTCAACAAAATTATAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

79

Amino Acids

8.89

Weight (kDa)

6.72

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68470
fragaria_vesca	FvH4_1g20990 FvH4_1g21000 FvH4_1g21020
malus_domestica	MD01G1028500.v1.1 MD01G1028700.v1.1 MD15G1324800.v1.1 MD15G1324900.v1.1 MD15G1325000.v1.1 MD15G1325100.v1.1
prunus_persica	Prupe.6G185700_v2.0.a1 Prupe.6G185800_v2.0.a1 Prupe.6G186000_v2.0.a1
pyrus_communis	pycom01g05660 pycom01g05690 pycom15g28660 pycom15g28670
rosa_chinensis	RchiOBHm_Chr2g0114491 RchiOBHm_Chr2g0114511
rosa_laevigata	RLG00000018105 RLG00000018109 RLG00000018110
rosa_multiflora	Rmu_co8320661.1_g000001 Rmu_sc0000371.1_g000001 Rmu_sc0000371.1_g000005 Rmu_sc0015718.1_g000003 Rmu_sc0015718.1_g000009
rosa_roxburghii	Rroxscaffold_2G00130190 Rroxscaffold_2G00130220 Rroxscaffold_2G00130250
rosa_rugosa	Rorug02G0190500 Rorug02G0190500
rosa_samantha	Rh2AG248000 Rh2AG248200 Rh2AG248400 Rh2BG257800 Rh2BG258000 Rh2CG251400 Rh2CG251500 Rh2CG251700 Rh2DG256200 Rh2DG256400
rosa_wichuraiana	Rw2G019290 Rw2G019310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	233
AccII	CGCG	1 cut(s)	23
AfaI	GTAC	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	71, 85
AluBI	AGCT	2 cut(s)	124, 144
AluI	AGCT	2 cut(s)	124, 144
AspLEI	GCGC	1 cut(s)	23
BmsI	GCATC	3 cut(s)	4, 102, 209
BseGI	GGATG	2 cut(s)	117, 193
Bsh1236I	CGCG	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	23
Bst6I	CTCTTC	2 cut(s)	41, 69
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	117, 193
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	221
BstUI	CGCG	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	117, 193
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	1 cut(s)	23
CseI	GACGC	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	2 cut(s)	124, 144
CviKI_1	RGCY	2 cut(s)	124, 144
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	41, 69
EarI	CTCTTC	2 cut(s)	41, 69
FaeI	CATG	1 cut(s)	221
FaiI	YATR	5 cut(s)	32, 128, 176, 219, 233
FatI	CATG	1 cut(s)	217
FokI	GGATG	2 cut(s)	124, 200
GlaI	GCGC	1 cut(s)	22
HgaI	GACGC	1 cut(s)	156
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	221
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	141
Hpy8I	GTNNAC	1 cut(s)	223
HpyCH4V	TGCA	2 cut(s)	194, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	221
HspAI	GCGC	1 cut(s)	21
LpnPI	CCDG	2 cut(s)	56, 85
LweI	GCATC	3 cut(s)	4, 102, 209
MboII	GAAGA	4 cut(s)	58, 83, 86, 97
MluCI	AATT	3 cut(s)	66, 228, 235
MnlI	CCTC	2 cut(s)	102, 178
MseI	TTAA	1 cut(s)	238
MslI	CAYNNNNRTG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	221
NspI	RCATGY	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	136
PsiI	TTATAA	1 cut(s)	233
PsrI	GAACNNNNNNTAC	2 cut(s)	17, 49
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	238
SetI	ASST	2 cut(s)	126, 146
SfaNI	GCATC	3 cut(s)	4, 102, 209
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse9I	AATT	3 cut(s)	66, 228, 235
TaqI	TCGA	1 cut(s)	92
TasI	AATT	3 cut(s)	66, 228, 235
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	238
Tru9I	TTAA	1 cut(s)	238
XceI	RCATGY	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.