Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002083

Physical Location & Seq

Genomic Coordinates Forward (+)

34629619 .. 34629900

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1324800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTGTCCCCATGTGGCGAACCGCGGCCTTGGCCAGCCGCATCCCAAATTAGGCTCCGCCGCCTCGTGGTTCGCCACCCATCAGTTCATTGCCGAGATGATCTTCCACGCACGAGTGGAAAACCACCCCTGCCGCACTCTTGATCCAACACGTGCCGCTCTCTTCTACGTCCCTTTCTACGGCGGCGTCCACGCCTCCAGCAAGTTCAAGGAAGCCAACCTCACCGCTCGCGACGAGCTCGCCGTTGACTTGGTCGACTACGTTCAGTCCCAGCCTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

94

Amino Acids

10.42

Weight (kDa)

7.01

Isoelectric Point (pI)

27.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	5 - 92	3.6e-15	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68470
fragaria_vesca	FvH4_1g20990 FvH4_1g21000 FvH4_1g21020
malus_domestica	MD01G1028500.v1.1 MD01G1028700.v1.1 MD15G1324800.v1.1 MD15G1324900.v1.1 MD15G1325000.v1.1 MD15G1325100.v1.1
prunus_persica	Prupe.6G185700_v2.0.a1 Prupe.6G185800_v2.0.a1 Prupe.6G186000_v2.0.a1
pyrus_communis	pycom01g05660 pycom01g05690 pycom15g28660 pycom15g28670
rosa_chinensis	RchiOBHm_Chr2g0114491 RchiOBHm_Chr2g0114511
rosa_laevigata	RLG00000018105 RLG00000018109 RLG00000018110
rosa_multiflora	Rmu_co8320661.1_g000001 Rmu_sc0000371.1_g000001 Rmu_sc0000371.1_g000005 Rmu_sc0015718.1_g000003 Rmu_sc0015718.1_g000009
rosa_roxburghii	Rroxscaffold_2G00130190 Rroxscaffold_2G00130220 Rroxscaffold_2G00130250
rosa_rugosa	Rorug02G0190500 Rorug02G0190500
rosa_samantha	Rh2AG248000 Rh2AG248200 Rh2AG248400 Rh2BG257800 Rh2BG258000 Rh2CG251400 Rh2CG251500 Rh2CG251700 Rh2DG256200 Rh2DG256400
rosa_wichuraiana	Rw2G019290 Rw2G019310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	158, 227
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	2 cut(s)	24, 231
AciI	CCGC	9 cut(s)	22, 24, 38, 57, 60, 133, 156, 183, 225
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	31
AcvI	CACGTG	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	186
AfiI	CCNNNNNNNGG	4 cut(s)	50, 66, 179, 276
AflIII	ACRYGT	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	208
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	2 cut(s)	25, 31
AsuHPI	GGTGA	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	240
BauI	CACGAG	2 cut(s)	64, 111
BbrPI	CACGTG	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	240
BccI	CCATC	1 cut(s)	87
BceAI	ACGGC	2 cut(s)	196, 227
BisI	GCNGC	6 cut(s)	25, 38, 60, 133, 156, 184
BlsI	GCNGC	6 cut(s)	26, 39, 61, 134, 157, 185
BmiI	GGNNCC	1 cut(s)	55
BmsI	GCATC	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	181
BsaAI	YACGTR	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	22, 28, 275
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 66, 179, 276
Bse3DI	GCAATG	1 cut(s)	87
BseDI	CCNNGG	3 cut(s)	22, 28, 275
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	4 cut(s)	50, 66, 179, 276
BseMI	GCAATG	1 cut(s)	87
BseYI	CCCAGC	1 cut(s)	270
Bsh1236I	CGCG	2 cut(s)	24, 231
BshFI	GGCC	2 cut(s)	27, 33
BsiHKAI	GWGCWC	1 cut(s)	240
BslFI	GGGAC	2 cut(s)	155, 253
BslI	CCNNNNNNNGG	4 cut(s)	50, 66, 179, 276
BsmFI	GGGAC	2 cut(s)	155, 253
BsnI	GGCC	2 cut(s)	27, 33
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	99, 142
Bsp68I	TCGCGA	1 cut(s)	231
BspACI	CCGC	9 cut(s)	22, 24, 38, 57, 60, 133, 156, 183, 225
BspANI	GGCC	2 cut(s)	27, 33
BspFNI	CGCG	2 cut(s)	24, 231
BspLI	GGNNCC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	137
BsrBI	CCGCTC	2 cut(s)	158, 227
BsrDI	GCAATG	1 cut(s)	87
BssECI	CCNNGG	3 cut(s)	22, 28, 275
BssMI	GATC	2 cut(s)	99, 142
BssNI	GRCGYC	1 cut(s)	186
BssSI	CACGAG	2 cut(s)	64, 111
BssT1I	CCWWGG	2 cut(s)	28, 275
Bst2BI	CACGAG	2 cut(s)	64, 111
Bst6I	CTCTTC	1 cut(s)	167
BstACI	GRCGYC	1 cut(s)	186
BstBAI	YACGTR	1 cut(s)	152
BstC8I	GCNNGC	3 cut(s)	35, 229, 240
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	40
BstFNI	CGCG	2 cut(s)	24, 231
BstKTI	GATC	2 cut(s)	102, 145
BstMBI	GATC	2 cut(s)	99, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstUI	CGCG	2 cut(s)	24, 231
BsuRI	GGCC	2 cut(s)	27, 33
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	40
BtuMI	TCGCGA	1 cut(s)	231
Cac8I	GCNNGC	3 cut(s)	35, 229, 240
Cfr42I	CCGCGG	1 cut(s)	25
CseI	GACGC	1 cut(s)	175
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	7 cut(s)	27, 33, 37, 54, 215, 238, 274
CviKI_1	RGCY	7 cut(s)	27, 33, 37, 54, 215, 238, 274
DpnI	GATC	2 cut(s)	101, 144
DpnII	GATC	2 cut(s)	99, 142
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	28, 275
Eco24I	GRGCYC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	238
Eco72I	CACGTG	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	238
EcoT14I	CCWWGG	2 cut(s)	28, 275
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	2 cut(s)	28, 275
FaeI	CATG	1 cut(s)	14
FaiI	YATR	1 cut(s)	12
FaqI	GGGAC	2 cut(s)	155, 253
FatI	CATG	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	6 cut(s)	25, 38, 60, 133, 156, 184
FokI	GGATG	1 cut(s)	27
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	6 cut(s)	25, 38, 60, 133, 156, 184
GluI	GCNGC	6 cut(s)	25, 38, 60, 133, 156, 184
GsaI	CCCAGC	1 cut(s)	274
GsuI	CTGGAG	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	27, 33
HgaI	GACGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	14
HincII	GTYRAC	2 cut(s)	247, 256
HindII	GTYRAC	2 cut(s)	247, 256
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	3 cut(s)	190, 247, 256
Hpy188III	TCNNGA	2 cut(s)	140, 230
Hpy8I	GTNNAC	3 cut(s)	190, 247, 256
Hpy99I	CGWCG	1 cut(s)	236
HpyCH4IV	ACGT	3 cut(s)	151, 168, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpySE526I	ACGT	3 cut(s)	151, 168, 261
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	14
KspI	CCGCGG	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	99, 142
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	3 cut(s)	47, 142, 211
LweI	GCATC	1 cut(s)	49
MaeII	ACGT	3 cut(s)	151, 168, 261
MalI	GATC	2 cut(s)	101, 144
MbiI	CCGCTC	2 cut(s)	158, 227
MboI	GATC	2 cut(s)	99, 142
MboII	GAAGA	2 cut(s)	94, 154
MhlI	GDGCHC	1 cut(s)	240
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	1 cut(s)	47
MluNI	TGGCCA	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	3 cut(s)	73, 205, 230
Mox20I	TGGCCA	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	33
Msp20I	TGGCCA	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	24
MvnI	CGCG	2 cut(s)	24, 231
MwoI	GCNNNNNNNGC	1 cut(s)	30
NdeII	GATC	2 cut(s)	99, 142
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	1 cut(s)	55
NmeAIII	GCCGAG	1 cut(s)	118
NruI	TCGCGA	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PflFI	GACNNNGTC	1 cut(s)	251
PkrI	GCNGC	6 cut(s)	26, 39, 61, 134, 157, 185
PmaCI	CACGTG	1 cut(s)	152
PmlI	CACGTG	1 cut(s)	152
Ppu21I	YACGTR	1 cut(s)	152
Psp124BI	GAGCTC	1 cut(s)	240
PspCI	CACGTG	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	55
PsyI	GACNNNGTC	1 cut(s)	251
RruI	TCGCGA	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	240
SacII	CCGCGG	1 cut(s)	25
SalI	GTCGAC	1 cut(s)	254
SatI	GCNGC	6 cut(s)	25, 38, 60, 133, 156, 184
Sau3AI	GATC	2 cut(s)	99, 142
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	5 cut(s)	154, 171, 222, 240, 264
SfaNI	GCATC	1 cut(s)	49
Sfr303I	CCGCGG	1 cut(s)	25
SgrBI	CCGCGG	1 cut(s)	25
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	9 cut(s)	22, 24, 38, 57, 60, 133, 156, 183, 225
SstI	GAGCTC	1 cut(s)	240
StyI	CCWWGG	2 cut(s)	28, 275
TaiI	ACGT	3 cut(s)	154, 171, 264
TaqI	TCGA	1 cut(s)	255
TasI	AATT	1 cut(s)	47
TauI	GCSGC	6 cut(s)	27, 40, 62, 135, 158, 186
TspDTI	ATGAA	1 cut(s)	76
Tth111I	GACNNNGTC	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.