Rmu_co8320661.1_g000001

Xyloglucan galactosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8320661.1
Physical Location & Seq
Reverse (-)
1 .. 946
946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8320661.1_g000001.1.cds

Sequence Viewer

Length: 917 bp
ctatcagctgcttgcctcatcttttggttcccttcatcccctgatactcttatcctccaacaacatgaccaccacattcaacatcatgatcctcctcatgttaatcaaactcgaaaccagaacaacaacaacaacaaaaacgccgacggtctcattactcccaccaaaccatccgtcacagttccgacttgcaaccaaaaactgtctgtctacctatacacattgccagcgaagttcaacctcggactccttcacaactgccacaacctgaactttcataccgacatgtgcccccacgtagcgaactccggactcggccagccacttccgaccatgggccccacattagcaaccaacaacagcagcagctggttcgccaccaaccagttctcggcggagttgatcttccacgcgcgtctcctgaaccacccctgccgcacgtacgaccccacacgtgccactctcttctacgtaccctactacggcggccttcacgtttcgagcaagttccgggaaaggaatctaaccgcacgtgacgagctcgacgtcagcttggttgactatctacaatcccaatccacgtggcagaagcacaatgggaaggaccattttatcgccctgggacgcatcgtacgtgattttacgtcttcgtggctaggagccggccgtctccttaaactcgccggagtcgaaaacatgtcggttctgatcatcgagagaaacccttttaaaggctcgaaccaacacggcataccctatccttcctatttccacccgtccacgtggcaagagatgtccacgtggcagaatcagatgagagaaactcaccggcgccacttgttctctttcatcggcgcgaagagaaggaaggcggcgatccggaatgagttcataaagcaatgcggcgagtcaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

305

Amino Acids

34.81

Weight (kDa)

9.35

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 549
AccB1I GGYRCC 1 cut(s) 831
AccI GTMKAC 1 cut(s) 210
AccII CGCG 3 cut(s) 413, 415, 857
AccIII TCCGGA 2 cut(s) 308, 879
AciI CCGC 6 cut(s) 395, 436, 486, 528, 872, 903
AclWI GGATC 2 cut(s) 83, 871
AcoI YGGCCR 2 cut(s) 316, 664
AcvI CACGTG 5 cut(s) 455, 533, 582, 783, 801
AcyI GRCGYC 2 cut(s) 546, 832
AfaI GTAC 3 cut(s) 443, 474, 633
AfiI CCNNNNNNNGG 4 cut(s) 335, 391, 482, 731
AflIII ACRYGT 3 cut(s) 285, 452, 696
AgsI TTSAA 2 cut(s) 80, 238
AjnI CCWGG 1 cut(s) 618
AluBI AGCT 4 cut(s) 8, 369, 541, 552
AluI AGCT 4 cut(s) 8, 369, 541, 552
Alw21I GWGCWC 1 cut(s) 543
Alw26I GTCTC 3 cut(s) 155, 422, 674
AlwI GGATC 2 cut(s) 83, 871
AlwNI CAGNNNCTG 1 cut(s) 369
Aor13HI TCCGGA 2 cut(s) 308, 879
AoxI GGCC 4 cut(s) 316, 337, 487, 664
ApaI GGGCCC 1 cut(s) 341
ApeKI GCWGC 3 cut(s) 8, 363, 366
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
Asp700I GAANNNNTTC 1 cut(s) 887
AspLEI GCGC 3 cut(s) 415, 834, 857
AspS9I GGNCC 3 cut(s) 337, 338, 604
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 1 cut(s) 818
AvaII GGWCC 1 cut(s) 604
BaeGI GKGCMC 2 cut(s) 293, 341
BanI GGYRCC 1 cut(s) 831
BanII GRGCYC 2 cut(s) 341, 543
BbrPI CACGTG 5 cut(s) 455, 533, 582, 783, 801
BbsI GAAGAC 1 cut(s) 639
Bbv12I GWGCWC 1 cut(s) 543
BbvI GCAGC 2 cut(s) 375, 378
BccI CCATC 1 cut(s) 178
BceAI ACGGC 3 cut(s) 499, 651, 763
BcgI CGANNNNNNTGC 2 cut(s) 355, 389
BciT130I CCWGG 1 cut(s) 620
BclI TGATCA 1 cut(s) 708
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 3 cut(s) 155, 422, 674
BfaI CTAG 2 cut(s) 656, 915
BfoI RGCGCY 1 cut(s) 835
BisI GCNGC 7 cut(s) 9, 364, 367, 436, 487, 873, 904
BlsI GCNGC 7 cut(s) 10, 365, 368, 437, 488, 874, 905
Bme1390I CCNGG 2 cut(s) 512, 620
Bme18I GGWCC 1 cut(s) 604
BmgT120I GGNCC 3 cut(s) 337, 338, 604
BmiI GGNNCC 5 cut(s) 29, 339, 340, 661, 833
BmrFI CCNGG 2 cut(s) 512, 620
BmsI GCATC 1 cut(s) 636
BpiI GAAGAC 1 cut(s) 639
BplI GAGNNNNNCTC 2 cut(s) 808, 840
BpuMI CCSGG 1 cut(s) 512
BsaAI YACGTR 9 cut(s) 298, 441, 455, 472, 533, 582, 635, 783, 801
BsaHI GRCGYC 2 cut(s) 546, 832
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 4 cut(s) 241, 333, 618, 619
BsaWI WCCGGW 2 cut(s) 308, 879
Bsc4I CCNNNNNNNGG 4 cut(s) 335, 391, 482, 731
Bse118I RCCGGY 2 cut(s) 662, 828
Bse1I ACTGG 1 cut(s) 385
Bse3DI GCAATG 2 cut(s) 221, 905
BseAI TCCGGA 2 cut(s) 308, 879
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 4 cut(s) 241, 333, 618, 619
BseGI GGATG 2 cut(s) 35, 170
BseLI CCNNNNNNNGG 4 cut(s) 335, 391, 482, 731
BseMI GCAATG 2 cut(s) 221, 905
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 1 cut(s) 84
BseSI GKGCMC 2 cut(s) 293, 341
BseX3I CGGCCG 1 cut(s) 664
BseXI GCAGC 2 cut(s) 375, 378
Bsh1236I CGCG 3 cut(s) 413, 415, 857
Bsh1285I CGRYCG 1 cut(s) 667
BshFI GGCC 4 cut(s) 318, 339, 489, 666
BshNI GGYRCC 1 cut(s) 831
BsiEI CGRYCG 1 cut(s) 667
BsiHKAI GWGCWC 1 cut(s) 543
BsiSI CCGG 6 cut(s) 309, 511, 663, 684, 829, 880
BsiWI CGTACG 2 cut(s) 441, 631
BslFI GGGAC 1 cut(s) 636
BslI CCNNNNNNNGG 4 cut(s) 335, 391, 482, 731
BsmAI GTCTC 3 cut(s) 155, 422, 674
BsmBI CGTCTC 2 cut(s) 422, 674
BsmFI GGGAC 1 cut(s) 636
BsnI GGCC 4 cut(s) 318, 339, 489, 666
Bso31I GGTCTC 1 cut(s) 155
Bsp120I GGGCCC 1 cut(s) 337
Bsp1286I GDGCHC 3 cut(s) 293, 341, 543
Bsp13I TCCGGA 2 cut(s) 308, 879
Bsp143I GATC 4 cut(s) 88, 402, 708, 876
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 6 cut(s) 395, 436, 486, 528, 872, 903
BspANI GGCC 4 cut(s) 318, 339, 489, 666
BspEI TCCGGA 2 cut(s) 308, 879
BspFNI CGCG 3 cut(s) 413, 415, 857
BspHI TCATGA 1 cut(s) 85
BspLI GGNNCC 5 cut(s) 29, 339, 340, 661, 833
BspPI GGATC 2 cut(s) 83, 871
BspT107I GGYRCC 1 cut(s) 831
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 221, 905
BsrFI RCCGGY 2 cut(s) 662, 828
BsrI ACTGG 1 cut(s) 385
BssAI RCCGGY 2 cut(s) 662, 828
BssECI CCNNGG 4 cut(s) 241, 333, 618, 619
BssMI GATC 4 cut(s) 88, 402, 708, 876
BssNI GRCGYC 2 cut(s) 546, 832
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 3 cut(s) 149, 181, 204
Bst6I CTCTTC 2 cut(s) 470, 854
BstACI GRCGYC 2 cut(s) 546, 832
BstBAI YACGTR 9 cut(s) 298, 441, 455, 472, 533, 582, 635, 783, 801
BstC8I GCNNGC 4 cut(s) 13, 228, 320, 664
BstDSI CCRYGG 1 cut(s) 333
BstENI CCTNNNNNAGG 1 cut(s) 729
BstF5I GGATG 2 cut(s) 35, 170
BstFNI CGCG 3 cut(s) 413, 415, 857
BstH2I RGCGCY 1 cut(s) 835
BstHHI GCGC 3 cut(s) 415, 834, 857
BstKTI GATC 4 cut(s) 91, 405, 711, 879
BstMAI GTCTC 3 cut(s) 155, 422, 674
BstMBI GATC 4 cut(s) 88, 402, 708, 876
BstMCI CGRYCG 1 cut(s) 667
BstNI CCWGG 1 cut(s) 620
BstNSI RCATGY 2 cut(s) 289, 700
BstSCI CCNGG 2 cut(s) 510, 618
BstSLI GKGCMC 2 cut(s) 293, 341
BstSNI TACGTA 1 cut(s) 472
BstUI CGCG 3 cut(s) 413, 415, 857
BstV1I GCAGC 2 cut(s) 375, 378
BstV2I GAAGAC 1 cut(s) 639
BstZI CGGCCG 1 cut(s) 664
BsuRI GGCC 4 cut(s) 318, 339, 489, 666
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 2 cut(s) 35, 170
Cac8I GCNNGC 4 cut(s) 13, 228, 320, 664
CaiI CAGNNNCTG 1 cut(s) 369
CciI TCATGA 1 cut(s) 85
CfoI GCGC 3 cut(s) 415, 834, 857
Cfr10I RCCGGY 2 cut(s) 662, 828
Cfr13I GGNCC 3 cut(s) 337, 338, 604
CseI GACGC 2 cut(s) 404, 633
Csp6I GTAC 3 cut(s) 442, 473, 632
CspCI CAANNNNNGTGG 2 cut(s) 563, 598
CviAII CATG 6 cut(s) 65, 86, 98, 286, 334, 697
CviQI GTAC 3 cut(s) 442, 473, 632
DinI GGCGCC 1 cut(s) 833
DpnI GATC 4 cut(s) 90, 404, 710, 878
DpnII GATC 4 cut(s) 88, 402, 708, 876
DraI TTTAAA 1 cut(s) 730
EaeI YGGCCR 2 cut(s) 316, 664
EagI CGGCCG 1 cut(s) 664
Eam1104I CTCTTC 2 cut(s) 470, 854
EarI CTCTTC 2 cut(s) 470, 854
EciI GGCGGA 1 cut(s) 410
Ecl136II GAGCTC 1 cut(s) 541
EclXI CGGCCG 1 cut(s) 664
Eco105I TACGTA 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 333
Eco24I GRGCYC 2 cut(s) 341, 543
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 604
Eco52I CGGCCG 1 cut(s) 664
Eco53kI GAGCTC 1 cut(s) 541
Eco72I CACGTG 5 cut(s) 455, 533, 582, 783, 801
EcoICRI GAGCTC 1 cut(s) 541
EcoNI CCTNNNNNAGG 1 cut(s) 729
EcoO109I RGGNCCY 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 618
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 2 cut(s) 341, 543
EgeI GGCGCC 1 cut(s) 833
EheI GGCGCC 1 cut(s) 833
ErhI CCWWGG 1 cut(s) 333
Esp3I CGTCTC 2 cut(s) 422, 674
FaeI CATG 6 cut(s) 68, 89, 101, 289, 337, 700
FaqI GGGAC 1 cut(s) 636
FatI CATG 6 cut(s) 64, 85, 97, 285, 333, 696
FbaI TGATCA 1 cut(s) 708
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 7 cut(s) 9, 364, 367, 436, 487, 873, 904
FokI GGATG 2 cut(s) 22, 157
FriOI GRGCYC 2 cut(s) 341, 543
Fsp4HI GCNGC 7 cut(s) 9, 364, 367, 436, 487, 873, 904
FspBI CTAG 2 cut(s) 656, 915
GlaI GCGC 3 cut(s) 414, 833, 856
GluI GCNGC 7 cut(s) 9, 364, 367, 436, 487, 873, 904
HaeII RGCGCY 1 cut(s) 835
HaeIII GGCC 4 cut(s) 318, 339, 489, 666
HapII CCGG 6 cut(s) 309, 511, 663, 684, 829, 880
HgaI GACGC 2 cut(s) 404, 633
HhaI GCGC 3 cut(s) 415, 834, 857
Hin1I GRCGYC 2 cut(s) 546, 832
Hin1II CATG 6 cut(s) 68, 89, 101, 289, 337, 700
Hin6I GCGC 3 cut(s) 413, 832, 855
HinP1I GCGC 3 cut(s) 413, 832, 855
HincII GTYRAC 2 cut(s) 559, 912
HindII GTYRAC 2 cut(s) 559, 912
HinfI GANTC 6 cut(s) 246, 312, 520, 687, 808, 908
HpaII CCGG 6 cut(s) 309, 511, 663, 684, 829, 880
HphI GGTGA 1 cut(s) 818
Hpy166II GTNNAC 5 cut(s) 211, 559, 780, 798, 912
Hpy188I TCNGA 5 cut(s) 186, 245, 330, 708, 813
Hpy188III TCNNGA 5 cut(s) 86, 309, 421, 715, 880
Hpy8I GTNNAC 5 cut(s) 211, 559, 780, 798, 912
Hpy99I CGWCG 2 cut(s) 149, 548
HpyAV CCTTC 7 cut(s) 42, 260, 500, 595, 771, 858, 862
HpyCH4III ACNGT 3 cut(s) 149, 181, 204
HpyCH4V TGCA 1 cut(s) 192
Hsp92I GRCGYC 2 cut(s) 546, 832
Hsp92II CATG 6 cut(s) 68, 89, 101, 289, 337, 700
HspAI GCGC 3 cut(s) 413, 832, 855
KasI GGCGCC 1 cut(s) 831
Kpn2I TCCGGA 2 cut(s) 308, 879
KroI GCCGGC 1 cut(s) 662
KroNI GCCGGC 1 cut(s) 664
Ksp22I TGATCA 1 cut(s) 708
Kzo9I GATC 4 cut(s) 88, 402, 708, 876
LmnI GCTCC 1 cut(s) 659
Lsp1109I GCAGC 2 cut(s) 375, 378
LweI GCATC 1 cut(s) 636
MaeI CTAG 2 cut(s) 656, 915
MaeIII GTNAC 2 cut(s) 175, 533
MalI GATC 4 cut(s) 90, 404, 710, 878
MboI GATC 4 cut(s) 88, 402, 708, 876
MboII GAAGA 4 cut(s) 397, 457, 639, 871
MhlI GDGCHC 3 cut(s) 293, 341, 543
Mly113I GGCGCC 1 cut(s) 832
MlyI GAGTC 4 cut(s) 240, 306, 696, 917
MmeI TCCRAC 3 cut(s) 82, 209, 353
MnlI CCTC 5 cut(s) 26, 65, 102, 105, 251
MroI TCCGGA 2 cut(s) 308, 879
MroNI GCCGGC 1 cut(s) 662
MroXI GAANNNNTTC 1 cut(s) 887
MseI TTAA 3 cut(s) 102, 675, 729
MspA1I CMGCKG 2 cut(s) 8, 369
MspI CCGG 6 cut(s) 309, 511, 663, 684, 829, 880
MspR9I CCNGG 2 cut(s) 512, 620
MvaI CCWGG 1 cut(s) 620
MvnI CGCG 3 cut(s) 413, 415, 857
NaeI GCCGGC 1 cut(s) 664
NarI GGCGCC 1 cut(s) 832
NciI CCSGG 1 cut(s) 512
NcoI CCATGG 1 cut(s) 333
NdeII GATC 4 cut(s) 88, 402, 708, 876
NgoMIV GCCGGC 1 cut(s) 662
NlaIII CATG 6 cut(s) 68, 89, 101, 289, 337, 700
NlaIV GGNNCC 5 cut(s) 29, 339, 340, 661, 833
NmeAIII GCCGAG 2 cut(s) 294, 371
NmuCI GTSAC 2 cut(s) 175, 533
NspI RCATGY 2 cut(s) 289, 700
PagI TCATGA 1 cut(s) 85
PasI CCCWGGG 1 cut(s) 619
PciI ACATGT 2 cut(s) 285, 696
PcsI WCGNNNNNNNCGW 3 cut(s) 543, 631, 687
PdiI GCCGGC 1 cut(s) 664
PdmI GAANNNNTTC 1 cut(s) 887
PfeI GAWTC 2 cut(s) 520, 808
Pfl23II CGTACG 2 cut(s) 441, 631
PfoI TCCNGGA 1 cut(s) 510
PkrI GCNGC 7 cut(s) 10, 365, 368, 437, 488, 874, 905
PleI GAGTC 4 cut(s) 240, 306, 695, 916
PluTI GGCGCC 1 cut(s) 835
PmaCI CACGTG 5 cut(s) 455, 533, 582, 783, 801
PmlI CACGTG 5 cut(s) 455, 533, 582, 783, 801
PpsI GAGTC 4 cut(s) 240, 306, 695, 916
Ppu21I YACGTR 9 cut(s) 298, 441, 455, 472, 533, 582, 635, 783, 801
PscI ACATGT 2 cut(s) 285, 696
Psp124BI GAGCTC 1 cut(s) 543
Psp6I CCWGG 1 cut(s) 618
PspCI CACGTG 5 cut(s) 455, 533, 582, 783, 801
PspGI CCWGG 1 cut(s) 618
PspLI CGTACG 2 cut(s) 441, 631
PspN4I GGNNCC 5 cut(s) 29, 339, 340, 661, 833
PspOMI GGGCCC 1 cut(s) 337
PspPI GGNCC 3 cut(s) 337, 338, 604
PstNI CAGNNNCTG 1 cut(s) 369
PvuII CAGCTG 2 cut(s) 8, 369
RsaI GTAC 3 cut(s) 443, 474, 633
RsaNI GTAC 3 cut(s) 442, 473, 632
SacI GAGCTC 1 cut(s) 543
SaqAI TTAA 3 cut(s) 102, 675, 729
SatI GCNGC 7 cut(s) 9, 364, 367, 436, 487, 873, 904
Sau3AI GATC 4 cut(s) 88, 402, 708, 876
Sau96I GGNCC 3 cut(s) 337, 338, 604
SchI GAGTC 4 cut(s) 240, 306, 696, 917
ScrFI CCNGG 2 cut(s) 512, 620
SduI GDGCHC 3 cut(s) 293, 341, 543
SfaNI GCATC 1 cut(s) 636
SfoI GGCGCC 1 cut(s) 833
SgrAI CRCCGGYG 1 cut(s) 828
SinI GGWCC 1 cut(s) 604
SnaBI TACGTA 1 cut(s) 472
SsiI CCGC 6 cut(s) 395, 436, 486, 528, 872, 903
SspDI GGCGCC 1 cut(s) 831
SspMI CTAG 2 cut(s) 656, 915
SstI GAGCTC 1 cut(s) 543
StyD4I CCNGG 2 cut(s) 510, 618
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 3 cut(s) 149, 181, 204
TaqI TCGA 6 cut(s) 112, 500, 543, 690, 714, 737
TauI GCSGC 4 cut(s) 438, 489, 875, 906
TfiI GAWTC 2 cut(s) 520, 808
Tru1I TTAA 3 cut(s) 102, 675, 729
Tru9I TTAA 3 cut(s) 102, 675, 729
TseFI GTSAC 2 cut(s) 175, 533
TseI GCWGC 3 cut(s) 8, 363, 366
Tsp45I GTSAC 2 cut(s) 175, 533
TspDTI ATGAA 4 cut(s) 24, 266, 838, 880
TspGWI ACGGA 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 604
XagI CCTNNNNNAGG 1 cut(s) 729
XceI RCATGY 2 cut(s) 289, 700
XmiI GTMKAC 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 887
XspI CTAG 2 cut(s) 656, 915
ZraI GACGTC 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.