Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007243

Physical Location & Seq

Genomic Coordinates Reverse (-)

13069251 .. 13069844

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGTATTTCACTCGAGCTTTCTTCTCTTAGCTGTGACTTGAGAATCATACAAGCCAAAAACATAGAGTTCCTCAAGACCACGGGAAACCTGTTCGTTAGATACTATCTTTCTGCAGGGGGTGGCAAAAGAGTTGGTCTGAACACTCGAGAAATCTCAGCCAAGTCTGATCACATCTGGAACGAGTCCATTTCCTTGGAGTGTAATGGAAGCAATAGGTTTGTGCAAGACACTGTGGTTTTTGAGCTCCGGTGGAGGAGCACAGTGCCTGTTTTTGGAAACATCGGGGGATCCCAACTACTGGGCAGGGCAGAGGTTCCATGGAAAGAAGTGCTCGAGTCACCAAACATGGAATTGGATAAGTGGCTCATGATGGTTCCAAGAAGTACTAGCGGCCGTGCTCTTGAAGGCAAACCACCTAAACTACAGGTATCTATCAAAGTTGCAGTCCAAACAGAAGTAGGAATGGAGAAAAGGACGCAGAGAAGGACAAAAAAGTGGGATGAGTGTGGTTGCAAAGATGGTCATGATTGTGGTTGCACTTGTTCTGATTACGAAATTTTTGCACTAGCAGCTTTGCTAGAGGCACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

198

Amino Acids

21.99

Weight (kDa)

8.15

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10210 AT5G65030
fragaria_vesca	FvH4_1g20980
prunus_persica	Prupe.6G186100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114461 RchiOBHm_Chr2g0114471
rosa_laevigata	RLG00000018103 RLG00000018104
rosa_multiflora	Rmu_co8319255.1_g000001 Rmu_sc0000431.1_g000035 Rmu_sc0000431.1_g000038 Rmu_sc0003151.1_g000023 Rmu_sc0017189.1_g000003
rosa_roxburghii	Rroxscaffold_2G00130170 Rroxscaffold_2G00130180
rosa_rugosa	Rorug02G0190500 Rorug02G0190500
rosa_samantha	Rh2AG247600 Rh2BG257600 Rh2BG257700 Rh2CG251100 Rh2DG255700 Rh2DG255800
rosa_wichuraiana	Rw2G019260 Rw2G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	301
AciI	CCGC	1 cut(s)	393
AclWI	GGATC	2 cut(s)	285, 298
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	558
AfaI	GTAC	1 cut(s)	388
AfiI	CCNNNNNNNGG	2 cut(s)	275, 301
AgsI	TTSAA	1 cut(s)	407
AluBI	AGCT	4 cut(s)	19, 33, 247, 575
AluI	AGCT	4 cut(s)	19, 33, 247, 575
Alw21I	GWGCWC	4 cut(s)	249, 263, 336, 403
AlwI	GGATC	2 cut(s)	285, 298
AlwNI	CAGNNNCTG	1 cut(s)	269
Ama87I	CYCGRG	3 cut(s)	14, 147, 335
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	1 cut(s)	558
ArsI	GACNNNNNNTTYG	2 cut(s)	432, 464
AsuHPI	GGTGA	1 cut(s)	333
AvaI	CYCGRG	3 cut(s)	14, 147, 335
BamHI	GGATCC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	4 cut(s)	249, 263, 336, 403
BbvI	GCAGC	1 cut(s)	584
BccI	CCATC	2 cut(s)	367, 515
BceAI	ACGGC	1 cut(s)	381
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BclI	TGATCA	1 cut(s)	169
BfaI	CTAG	3 cut(s)	390, 569, 581
BfmI	CTRYAG	2 cut(s)	114, 425
BisI	GCNGC	2 cut(s)	394, 573
BlsI	GCNGC	2 cut(s)	395, 574
BmcAI	AGTACT	1 cut(s)	388
BmeT110I	CYCGRG	3 cut(s)	14, 147, 335
BmiI	GGNNCC	3 cut(s)	292, 318, 378
BmrI	ACTGGG	1 cut(s)	311
BmuI	ACTGGG	1 cut(s)	311
BpuEI	CTTGAG	2 cut(s)	59, 61
BsaJI	CCNNGG	3 cut(s)	81, 195, 320
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 301
Bse1I	ACTGG	1 cut(s)	306
BseDI	CCNNGG	3 cut(s)	81, 195, 320
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	2 cut(s)	275, 301
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	271
BseX3I	CGGCCG	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	584
Bsh1285I	CGRYCG	1 cut(s)	397
BshFI	GGCC	1 cut(s)	396
BsiEI	CGRYCG	1 cut(s)	397
BsiHKAI	GWGCWC	4 cut(s)	249, 263, 336, 403
BsiHKCI	CYCGRG	3 cut(s)	14, 147, 335
BsiSI	CCGG	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	275, 301
BsnI	GGCC	1 cut(s)	396
BsoBI	CYCGRG	3 cut(s)	14, 147, 335
Bsp1286I	GDGCHC	4 cut(s)	249, 263, 336, 403
Bsp143I	GATC	2 cut(s)	169, 290
Bsp19I	CCATGG	1 cut(s)	320
BspACI	CCGC	1 cut(s)	393
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	1 cut(s)	170
BspHI	TCATGA	2 cut(s)	369, 526
BspLI	GGNNCC	3 cut(s)	292, 318, 378
BspMAI	CTGCAG	1 cut(s)	118
BspPI	GGATC	2 cut(s)	285, 298
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	3 cut(s)	81, 195, 320
BssMI	GATC	2 cut(s)	169, 290
BssT1I	CCWWGG	2 cut(s)	195, 320
Bst4CI	ACNGT	2 cut(s)	235, 265
BstDEI	CTNAG	2 cut(s)	29, 157
BstDSI	CCRYGG	2 cut(s)	81, 320
BstF5I	GGATG	1 cut(s)	508
BstKTI	GATC	2 cut(s)	172, 293
BstMBI	GATC	2 cut(s)	169, 290
BstMCI	CGRYCG	1 cut(s)	397
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstSFI	CTRYAG	2 cut(s)	114, 425
BstV1I	GCAGC	1 cut(s)	584
BstX2I	RGATCY	1 cut(s)	290
BstXI	CCANNNNNNTGG	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	290
BstZI	CGGCCG	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	396
BtgI	CCRYGG	2 cut(s)	81, 320
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	2 cut(s)	231, 270
CaiI	CAGNNNCTG	1 cut(s)	269
CciI	TCATGA	2 cut(s)	369, 526
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	4 cut(s)	321, 349, 370, 527
CviJI	RGCY	8 cut(s)	19, 33, 56, 161, 247, 367, 396, 575
CviKI_1	RGCY	8 cut(s)	19, 33, 56, 161, 247, 367, 396, 575
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	2 cut(s)	29, 157
DpnI	GATC	2 cut(s)	171, 292
DpnII	GATC	2 cut(s)	169, 290
EaeI	YGGCCR	1 cut(s)	394
EagI	CGGCCG	1 cut(s)	394
Ecl136II	GAGCTC	1 cut(s)	247
EclXI	CGGCCG	1 cut(s)	394
Eco130I	CCWWGG	2 cut(s)	195, 320
Eco24I	GRGCYC	1 cut(s)	249
Eco52I	CGGCCG	1 cut(s)	394
Eco53kI	GAGCTC	1 cut(s)	247
Eco88I	CYCGRG	3 cut(s)	14, 147, 335
EcoICRI	GAGCTC	1 cut(s)	247
EcoT14I	CCWWGG	2 cut(s)	195, 320
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	2 cut(s)	195, 320
FaeI	CATG	4 cut(s)	324, 352, 373, 530
FaiI	YATR	6 cut(s)	50, 65, 322, 350, 371, 528
FatI	CATG	4 cut(s)	320, 348, 369, 526
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	394, 573
FokI	GGATG	1 cut(s)	515
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	2 cut(s)	394, 573
FspBI	CTAG	3 cut(s)	390, 569, 581
GluI	GCNGC	2 cut(s)	394, 573
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	1 cut(s)	250
HgaI	GACGC	1 cut(s)	487
Hin1II	CATG	4 cut(s)	324, 352, 373, 530
HinfI	GANTC	3 cut(s)	45, 185, 338
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	1 cut(s)	333
Hpy188I	TCNGA	3 cut(s)	141, 169, 550
Hpy188III	TCNNGA	6 cut(s)	76, 149, 178, 370, 404, 527
HpyAV	CCTTC	2 cut(s)	401, 480
HpyCH4III	ACNGT	2 cut(s)	235, 265
HpyCH4V	TGCA	6 cut(s)	116, 226, 446, 516, 540, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	2 cut(s)	29, 157
Hsp92II	CATG	4 cut(s)	324, 352, 373, 530
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	169, 290
LmnI	GCTCC	2 cut(s)	252, 258
LpnPI	CCDG	8 cut(s)	102, 104, 163, 263, 282, 287, 292, 413
Lsp1109I	GCAGC	1 cut(s)	584
MaeI	CTAG	3 cut(s)	390, 569, 581
MaeIII	GTNAC	2 cut(s)	35, 339
MalI	GATC	2 cut(s)	171, 292
MboI	GATC	2 cut(s)	169, 290
MboII	GAAGA	1 cut(s)	15
MflI	RGATCY	1 cut(s)	290
MhlI	GDGCHC	4 cut(s)	249, 263, 336, 403
MluCI	AATT	2 cut(s)	353, 558
MlyI	GAGTC	2 cut(s)	194, 347
MnlI	CCTC	4 cut(s)	83, 249, 307, 577
MslI	CAYNNNNRTG	1 cut(s)	531
MspI	CCGG	1 cut(s)	250
MwoI	GCNNNNNNNGC	1 cut(s)	572
NcoI	CCATGG	1 cut(s)	320
NdeII	GATC	2 cut(s)	169, 290
NlaIII	CATG	4 cut(s)	324, 352, 373, 530
NlaIV	GGNNCC	3 cut(s)	292, 318, 378
NmuCI	GTSAC	2 cut(s)	35, 339
PaeR7I	CTCGAG	3 cut(s)	14, 147, 335
PagI	TCATGA	2 cut(s)	369, 526
PfeI	GAWTC	1 cut(s)	45
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	395, 574
PleI	GAGTC	2 cut(s)	193, 346
PpsI	GAGTC	2 cut(s)	193, 346
Psp124BI	GAGCTC	1 cut(s)	249
PspN4I	GGNNCC	3 cut(s)	292, 318, 378
PspXI	VCTCGAGB	2 cut(s)	14, 335
PstI	CTGCAG	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	290
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
RseI	CAYNNNNRTG	1 cut(s)	531
SacI	GAGCTC	1 cut(s)	249
SatI	GCNGC	2 cut(s)	394, 573
Sau3AI	GATC	2 cut(s)	169, 290
ScaI	AGTACT	1 cut(s)	388
SchI	GAGTC	2 cut(s)	194, 347
SduI	GDGCHC	4 cut(s)	249, 263, 336, 403
SetI	ASST	9 cut(s)	21, 35, 93, 221, 249, 318, 421, 432, 577
SfcI	CTRYAG	2 cut(s)	114, 425
Sfr274I	CTCGAG	3 cut(s)	14, 147, 335
SlaI	CTCGAG	3 cut(s)	14, 147, 335
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	5 cut(s)	14, 40, 74, 147, 335
SmoI	CTYRAG	5 cut(s)	14, 40, 74, 147, 335
Sse9I	AATT	2 cut(s)	353, 558
SsiI	CCGC	1 cut(s)	393
SspMI	CTAG	3 cut(s)	390, 569, 581
SstI	GAGCTC	1 cut(s)	249
StyI	CCWWGG	2 cut(s)	195, 320
TaaI	ACNGT	2 cut(s)	235, 265
TaqI	TCGA	3 cut(s)	15, 148, 336
TasI	AATT	2 cut(s)	353, 558
TatI	WGTACW	1 cut(s)	386
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	45
TscAI	CASTG	2 cut(s)	238, 270
TseFI	GTSAC	2 cut(s)	35, 339
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	2 cut(s)	35, 339
TspRI	CASTG	2 cut(s)	238, 270
Van91I	CCANNNNNTGG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	558
XhoI	CTCGAG	3 cut(s)	14, 147, 335
XspI	CTAG	3 cut(s)	390, 569, 581
ZrmI	AGTACT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.