Rh2CG251400

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002083
Physical Location & Seq
Forward (+)
26667547 .. 26667927
381 bp
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UTR
Exon/CDS
Intron
Rh2CG251400.1

Sequence Viewer

Length: 381 bp
ATGACTGATTCGGTGTTTTGCTTACAACCCCCCAGTGACACGCTGACGAGGCGGTCAACATTTGATTTAGTGCTGATGAGTTGCATACCTGTTTTCTTTTCACACAAGTCGGCTTATAATCAGTACCCATTGTTTTTACCTGAAGATGCGAGCGCGTACTCTATGTTCATAGACCAGAAGAGTAATGCGAGTAAGAGAATTGAAGACGAGTTGTTGAAGATTTCGAGCGACAGGGTTGAGAGGATGCGTGAGAAGCTTATAGACTTGATTCAGAGCTTGACTTACGCCCACCCTAATGCGTCAAGATTAGGGTTTGAGGATGTTGTGGATGTTGCACTTGCATCATTGGCCAATAAGCACGTCAACAAAATTATAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

126

Amino Acids

14.33

Weight (kDa)

5.87

Isoelectric Point (pI)

57.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 1 - 61 1.9e-12 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 117, 374
AasI GACNNNNNNGTC 1 cut(s) 52
AccII CGCG 1 cut(s) 155
AciI CCGC 1 cut(s) 52
AcoI YGGCCR 1 cut(s) 348
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 2 cut(s) 125, 158
AgsI TTSAA 2 cut(s) 203, 217
AjiI CACGTC 1 cut(s) 361
AluBI AGCT 2 cut(s) 256, 276
AluI AGCT 2 cut(s) 256, 276
AoxI GGCC 1 cut(s) 348
AspLEI GCGC 1 cut(s) 155
BalI TGGCCA 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 210
BmgBI CACGTC 1 cut(s) 361
BmrI ACTGGG 1 cut(s) 27
BmsI GCATC 3 cut(s) 136, 234, 350
BmuI ACTGGG 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 33
BseGI GGATG 3 cut(s) 249, 325, 334
BseNI ACTGG 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 350
BsnI GGCC 1 cut(s) 350
BspACI CCGC 1 cut(s) 52
BspANI GGCC 1 cut(s) 350
BspFNI CGCG 1 cut(s) 155
BsrI ACTGG 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 151
BstF5I GGATG 3 cut(s) 249, 325, 334
BstFNI CGCG 1 cut(s) 155
BstHHI GCGC 1 cut(s) 155
BstMWI GCNNNNNNNGC 3 cut(s) 49, 253, 347
BstUI CGCG 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 350
BtrI CACGTC 1 cut(s) 361
BtsCI GGATG 3 cut(s) 249, 325, 334
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 151
CfoI GCGC 1 cut(s) 155
CseI GACGC 1 cut(s) 288
Csp6I GTAC 2 cut(s) 124, 157
CviJI RGCY 4 cut(s) 113, 256, 276, 350
CviKI_1 RGCY 4 cut(s) 113, 256, 276, 350
CviQI GTAC 2 cut(s) 124, 157
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 162
FaiI YATR 6 cut(s) 86, 117, 164, 170, 260, 374
FokI GGATG 3 cut(s) 256, 332, 341
GlaI GCGC 1 cut(s) 154
HaeIII GGCC 1 cut(s) 350
HgaI GACGC 1 cut(s) 288
HhaI GCGC 1 cut(s) 155
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HincII GTYRAC 2 cut(s) 57, 364
HindII GTYRAC 2 cut(s) 57, 364
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 2 cut(s) 8, 268
Hpy166II GTNNAC 2 cut(s) 57, 364
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 1 cut(s) 303
Hpy8I GTNNAC 2 cut(s) 57, 364
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 3 cut(s) 84, 335, 341
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 253, 347
HpySE526I ACGT 1 cut(s) 360
HspAI GCGC 1 cut(s) 153
LpnPI CCDG 5 cut(s) 46, 102, 153, 188, 217
LweI GCATC 3 cut(s) 136, 234, 350
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 35
MboII GAAGA 4 cut(s) 155, 190, 215, 229
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 3 cut(s) 198, 369, 376
MluNI TGGCCA 1 cut(s) 350
MnlI CCTC 3 cut(s) 42, 234, 310
Mox20I TGGCCA 1 cut(s) 350
MscI TGGCCA 1 cut(s) 350
MseI TTAA 1 cut(s) 379
MslI CAYNNNNRTG 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 350
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 3 cut(s) 49, 253, 347
NmuCI GTSAC 1 cut(s) 35
PfeI GAWTC 2 cut(s) 8, 268
PsiI TTATAA 2 cut(s) 117, 374
PsrI GAACNNNNNNTAC 2 cut(s) 149, 181
RsaI GTAC 2 cut(s) 125, 158
RsaNI GTAC 2 cut(s) 124, 157
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 1 cut(s) 379
SetI ASST 5 cut(s) 91, 142, 258, 278, 363
SfaNI GCATC 3 cut(s) 136, 234, 350
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 3 cut(s) 198, 369, 376
SsiI CCGC 1 cut(s) 52
TaiI ACGT 1 cut(s) 363
TaqI TCGA 1 cut(s) 224
TasI AATT 3 cut(s) 198, 369, 376
TfiI GAWTC 2 cut(s) 8, 268
Tru1I TTAA 1 cut(s) 379
Tru9I TTAA 1 cut(s) 379
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 157
TspRI CASTG 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.