Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007243

Physical Location & Seq

Genomic Coordinates Reverse (-)

25331358 .. 25331954

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018103

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGTATTCCATTAGAGCTTTCTTCTCTTAGCTGTGAACTGAGAATCATACAAGCCAAAAACATAGAGTTCATCAAGACCACGGGAAACCTGTTCGTTAGATATTATTTTTCAGCAGGGGACAGCAGAAGAATTAGGCTGAACACTCGAGAAATCTCCACCAAGTCTGACCACATCTGGAACGAGTCCATTTCCCTGGAGTGTAATGGAAGCGACAGCTTTGTGCGAGAAACTGTGGTTTTTGAGCTCCGGTGGAGGAATACCGTGCCTGTTTTTGGAAGAATTGGGGGATCACAACTACTGGGCAGGGCAGAGGTCCCATGGAAAGAAGTGCTCGAGTCACCAAACATGGAATTGGACAAGTGGGTCACGATGGTTCCAAGAAGTACTAGTGGCCGTGCTCTTGAAGGAGCCAAACCGCCTAAACTACAAGTATCGATCAAAGTTGGAGTCCAAGCAGAAGTGGGAATGGAGAAAAGGAGGCAGAGAAGGACGAAGAAGTGGGATGAGTGTGGTTGCGAAGATGGTCATGGTTATGGTTGCACATGTTCTGATTACGAAATTTTTGCACTAGCAGCTTTGCTAGAGGCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

199

Amino Acids

22.39

Weight (kDa)

8.21

Isoelectric Point (pI)

52.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10210 AT5G65030
fragaria_vesca	FvH4_1g20980
prunus_persica	Prupe.6G186100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114461 RchiOBHm_Chr2g0114471
rosa_laevigata	RLG00000018103 RLG00000018104
rosa_multiflora	Rmu_co8319255.1_g000001 Rmu_sc0000431.1_g000035 Rmu_sc0000431.1_g000038 Rmu_sc0003151.1_g000023 Rmu_sc0017189.1_g000003
rosa_roxburghii	Rroxscaffold_2G00130170 Rroxscaffold_2G00130180
rosa_rugosa	Rorug02G0190500 Rorug02G0190500
rosa_samantha	Rh2AG247600 Rh2BG257600 Rh2BG257700 Rh2CG251100 Rh2DG255700 Rh2DG255800
rosa_wichuraiana	Rw2G019260 Rw2G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	365
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	561
AfaI	GTAC	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	545
AgsI	TTSAA	1 cut(s)	407
AhlI	ACTAGT	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	5 cut(s)	19, 33, 219, 247, 578
AluI	AGCT	5 cut(s)	19, 33, 219, 247, 578
Alw21I	GWGCWC	3 cut(s)	249, 336, 403
AlwI	GGATC	1 cut(s)	298
Ama87I	CYCGRG	2 cut(s)	147, 335
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	1 cut(s)	561
ArsI	GACNNNNNNTTYG	2 cut(s)	435, 467
AspS9I	GGNCC	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	333
AvaI	CYCGRG	2 cut(s)	147, 335
AvaII	GGWCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	3 cut(s)	249, 336, 403
BbvI	GCAGC	1 cut(s)	587
BccI	CCATC	2 cut(s)	367, 518
BceAI	ACGGC	1 cut(s)	381
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BciT130I	CCWGG	1 cut(s)	197
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	3 cut(s)	390, 572, 584
BisI	GCNGC	1 cut(s)	576
BlsI	GCNGC	1 cut(s)	577
BmcAI	AGTACT	1 cut(s)	388
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	2 cut(s)	147, 335
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	3 cut(s)	318, 378, 412
BmrFI	CCNGG	1 cut(s)	197
BmrI	ACTGGG	1 cut(s)	311
BmuI	ACTGGG	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	218
Bsa29I	ATCGAT	1 cut(s)	437
BsaJI	CCNNGG	3 cut(s)	81, 195, 320
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	197
BseCI	ATCGAT	1 cut(s)	437
BseDI	CCNNGG	3 cut(s)	81, 195, 320
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	587
BshFI	GGCC	1 cut(s)	396
BshVI	ATCGAT	1 cut(s)	437
BsiHKAI	GWGCWC	3 cut(s)	249, 336, 403
BsiHKCI	CYCGRG	2 cut(s)	147, 335
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	2 cut(s)	134, 302
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmFI	GGGAC	2 cut(s)	134, 302
BsnI	GGCC	1 cut(s)	396
BsoBI	CYCGRG	2 cut(s)	147, 335
Bsp1286I	GDGCHC	3 cut(s)	249, 336, 403
Bsp143I	GATC	2 cut(s)	290, 438
Bsp19I	CCATGG	1 cut(s)	320
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	1 cut(s)	33
BspDI	ATCGAT	1 cut(s)	437
BspLI	GGNNCC	3 cut(s)	318, 378, 412
BspPI	GGATC	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	3 cut(s)	81, 195, 320
BssMI	GATC	2 cut(s)	290, 438
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	2 cut(s)	235, 265
BstDEI	CTNAG	2 cut(s)	29, 41
BstDSI	CCRYGG	2 cut(s)	81, 320
BstF5I	GGATG	1 cut(s)	511
BstKTI	GATC	2 cut(s)	293, 441
BstMBI	GATC	2 cut(s)	290, 438
BstMWI	GCNNNNNNNGC	1 cut(s)	575
BstNI	CCWGG	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	549
BstSCI	CCNGG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	587
BstXI	CCANNNNNNTGG	1 cut(s)	196
Bsu15I	ATCGAT	1 cut(s)	437
BsuRI	GGCC	1 cut(s)	396
BsuTUI	ATCGAT	1 cut(s)	437
BtgI	CCRYGG	2 cut(s)	81, 320
BtsCI	GGATG	1 cut(s)	511
Cfr13I	GGNCC	1 cut(s)	316
ClaI	ATCGAT	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	4 cut(s)	321, 349, 530, 546
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	2 cut(s)	29, 41
DpnI	GATC	2 cut(s)	292, 440
DpnII	GATC	2 cut(s)	290, 438
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
EaeI	YGGCCR	1 cut(s)	394
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	247
Eco88I	CYCGRG	2 cut(s)	147, 335
EcoICRI	GAGCTC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	4 cut(s)	324, 352, 533, 549
FaiI	YATR	7 cut(s)	50, 65, 322, 350, 531, 537, 547
FaqI	GGGAC	2 cut(s)	134, 302
FatI	CATG	4 cut(s)	320, 348, 529, 545
Fnu4HI	GCNGC	1 cut(s)	576
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	576
FspBI	CTAG	3 cut(s)	390, 572, 584
GluI	GCNGC	1 cut(s)	576
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	1 cut(s)	250
Hin1II	CATG	4 cut(s)	324, 352, 533, 549
HinfI	GANTC	4 cut(s)	45, 185, 338, 450
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	2 cut(s)	169, 553
Hpy188III	TCNNGA	5 cut(s)	76, 149, 178, 370, 404
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	401, 483
HpyCH4III	ACNGT	2 cut(s)	235, 265
HpyCH4V	TGCA	2 cut(s)	543, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	575
HpyF3I	CTNAG	2 cut(s)	29, 41
Hsp92II	CATG	4 cut(s)	324, 352, 533, 549
Kzo9I	GATC	2 cut(s)	290, 438
LmnI	GCTCC	2 cut(s)	252, 410
LpnPI	CCDG	9 cut(s)	102, 104, 163, 182, 209, 263, 282, 287, 292
Lsp1109I	GCAGC	1 cut(s)	587
MaeI	CTAG	3 cut(s)	390, 572, 584
MaeIII	GTNAC	2 cut(s)	339, 367
MalI	GATC	2 cut(s)	292, 440
MboI	GATC	2 cut(s)	290, 438
MboII	GAAGA	5 cut(s)	15, 141, 291, 508, 533
MhlI	GDGCHC	3 cut(s)	249, 336, 403
MluCI	AATT	4 cut(s)	132, 282, 353, 561
MlyI	GAGTC	3 cut(s)	194, 347, 459
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	4 cut(s)	249, 307, 474, 580
MslI	CAYNNNNRTG	1 cut(s)	534
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	575
NcoI	CCATGG	1 cut(s)	320
NdeII	GATC	2 cut(s)	290, 438
NlaIII	CATG	4 cut(s)	324, 352, 533, 549
NlaIV	GGNNCC	3 cut(s)	318, 378, 412
NmuCI	GTSAC	2 cut(s)	339, 367
NspI	RCATGY	1 cut(s)	549
PaeR7I	CTCGAG	2 cut(s)	147, 335
PciI	ACATGT	1 cut(s)	545
PfeI	GAWTC	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	577
PleI	GAGTC	3 cut(s)	193, 346, 458
PpsI	GAGTC	3 cut(s)	193, 346, 458
PpuMI	RGGWCCY	1 cut(s)	316
PscI	ACATGT	1 cut(s)	545
Psp124BI	GAGCTC	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	3 cut(s)	318, 378, 412
PspPI	GGNCC	1 cut(s)	316
PspPPI	RGGWCCY	1 cut(s)	316
PspXI	VCTCGAGB	1 cut(s)	335
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
RseI	CAYNNNNRTG	1 cut(s)	534
SacI	GAGCTC	1 cut(s)	249
SatI	GCNGC	1 cut(s)	576
Sau3AI	GATC	2 cut(s)	290, 438
Sau96I	GGNCC	1 cut(s)	316
ScaI	AGTACT	1 cut(s)	388
SchI	GAGTC	3 cut(s)	194, 347, 459
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	3 cut(s)	249, 336, 403
SetI	ASST	7 cut(s)	21, 35, 93, 221, 249, 318, 580
Sfr274I	CTCGAG	2 cut(s)	147, 335
SinI	GGWCC	1 cut(s)	316
SlaI	CTCGAG	2 cut(s)	147, 335
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	2 cut(s)	147, 335
SmoI	CTYRAG	2 cut(s)	147, 335
SpeI	ACTAGT	1 cut(s)	389
Sse9I	AATT	4 cut(s)	132, 282, 353, 561
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	3 cut(s)	390, 572, 584
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	2 cut(s)	235, 265
TaqI	TCGA	3 cut(s)	148, 336, 437
TasI	AATT	4 cut(s)	132, 282, 353, 561
TatI	WGTACW	1 cut(s)	386
TfiI	GAWTC	1 cut(s)	45
TseFI	GTSAC	2 cut(s)	339, 367
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	2 cut(s)	339, 367
TspDTI	ATGAA	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	1 cut(s)	561
XceI	RCATGY	1 cut(s)	549
XhoI	CTCGAG	2 cut(s)	147, 335
XspI	CTAG	3 cut(s)	390, 572, 584
ZrmI	AGTACT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.