FvH4_1g20990

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002083
Physical Location & Seq
Forward (+)
13072704 .. 13073935
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20990.t1

Sequence Viewer

Length: 882 bp
ATGAGTTATACAATCATAAACAACATTAACATTCCCCAACACCTGACAACAGATACCGGTAGTACAACAGATGAAGAACCATTCCTGCTTTCCACCTGCGTCGATCCAAGCCTTTCAGTGTACGTATACACTTTGCCGCCACGGTTCAACGTCGACTTCCTCGACCGCTGCCGCACCATTGCCGCCACCTACACCTTGTGTCCCTCCGTCGCCAACTCGGGACTCGGCCAGCCACTCTTTGACGACACACCGGGGAAGGTTACTAGCTGGTTCAACACCATGCAGTTCGCCTCGGAGCTCATCTTCCATGCACGCCTGCTCAACCATCCTTGCCGAACGTGGGATCCCACACGTGCCAGTCTATTTTACGTCCCCTTCTACGGCGGCCTCTACTATCTAAACCAATTCAAAGAGTCCAACTCCACCGCACGCAACCAGCTTGCGGTGGACTTGGCCAATTACATTCAGGCACAGCCCATGTGGAAGAGGACCATTGGTAAAGACCACTTTATGAGAAATCTCAGTCCAGCGAGAACCAACAACGTCGGAAGAAATGGTAACATGGCAAGACAAGGTGAGGGAAATGGAGAGGCCTCTCACTTGTTTTCCTTTGTAGACAAGTCTGCTTACAACCAGTACGCATGGTTTTTACCTGAAGATGCGAGCGCGTACTCTGTGCTCATAGACGAGAAGAGCAATGCGAGTAAGAAAATTGAAGAAGAATTGCTGAAGATTTCGAGCGACAGGGTTCAGAGGATGCGTGAAAAGCTTATAGATTTGATTCGGAGCTTGACATATGCCCATCCAATTGCATCAAATTTAGGGTTTGAGGATGTTGCAGTTGCGTCATTGGCCAAGCACGTCAAAAATACTATAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

294

Amino Acids

33.09

Weight (kDa)

6.66

Isoelectric Point (pI)

26.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 37 - 182 1.7e-26 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 104
Acc36I ACCTGC 1 cut(s) 104
AccI GTMKAC 3 cut(s) 126, 153, 615
AccII CGCG 1 cut(s) 668
AciI CCGC 7 cut(s) 137, 166, 172, 183, 384, 426, 443
AclWI GGATC 3 cut(s) 98, 338, 351
AcoI YGGCCR 3 cut(s) 226, 453, 852
AcsI RAATTY 1 cut(s) 817
AcuI CTGAAG 2 cut(s) 675, 749
AcvI CACGTG 1 cut(s) 353
AdeI CACNNNGTG 1 cut(s) 198
AfaI GTAC 4 cut(s) 64, 122, 638, 671
AfiI CCNNNNNNNGG 3 cut(s) 340, 380, 442
AflIII ACRYGT 1 cut(s) 350
AgeI ACCGGT 1 cut(s) 56
AgsI TTSAA 4 cut(s) 148, 274, 409, 716
AjiI CACGTC 1 cut(s) 862
AloI GAACNNNNNNTCC 2 cut(s) 328, 360
AluBI AGCT 5 cut(s) 267, 298, 439, 769, 789
AluI AGCT 5 cut(s) 267, 298, 439, 769, 789
Alw21I GWGCWC 2 cut(s) 300, 681
AlwI GGATC 3 cut(s) 98, 338, 351
Ama87I CYCGRG 1 cut(s) 217
AoxI GGCC 5 cut(s) 226, 385, 453, 591, 852
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 817
AsiGI ACCGGT 1 cut(s) 56
AspLEI GCGC 1 cut(s) 668
AspS9I GGNCC 1 cut(s) 489
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 1 cut(s) 587
AvaI CYCGRG 1 cut(s) 217
AvaII GGWCC 1 cut(s) 489
BalI TGGCCA 2 cut(s) 455, 854
BamHI GGATCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 300
BbrPI CACGTG 1 cut(s) 353
Bbv12I GWGCWC 2 cut(s) 300, 681
BbvI GCAGC 1 cut(s) 155
BccI CCATC 2 cut(s) 333, 810
BceAI ACGGC 1 cut(s) 397
BcnI CCSGG 1 cut(s) 252
BfaI CTAG 1 cut(s) 264
BfuAI ACCTGC 1 cut(s) 104
BisI GCNGC 5 cut(s) 137, 169, 172, 183, 385
BlsI GCNGC 5 cut(s) 138, 170, 173, 184, 386
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 489
BmeT110I CYCGRG 1 cut(s) 217
BmgBI CACGTC 1 cut(s) 862
BmgT120I GGNCC 1 cut(s) 489
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 3 cut(s) 649, 747, 821
BplI GAGNNNNNCTC 2 cut(s) 404, 436
BpuMI CCSGG 1 cut(s) 252
BsaAI YACGTR 2 cut(s) 124, 353
BsaJI CCNNGG 3 cut(s) 140, 251, 291
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 3 cut(s) 340, 380, 442
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 357, 634
Bse3DI GCAATG 2 cut(s) 177, 703
BseDI CCNNGG 3 cut(s) 140, 251, 291
BseGI GGATG 4 cut(s) 325, 762, 802, 838
BseLI CCNNNNNNNGG 3 cut(s) 340, 380, 442
BseMI GCAATG 2 cut(s) 177, 703
BseMII CTCAG 1 cut(s) 535
BseNI ACTGG 2 cut(s) 357, 634
BseXI GCAGC 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 668
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 5 cut(s) 228, 387, 455, 593, 854
BshTI ACCGGT 1 cut(s) 56
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 2 cut(s) 300, 681
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 2 cut(s) 57, 251
BslFI GGGAC 3 cut(s) 186, 234, 356
BslI CCNNNNNNNGG 3 cut(s) 340, 380, 442
BsmFI GGGAC 3 cut(s) 186, 234, 356
BsnI GGCC 5 cut(s) 228, 387, 455, 593, 854
BsoBI CYCGRG 1 cut(s) 217
Bsp1286I GDGCHC 2 cut(s) 300, 681
Bsp143I GATC 2 cut(s) 103, 343
BspACI CCGC 7 cut(s) 137, 166, 172, 183, 384, 426, 443
BspANI GGCC 5 cut(s) 228, 387, 455, 593, 854
BspCNI CTCAG 1 cut(s) 534
BspFNI CGCG 1 cut(s) 668
BspLI GGNNCC 1 cut(s) 345
BspMI ACCTGC 1 cut(s) 104
BspPI GGATC 3 cut(s) 98, 338, 351
BspQI GCTCTTC 1 cut(s) 686
BsrDI GCAATG 2 cut(s) 177, 703
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 2 cut(s) 357, 634
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 3 cut(s) 140, 251, 291
BssMI GATC 2 cut(s) 103, 343
BssNAI GTATAC 1 cut(s) 127
Bst1107I GTATAC 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 144
Bst6I CTCTTC 2 cut(s) 479, 686
BstBAI YACGTR 2 cut(s) 124, 353
BstC8I GCNNGC 6 cut(s) 230, 313, 317, 430, 441, 664
BstDEI CTNAG 1 cut(s) 521
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 4 cut(s) 325, 762, 802, 838
BstFNI CGCG 1 cut(s) 668
BstHHI GCGC 1 cut(s) 668
BstKTI GATC 2 cut(s) 106, 346
BstMBI GATC 2 cut(s) 103, 343
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 2 cut(s) 766, 851
BstSCI CCNGG 1 cut(s) 250
BstSNI TACGTA 1 cut(s) 124
BstUI CGCG 1 cut(s) 668
BstV1I GCAGC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BstZ17I GTATAC 1 cut(s) 127
BsuRI GGCC 5 cut(s) 228, 387, 455, 593, 854
BtgI CCRYGG 1 cut(s) 140
BtrI CACGTC 1 cut(s) 862
BtsCI GGATG 4 cut(s) 325, 762, 802, 838
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 104
Cac8I GCNNGC 6 cut(s) 230, 313, 317, 430, 441, 664
CfoI GCGC 1 cut(s) 668
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 489
CseI GACGC 2 cut(s) 88, 834
Csp6I GTAC 4 cut(s) 63, 121, 637, 670
CspAI ACCGGT 1 cut(s) 56
CviAII CATG 5 cut(s) 280, 308, 478, 562, 642
CviQI GTAC 4 cut(s) 63, 121, 637, 670
DdeI CTNAG 1 cut(s) 521
DpnI GATC 2 cut(s) 105, 345
DpnII GATC 2 cut(s) 103, 343
DraIII CACNNNGTG 1 cut(s) 198
EaeI YGGCCR 3 cut(s) 226, 453, 852
Eam1104I CTCTTC 2 cut(s) 479, 686
EarI CTCTTC 2 cut(s) 479, 686
Ecl136II GAGCTC 1 cut(s) 298
Eco105I TACGTA 1 cut(s) 124
Eco147I AGGCCT 1 cut(s) 593
Eco24I GRGCYC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 489
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 2 cut(s) 675, 749
Eco72I CACGTG 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 217
EcoICRI GAGCTC 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 300
FaeI CATG 5 cut(s) 283, 311, 481, 565, 645
FaqI GGGAC 3 cut(s) 186, 234, 356
FatI CATG 5 cut(s) 279, 307, 477, 561, 641
FauNDI CATATG 1 cut(s) 796
FblI GTMKAC 3 cut(s) 126, 153, 615
Fnu4HI GCNGC 5 cut(s) 137, 169, 172, 183, 385
FokI GGATG 4 cut(s) 312, 769, 789, 845
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 5 cut(s) 137, 169, 172, 183, 385
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 667
GluI GCNGC 5 cut(s) 137, 169, 172, 183, 385
HaeIII GGCC 5 cut(s) 228, 387, 455, 593, 854
HapII CCGG 2 cut(s) 57, 251
HgaI GACGC 2 cut(s) 88, 834
HhaI GCGC 1 cut(s) 668
Hin1II CATG 5 cut(s) 283, 311, 481, 565, 645
Hin6I GCGC 1 cut(s) 666
HinP1I GCGC 1 cut(s) 666
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 767
HinfI GANTC 3 cut(s) 222, 413, 781
HpaII CCGG 2 cut(s) 57, 251
HphI GGTGA 1 cut(s) 587
Hpy166II GTNNAC 5 cut(s) 121, 127, 154, 448, 616
Hpy188I TCNGA 4 cut(s) 295, 548, 753, 786
Hpy188III TCNNGA 1 cut(s) 219
Hpy8I GTNNAC 5 cut(s) 121, 127, 154, 448, 616
Hpy99I CGWCG 4 cut(s) 104, 155, 212, 548
HpyAV CCTTC 2 cut(s) 250, 385
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4IV ACGT 7 cut(s) 123, 150, 338, 352, 369, 543, 861
HpyCH4V TGCA 4 cut(s) 283, 311, 812, 839
HpyF10VI GCNNNNNNNGC 2 cut(s) 766, 851
HpyF3I CTNAG 1 cut(s) 521
HpySE526I ACGT 7 cut(s) 123, 150, 338, 352, 369, 543, 861
Hsp92II CATG 5 cut(s) 283, 311, 481, 565, 645
HspAI GCGC 1 cut(s) 666
Kzo9I GATC 2 cut(s) 103, 343
LguI GCTCTTC 1 cut(s) 686
LmnI GCTCC 2 cut(s) 295, 786
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 3 cut(s) 649, 747, 821
MaeI CTAG 1 cut(s) 264
MaeII ACGT 7 cut(s) 123, 150, 338, 352, 369, 543, 861
MaeIII GTNAC 2 cut(s) 259, 557
MalI GATC 2 cut(s) 105, 345
MboI GATC 2 cut(s) 103, 343
MboII GAAGA 9 cut(s) 86, 295, 496, 561, 668, 703, 728, 731, 742
MfeI CAATTG 1 cut(s) 807
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 2 cut(s) 300, 681
MlsI TGGCCA 2 cut(s) 455, 854
MluCI AATT 7 cut(s) 404, 457, 711, 722, 807, 817, 877
MluNI TGGCCA 2 cut(s) 455, 854
MlyI GAGTC 2 cut(s) 216, 422
MmeI TCCRAC 2 cut(s) 441, 526
Mox20I TGGCCA 2 cut(s) 455, 854
MscI TGGCCA 2 cut(s) 455, 854
MseI TTAA 1 cut(s) 27
Msp20I TGGCCA 2 cut(s) 455, 854
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 2 cut(s) 57, 251
MspR9I CCNGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 807
MvnI CGCG 1 cut(s) 668
MwoI GCNNNNNNNGC 2 cut(s) 766, 851
NciI CCSGG 1 cut(s) 252
NdeI CATATG 1 cut(s) 796
NdeII GATC 2 cut(s) 103, 343
NlaIII CATG 5 cut(s) 283, 311, 481, 565, 645
NlaIV GGNNCC 1 cut(s) 345
NmeAIII GCCGAG 1 cut(s) 204
PaqCI CACCTGC 1 cut(s) 104
PceI AGGCCT 1 cut(s) 593
PciSI GCTCTTC 1 cut(s) 686
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 1 cut(s) 781
PinAI ACCGGT 1 cut(s) 56
PkrI GCNGC 5 cut(s) 138, 170, 173, 184, 386
PleI GAGTC 2 cut(s) 216, 421
PmaCI CACGTG 1 cut(s) 353
PmlI CACGTG 1 cut(s) 353
PpsI GAGTC 2 cut(s) 216, 421
Ppu21I YACGTR 2 cut(s) 124, 353
Psp124BI GAGCTC 1 cut(s) 300
PspCI CACGTG 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 345
PspPI GGNCC 1 cut(s) 489
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 4 cut(s) 64, 122, 638, 671
RsaNI GTAC 4 cut(s) 63, 121, 637, 670
SacI GAGCTC 1 cut(s) 300
SalI GTCGAC 1 cut(s) 152
SapI GCTCTTC 1 cut(s) 686
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 5 cut(s) 137, 169, 172, 183, 385
Sau3AI GATC 2 cut(s) 103, 343
Sau96I GGNCC 1 cut(s) 489
SchI GAGTC 2 cut(s) 216, 422
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 2 cut(s) 300, 681
SfaNI GCATC 3 cut(s) 649, 747, 821
SinI GGWCC 1 cut(s) 489
SnaBI TACGTA 1 cut(s) 124
Sse9I AATT 7 cut(s) 404, 457, 711, 722, 807, 817, 877
SseBI AGGCCT 1 cut(s) 593
SsiI CCGC 7 cut(s) 137, 166, 172, 183, 384, 426, 443
SspMI CTAG 1 cut(s) 264
SstI GAGCTC 1 cut(s) 300
StuI AGGCCT 1 cut(s) 593
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 144
TaiI ACGT 7 cut(s) 126, 153, 341, 355, 372, 546, 864
TaqI TCGA 4 cut(s) 102, 153, 162, 737
TasI AATT 7 cut(s) 404, 457, 711, 722, 807, 817, 877
TatI WGTACW 1 cut(s) 62
TauI GCSGC 4 cut(s) 139, 174, 185, 387
TfiI GAWTC 1 cut(s) 781
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 123
TseI GCWGC 1 cut(s) 168
TspDTI ATGAA 1 cut(s) 87
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 489
XapI RAATTY 1 cut(s) 817
XmiI GTMKAC 3 cut(s) 126, 153, 615
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.