pycom15g28670

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002083
Physical Location & Seq
Forward (+)
24749182 .. 24750258
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g28670.1

Sequence Viewer

Length: 1077 bp
ATGTGTCCCTATGTGGCTAACAGCGGCCTCGGCCAGCCGCATCCCAAATTAGGCTCCGCCGCCTTGTGGTTCGCCACCCATCAGTTCATTGCCGAGGTGATCTTCCACGCACGAGTGGAGAATCACCCCTGCCGCACTCTTGATCCAACACGTGCCGCTATCTTCTACGTTCCTTTCTACGGCGGCCTCCACGCCTCCAGCAAGTTCAAGGAAGCCAACCTCACCGCTCGCGACGAGCTCGCCTTTGACTTGGTCGACTACGTTCAGTCCCAGCCTTGGTGGAAGAAGCACAAAGGTAGAGACCACTTTATCACCCTTGGGAGGACCGCGTGGGATTTCATGAGGGTCACCGATGGTCCTAATTTCGGAGCCAACTCCCTCCTCAACCTACCAGCCGTTAAAAACATGTCGGTGCTGACCGTGGAGAGGCATCCTTGGAAAGGGTCAAACCAACACGGCTTGCCCTACCCTTCCTATTTCCACCCGTCCACTTGGCAGGAGATGGTGGCCTGGCAGAACAGAGTGAGGGGAATGGACCGACCCCACTTGTTTTCTTTCATCGGTGGGCCCAGAAAGGGGTTAGAAAAAGCGGCCGTTCGGGACAAGTTCATAAGGCAATGCGGTGAGTCGACCCGCTGCATGCTTTTAAAATGTGGGTCTGGGGCCAGCAAATGCCACGTGCCCAGCGAGGTGCTAAAGGTGATGACGGAGTCGCAGTTCTGCTTACAAGCGCCCGGCGACTCGTTCACCCGGCGGTCAACCTTCGACTCGGTGCTTGCCGGCTGCATACCGGTTTTCTCGTCGCCGCACACGGCGTACACTCAGTACAAGTGGTTTTTACCTGGTGACGAGAGCACGTATTCGGTTTACATTGACGAGAAGAGCGACGCGAGTAAGAGAATCGAAGAGGAGCTGCTGAAGATTCCGAAAGAAAAGGTGACGGCGATGCGAGAAAAGCTCATAGAATTGATCGCAAGTCTGACTTACGCGCATCCGAATGCGACTAATCTTGGGTTTGGGGACGCCGTGGACGTTGCACTTACATCGTTGGCCAAGCACGTCCAGAAAATTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

359

Amino Acids

40.26

Weight (kDa)

8.99

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 3 - 295 2.6e-68 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 227
AccI GTMKAC 2 cut(s) 255, 629
AccII CGCG 4 cut(s) 231, 329, 890, 989
AclWI GGATC 1 cut(s) 137
AcoI YGGCCR 3 cut(s) 31, 591, 1050
AcuI CTGAAG 1 cut(s) 938
AcvI CACGTG 2 cut(s) 152, 679
AcyI GRCGYC 1 cut(s) 1023
AfaI GTAC 2 cut(s) 818, 827
AflIII ACRYGT 2 cut(s) 149, 405
AgeI ACCGGT 1 cut(s) 790
AgsI TTSAA 1 cut(s) 208
AjiI CACGTC 1 cut(s) 1060
AjnI CCWGG 2 cut(s) 509, 841
AloI GAACNNNNNNTCC 2 cut(s) 701, 733
AluBI AGCT 3 cut(s) 238, 913, 958
AluI AGCT 3 cut(s) 238, 913, 958
Alw21I GWGCWC 2 cut(s) 240, 857
Alw26I GTCTC 1 cut(s) 294
AlwI GGATC 1 cut(s) 137
AoxI GGCC 8 cut(s) 25, 31, 184, 507, 566, 591, 663, 1050
ApaI GGGCCC 1 cut(s) 570
ApeKI GCWGC 3 cut(s) 636, 783, 913
AsiGI ACCGGT 1 cut(s) 790
AspLEI GCGC 2 cut(s) 733, 991
AspS9I GGNCC 6 cut(s) 324, 356, 535, 566, 567, 663
AsuC2I CCSGG 2 cut(s) 735, 751
AvaII GGWCC 3 cut(s) 324, 356, 535
BaeGI GKGCMC 2 cut(s) 570, 684
BalI TGGCCA 1 cut(s) 1052
BanII GRGCYC 2 cut(s) 240, 570
BauI CACGAG 1 cut(s) 111
BbrPI CACGTG 2 cut(s) 152, 679
Bbv12I GWGCWC 2 cut(s) 240, 857
BbvI GCAGC 3 cut(s) 623, 770, 900
BccI CCATC 3 cut(s) 87, 347, 496
BceAI ACGGC 7 cut(s) 196, 380, 472, 578, 828, 957, 1010
BcgI CGANNNNNNTGC 2 cut(s) 1026, 1060
BciT130I CCWGG 2 cut(s) 511, 843
BcnI CCSGG 2 cut(s) 735, 751
BcoDI GTCTC 1 cut(s) 294
BfoI RGCGCY 1 cut(s) 734
Bme1390I CCNGG 4 cut(s) 511, 735, 751, 843
Bme18I GGWCC 3 cut(s) 324, 356, 535
BmgBI CACGTC 1 cut(s) 1060
BmgT120I GGNCC 6 cut(s) 324, 356, 535, 566, 567, 663
BmiI GGNNCC 4 cut(s) 55, 370, 568, 664
BmrFI CCNGG 4 cut(s) 511, 735, 751, 843
BmsI GCATC 4 cut(s) 49, 439, 936, 1000
BplI GAGNNNNNCTC 2 cut(s) 942, 974
BpmI CTGGAG 1 cut(s) 181
BpuMI CCSGG 2 cut(s) 735, 751
BsaAI YACGTR 3 cut(s) 152, 679, 858
BsaHI GRCGYC 1 cut(s) 1023
BsaI GGTCTC 1 cut(s) 294
BsaJI CCNNGG 7 cut(s) 28, 93, 275, 316, 420, 434, 1026
BsaWI WCCGGW 1 cut(s) 790
BsaXI ACNNNNNCTCC 2 cut(s) 701, 731
Bse118I RCCGGY 2 cut(s) 779, 790
Bse3DI GCAATG 2 cut(s) 87, 623
BseBI CCWGG 2 cut(s) 511, 843
BseDI CCNNGG 7 cut(s) 28, 93, 275, 316, 420, 434, 1026
BseGI GGATG 3 cut(s) 40, 430, 991
BseMI GCAATG 2 cut(s) 87, 623
BseMII CTCAG 1 cut(s) 836
BseRI GAGGAG 2 cut(s) 371, 923
BseSI GKGCMC 2 cut(s) 570, 684
BseX3I CGGCCG 1 cut(s) 591
BseXI GCAGC 3 cut(s) 623, 770, 900
BseYI CCCAGC 2 cut(s) 270, 683
Bsh1236I CGCG 4 cut(s) 231, 329, 890, 989
Bsh1285I CGRYCG 1 cut(s) 594
BshFI GGCC 8 cut(s) 27, 33, 186, 509, 568, 593, 665, 1052
BshTI ACCGGT 1 cut(s) 790
BsiEI CGRYCG 1 cut(s) 594
BsiHKAI GWGCWC 2 cut(s) 240, 857
BsiSI CCGG 4 cut(s) 735, 751, 780, 791
BslFI GGGAC 3 cut(s) 253, 614, 1034
BsmAI GTCTC 1 cut(s) 294
BsmFI GGGAC 3 cut(s) 253, 614, 1034
BsmI GAATGC 1 cut(s) 1003
BsnI GGCC 8 cut(s) 27, 33, 186, 509, 568, 593, 665, 1052
Bso31I GGTCTC 1 cut(s) 294
Bsp120I GGGCCC 1 cut(s) 566
Bsp1286I GDGCHC 4 cut(s) 240, 570, 684, 857
Bsp143I GATC 3 cut(s) 99, 142, 969
Bsp68I TCGCGA 1 cut(s) 231
BspANI GGCC 8 cut(s) 27, 33, 186, 509, 568, 593, 665, 1052
BspCNI CTCAG 1 cut(s) 835
BspFNI CGCG 4 cut(s) 231, 329, 890, 989
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 4 cut(s) 55, 370, 568, 664
BspPI GGATC 1 cut(s) 137
BspQI GCTCTTC 1 cut(s) 875
BspTNI GGTCTC 1 cut(s) 294
BsrBI CCGCTC 1 cut(s) 227
BsrDI GCAATG 2 cut(s) 87, 623
BsrFI RCCGGY 2 cut(s) 779, 790
BssAI RCCGGY 2 cut(s) 779, 790
BssECI CCNNGG 7 cut(s) 28, 93, 275, 316, 420, 434, 1026
BssMI GATC 3 cut(s) 99, 142, 969
BssNI GRCGYC 1 cut(s) 1023
BssSI CACGAG 1 cut(s) 111
BssT1I CCWWGG 3 cut(s) 275, 316, 434
Bst2BI CACGAG 1 cut(s) 111
Bst2UI CCWGG 2 cut(s) 511, 843
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 2 cut(s) 875, 900
BstACI GRCGYC 1 cut(s) 1023
BstBAI YACGTR 3 cut(s) 152, 679, 858
BstC8I GCNNGC 8 cut(s) 35, 229, 240, 461, 641, 667, 777, 781
BstDEI CTNAG 1 cut(s) 822
BstDSI CCRYGG 2 cut(s) 420, 1026
BstEII GGTNACC 1 cut(s) 346
BstENI CCTNNNNNAGG 1 cut(s) 438
BstF5I GGATG 3 cut(s) 40, 430, 991
BstFNI CGCG 4 cut(s) 231, 329, 890, 989
BstH2I RGCGCY 1 cut(s) 734
BstHHI GCGC 2 cut(s) 733, 991
BstKTI GATC 3 cut(s) 102, 145, 972
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 3 cut(s) 99, 142, 969
BstMCI CGRYCG 1 cut(s) 594
BstMWI GCNNNNNNNGC 2 cut(s) 30, 955
BstNI CCWGG 2 cut(s) 511, 843
BstNSI RCATGY 2 cut(s) 409, 643
BstPI GGTNACC 1 cut(s) 346
BstSCI CCNGG 4 cut(s) 509, 733, 749, 841
BstSLI GKGCMC 2 cut(s) 570, 684
BstUI CGCG 4 cut(s) 231, 329, 890, 989
BstV1I GCAGC 3 cut(s) 623, 770, 900
BstZI CGGCCG 1 cut(s) 591
BsuRI GGCC 8 cut(s) 27, 33, 186, 509, 568, 593, 665, 1052
BtgI CCRYGG 2 cut(s) 420, 1026
BtgZI GCGATG 1 cut(s) 959
BtrI CACGTC 1 cut(s) 1060
BtsCI GGATG 3 cut(s) 40, 430, 991
BtuMI TCGCGA 1 cut(s) 231
Cac8I GCNNGC 8 cut(s) 35, 229, 240, 461, 641, 667, 777, 781
CciI TCATGA 1 cut(s) 339
CfoI GCGC 2 cut(s) 733, 991
Cfr10I RCCGGY 2 cut(s) 779, 790
Cfr13I GGNCC 6 cut(s) 324, 356, 535, 566, 567, 663
CseI GACGC 2 cut(s) 896, 1031
CsiI ACCWGGT 1 cut(s) 841
Csp6I GTAC 2 cut(s) 817, 826
CspAI ACCGGT 1 cut(s) 790
CviAII CATG 3 cut(s) 340, 406, 640
CviQI GTAC 2 cut(s) 817, 826
DdeI CTNAG 1 cut(s) 822
DpnI GATC 3 cut(s) 101, 144, 971
DpnII GATC 3 cut(s) 99, 142, 969
DraI TTTAAA 1 cut(s) 648
EaeI YGGCCR 3 cut(s) 31, 591, 1050
EagI CGGCCG 1 cut(s) 591
Eam1104I CTCTTC 2 cut(s) 875, 900
EarI CTCTTC 2 cut(s) 875, 900
EciI GGCGGA 1 cut(s) 46
Ecl136II GAGCTC 1 cut(s) 238
EclXI CGGCCG 1 cut(s) 591
Eco130I CCWWGG 3 cut(s) 275, 316, 434
Eco24I GRGCYC 2 cut(s) 240, 570
Eco31I GGTCTC 1 cut(s) 294
Eco47I GGWCC 3 cut(s) 324, 356, 535
Eco52I CGGCCG 1 cut(s) 591
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 938
Eco72I CACGTG 2 cut(s) 152, 679
Eco91I GGTNACC 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 238
EcoNI CCTNNNNNAGG 1 cut(s) 438
EcoO65I GGTNACC 1 cut(s) 346
EcoRII CCWGG 2 cut(s) 509, 841
EcoT14I CCWWGG 3 cut(s) 275, 316, 434
EcoT38I GRGCYC 2 cut(s) 240, 570
ErhI CCWWGG 3 cut(s) 275, 316, 434
FaeI CATG 3 cut(s) 343, 409, 643
FaiI YATR 9 cut(s) 12, 341, 407, 611, 641, 788, 962, 1073, 1075
FalI AAGNNNNNCTT 2 cut(s) 967, 999
FaqI GGGAC 3 cut(s) 253, 614, 1034
FatI CATG 3 cut(s) 339, 405, 639
FauI CCCGC 1 cut(s) 641
FblI GTMKAC 2 cut(s) 255, 629
FokI GGATG 3 cut(s) 27, 417, 978
FriOI GRGCYC 2 cut(s) 240, 570
GlaI GCGC 2 cut(s) 732, 990
GsaI CCCAGC 2 cut(s) 274, 687
GsuI CTGGAG 1 cut(s) 181
HaeII RGCGCY 1 cut(s) 734
HaeIII GGCC 8 cut(s) 27, 33, 186, 509, 568, 593, 665, 1052
HapII CCGG 4 cut(s) 735, 751, 780, 791
HgaI GACGC 2 cut(s) 896, 1031
HhaI GCGC 2 cut(s) 733, 991
Hin1I GRCGYC 1 cut(s) 1023
Hin1II CATG 3 cut(s) 343, 409, 643
Hin6I GCGC 2 cut(s) 731, 989
HinP1I GCGC 2 cut(s) 731, 989
HincII GTYRAC 3 cut(s) 256, 630, 759
HindII GTYRAC 3 cut(s) 256, 630, 759
HinfI GANTC 7 cut(s) 121, 626, 710, 740, 767, 900, 922
HpaII CCGG 4 cut(s) 735, 751, 780, 791
Hpy166II GTNNAC 8 cut(s) 256, 489, 630, 747, 759, 819, 868, 1030
Hpy188I TCNGA 4 cut(s) 368, 927, 981, 996
Hpy188III TCNNGA 5 cut(s) 140, 230, 340, 599, 1063
Hpy8I GTNNAC 8 cut(s) 256, 489, 630, 747, 759, 819, 868, 1030
Hpy99I CGWCG 3 cut(s) 236, 805, 890
HpyAV CCTTC 2 cut(s) 480, 772
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 7 cut(s) 151, 168, 261, 678, 857, 1032, 1059
HpyCH4V TGCA 3 cut(s) 639, 786, 1037
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 955
HpyF3I CTNAG 1 cut(s) 822
HpySE526I ACGT 7 cut(s) 151, 168, 261, 678, 857, 1032, 1059
Hsp92I GRCGYC 1 cut(s) 1023
Hsp92II CATG 3 cut(s) 343, 409, 643
HspAI GCGC 2 cut(s) 731, 989
KroI GCCGGC 1 cut(s) 779
KroNI GCCGGC 1 cut(s) 781
Kzo9I GATC 3 cut(s) 99, 142, 969
LguI GCTCTTC 1 cut(s) 875
LmnI GCTCC 3 cut(s) 59, 368, 910
Lsp1109I GCAGC 3 cut(s) 623, 770, 900
LweI GCATC 4 cut(s) 49, 439, 936, 1000
MabI ACCWGGT 1 cut(s) 841
MaeII ACGT 7 cut(s) 151, 168, 261, 678, 857, 1032, 1059
MaeIII GTNAC 3 cut(s) 346, 845, 937
MalI GATC 3 cut(s) 101, 144, 971
MbiI CCGCTC 1 cut(s) 227
MboI GATC 3 cut(s) 99, 142, 969
MboII GAAGA 6 cut(s) 94, 154, 295, 892, 917, 931
MhlI GDGCHC 4 cut(s) 240, 570, 684, 857
MlsI TGGCCA 1 cut(s) 1052
MluCI AATT 4 cut(s) 47, 361, 965, 1068
MluNI TGGCCA 1 cut(s) 1052
MlyI GAGTC 4 cut(s) 635, 719, 734, 761
MmeI TCCRAC 1 cut(s) 170
Mox20I TGGCCA 1 cut(s) 1052
MroNI GCCGGC 1 cut(s) 779
MscI TGGCCA 1 cut(s) 1052
MseI TTAA 2 cut(s) 399, 647
MslI CAYNNNNRTG 2 cut(s) 410, 996
Msp20I TGGCCA 1 cut(s) 1052
MspA1I CMGCKG 2 cut(s) 24, 636
MspI CCGG 4 cut(s) 735, 751, 780, 791
MspR9I CCNGG 4 cut(s) 511, 735, 751, 843
Mva1269I GAATGC 1 cut(s) 1003
MvaI CCWGG 2 cut(s) 511, 843
MvnI CGCG 4 cut(s) 231, 329, 890, 989
MwoI GCNNNNNNNGC 2 cut(s) 30, 955
NaeI GCCGGC 1 cut(s) 781
NciI CCSGG 2 cut(s) 735, 751
NdeII GATC 3 cut(s) 99, 142, 969
NgoMIV GCCGGC 1 cut(s) 779
NlaIII CATG 3 cut(s) 343, 409, 643
NlaIV GGNNCC 4 cut(s) 55, 370, 568, 664
NmeAIII GCCGAG 2 cut(s) 9, 118
NmuCI GTSAC 3 cut(s) 346, 845, 937
NruI TCGCGA 1 cut(s) 231
NspI RCATGY 2 cut(s) 409, 643
PaeI GCATGC 1 cut(s) 643
PagI TCATGA 1 cut(s) 339
PciI ACATGT 1 cut(s) 405
PciSI GCTCTTC 1 cut(s) 875
PcsI WCGNNNNNNNCGW 3 cut(s) 684, 882, 1029
PctI GAATGC 1 cut(s) 1003
PdiI GCCGGC 1 cut(s) 781
PfeI GAWTC 3 cut(s) 121, 900, 922
PflFI GACNNNGTC 2 cut(s) 251, 709
PinAI ACCGGT 1 cut(s) 790
PleI GAGTC 4 cut(s) 634, 718, 734, 761
PmaCI CACGTG 2 cut(s) 152, 679
PmlI CACGTG 2 cut(s) 152, 679
PpsI GAGTC 4 cut(s) 634, 718, 734, 761
Ppu21I YACGTR 3 cut(s) 152, 679, 858
PscI ACATGT 1 cut(s) 405
Psp124BI GAGCTC 1 cut(s) 240
Psp6I CCWGG 2 cut(s) 509, 841
PspCI CACGTG 2 cut(s) 152, 679
PspEI GGTNACC 1 cut(s) 346
PspFI CCCAGC 2 cut(s) 270, 683
PspGI CCWGG 2 cut(s) 509, 841
PspN4I GGNNCC 4 cut(s) 55, 370, 568, 664
PspOMI GGGCCC 1 cut(s) 566
PspPI GGNCC 6 cut(s) 324, 356, 535, 566, 567, 663
PsyI GACNNNGTC 2 cut(s) 251, 709
RruI TCGCGA 1 cut(s) 231
RsaI GTAC 2 cut(s) 818, 827
RsaNI GTAC 2 cut(s) 817, 826
RseI CAYNNNNRTG 2 cut(s) 410, 996
SacI GAGCTC 1 cut(s) 240
SalI GTCGAC 2 cut(s) 254, 628
SapI GCTCTTC 1 cut(s) 875
SaqAI TTAA 2 cut(s) 399, 647
Sau3AI GATC 3 cut(s) 99, 142, 969
Sau96I GGNCC 6 cut(s) 324, 356, 535, 566, 567, 663
SchI GAGTC 4 cut(s) 635, 719, 734, 761
ScrFI CCNGG 4 cut(s) 511, 735, 751, 843
SduI GDGCHC 4 cut(s) 240, 570, 684, 857
SexAI ACCWGGT 1 cut(s) 841
SfaNI GCATC 4 cut(s) 49, 439, 936, 1000
SinI GGWCC 3 cut(s) 324, 356, 535
SmiMI CAYNNNNRTG 2 cut(s) 410, 996
SphI GCATGC 1 cut(s) 643
Sse9I AATT 4 cut(s) 47, 361, 965, 1068
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 4 cut(s) 509, 733, 749, 841
StyI CCWWGG 3 cut(s) 275, 316, 434
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 7 cut(s) 154, 171, 264, 681, 860, 1035, 1062
TaqI TCGA 4 cut(s) 255, 629, 765, 903
TaqII GACCGA 1 cut(s) 552
TasI AATT 4 cut(s) 47, 361, 965, 1068
TatI WGTACW 1 cut(s) 825
TauI GCSGC 8 cut(s) 27, 40, 62, 135, 158, 186, 593, 808
TfiI GAWTC 3 cut(s) 121, 900, 922
Tru1I TTAA 2 cut(s) 399, 647
Tru9I TTAA 2 cut(s) 399, 647
TseFI GTSAC 3 cut(s) 346, 845, 937
TseI GCWGC 3 cut(s) 636, 783, 913
Tsp45I GTSAC 3 cut(s) 346, 845, 937
TspDTI ATGAA 4 cut(s) 76, 328, 547, 598
TspGWI ACGGA 1 cut(s) 722
Tth111I GACNNNGTC 2 cut(s) 251, 709
VpaK11BI GGWCC 3 cut(s) 324, 356, 535
XagI CCTNNNNNAGG 1 cut(s) 438
XceI RCATGY 2 cut(s) 409, 643
XmiI GTMKAC 2 cut(s) 255, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.