Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007243

Physical Location & Seq

Genomic Coordinates Reverse (-)

27167483 .. 27168232

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG255700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGATAATTGCAGCTTCCTCAAAAAGAAATGCCACCTTCCCCTCCAATATCCCAGACACTATATAAGAGCCACCTTACTTGTCTTCACCACACTATCAATCAACTCTCTCCATCTCCATCTCCACCTCCAATTTCCCTCAAACACACACAAAATGGGTATTCCATTAGAGCTTTCTTCTCTTAGCTGTGAACTGAGAATCATACAAGCCAAAAACATAGAGTTCATCAAGACCACGGGAAACCTGTTCGTTAGATACTTTTTTTCTGCAGGGGACAGCAGAAGAATTAGGCTGAACACTCGAGAAATCTCCACCAAGTCTGACCACATCTGGAACAAGTCTATTTCCTTGGAGTGTAATGGAAGCGACAGCTTTGTTCGAGAAACTGTGATTTTTGAGCTCCGGTGGAGGAATACCGTGCCTGTTTTTGGAAGAATTGGGGGATCACAACTACTGGGCAGGGCAGAGGTCCCATGGAAAGAAGTGCTCGGGTCACCAAACATGGAATTGGACAAGTGGGTCACGATGGTTCCAAGAAGTACTGGTGGCCGTGCTCTTGAAGGAGTCAAACCGCCTAAACTACAGGTATCGATCAAAGTTGGAGTCCAAGCAGAAGTGGGAATGGAGAAAAGGAGGCAGAGAAGGACGAAGAAGTGGGATGAGTGTGGTTGCGAAGATGGTCATGGTCATGGTTGCACATGTGCTTATTACGAAATTTTTGCACTAGCAGCTTTGCTAGAGGCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

249

Amino Acids

28.36

Weight (kDa)

9.4

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10210 AT5G65030
fragaria_vesca	FvH4_1g20980
prunus_persica	Prupe.6G186100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114461 RchiOBHm_Chr2g0114471
rosa_laevigata	RLG00000018103 RLG00000018104
rosa_multiflora	Rmu_co8319255.1_g000001 Rmu_sc0000431.1_g000035 Rmu_sc0000431.1_g000038 Rmu_sc0003151.1_g000023 Rmu_sc0017189.1_g000003
rosa_roxburghii	Rroxscaffold_2G00130170 Rroxscaffold_2G00130180
rosa_rugosa	Rorug02G0190500 Rorug02G0190500
rosa_samantha	Rh2AG247600 Rh2BG257600 Rh2BG257700 Rh2CG251100 Rh2DG255700 Rh2DG255800
rosa_wichuraiana	Rw2G019260 Rw2G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	518
AciI	CCGC	1 cut(s)	572
AclWI	GGATC	1 cut(s)	451
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	1 cut(s)	714
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	1 cut(s)	428
AflIII	ACRYGT	1 cut(s)	698
AgsI	TTSAA	1 cut(s)	560
AluBI	AGCT	6 cut(s)	15, 172, 186, 372, 400, 731
AluI	AGCT	6 cut(s)	15, 172, 186, 372, 400, 731
Alw21I	GWGCWC	3 cut(s)	402, 489, 556
AlwI	GGATC	1 cut(s)	451
Ama87I	CYCGRG	2 cut(s)	300, 488
AoxI	GGCC	1 cut(s)	547
ApeKI	GCWGC	2 cut(s)	12, 728
ApoI	RAATTY	1 cut(s)	714
ArsI	GACNNNNNNTTYG	2 cut(s)	588, 620
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	2 cut(s)	79, 486
AvaI	CYCGRG	2 cut(s)	300, 488
AvaII	GGWCC	1 cut(s)	469
BanII	GRGCYC	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	76
Bbv12I	GWGCWC	3 cut(s)	402, 489, 556
BbvI	GCAGC	2 cut(s)	24, 740
BccI	CCATC	4 cut(s)	120, 126, 520, 671
BceAI	ACGGC	1 cut(s)	534
BcgI	CGANNNNNNTGC	2 cut(s)	701, 735
BfaI	CTAG	2 cut(s)	725, 737
BfmI	CTRYAG	2 cut(s)	267, 581
BisI	GCNGC	2 cut(s)	13, 729
BlsI	GCNGC	2 cut(s)	14, 730
BmcAI	AGTACT	1 cut(s)	541
Bme18I	GGWCC	1 cut(s)	469
BmeT110I	CYCGRG	2 cut(s)	300, 488
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	2 cut(s)	471, 531
BmrI	ACTGGG	1 cut(s)	464
BmuI	ACTGGG	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	76
Bsa29I	ATCGAT	1 cut(s)	590
BsaJI	CCNNGG	3 cut(s)	234, 348, 473
BsaWI	WCCGGW	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	2 cut(s)	459, 547
BseCI	ATCGAT	1 cut(s)	590
BseDI	CCNNGG	3 cut(s)	234, 348, 473
BseGI	GGATG	1 cut(s)	664
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	459, 547
BseXI	GCAGC	2 cut(s)	24, 740
BshFI	GGCC	1 cut(s)	549
BshVI	ATCGAT	1 cut(s)	590
BsiHKAI	GWGCWC	3 cut(s)	402, 489, 556
BsiHKCI	CYCGRG	2 cut(s)	300, 488
BsiSI	CCGG	1 cut(s)	403
BslFI	GGGAC	2 cut(s)	287, 455
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmFI	GGGAC	2 cut(s)	287, 455
BsnI	GGCC	1 cut(s)	549
BsoBI	CYCGRG	2 cut(s)	300, 488
Bsp1286I	GDGCHC	3 cut(s)	402, 489, 556
Bsp143I	GATC	2 cut(s)	443, 591
Bsp19I	CCATGG	1 cut(s)	473
BspACI	CCGC	1 cut(s)	572
BspANI	GGCC	1 cut(s)	549
BspCNI	CTCAG	1 cut(s)	186
BspDI	ATCGAT	1 cut(s)	590
BspLI	GGNNCC	2 cut(s)	471, 531
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	1 cut(s)	451
BsrI	ACTGG	2 cut(s)	459, 547
BssECI	CCNNGG	3 cut(s)	234, 348, 473
BssMI	GATC	2 cut(s)	443, 591
BssT1I	CCWWGG	2 cut(s)	348, 473
Bst4CI	ACNGT	2 cut(s)	388, 418
BstDEI	CTNAG	2 cut(s)	182, 194
BstDSI	CCRYGG	2 cut(s)	234, 473
BstEII	GGTNACC	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	664
BstKTI	GATC	2 cut(s)	446, 594
BstMBI	GATC	2 cut(s)	443, 591
BstMWI	GCNNNNNNNGC	1 cut(s)	728
BstNSI	RCATGY	1 cut(s)	702
BstPI	GGTNACC	1 cut(s)	492
BstSFI	CTRYAG	2 cut(s)	267, 581
BstV1I	GCAGC	2 cut(s)	24, 740
BstV2I	GAAGAC	1 cut(s)	76
Bsu15I	ATCGAT	1 cut(s)	590
BsuRI	GGCC	1 cut(s)	549
BsuTUI	ATCGAT	1 cut(s)	590
BtgI	CCRYGG	2 cut(s)	234, 473
BtsCI	GGATG	1 cut(s)	664
Cfr13I	GGNCC	1 cut(s)	469
ClaI	ATCGAT	1 cut(s)	590
Csp6I	GTAC	1 cut(s)	540
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	5 cut(s)	474, 502, 683, 689, 699
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	2 cut(s)	182, 194
DpnI	GATC	2 cut(s)	445, 593
DpnII	GATC	2 cut(s)	443, 591
DrdI	GACNNNNNNGTC	1 cut(s)	518
DseDI	GACNNNNNNGTC	1 cut(s)	518
EaeI	YGGCCR	1 cut(s)	547
Ecl136II	GAGCTC	1 cut(s)	400
Eco130I	CCWWGG	2 cut(s)	348, 473
Eco24I	GRGCYC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	469
Eco53kI	GAGCTC	1 cut(s)	400
Eco88I	CYCGRG	2 cut(s)	300, 488
Eco91I	GGTNACC	1 cut(s)	492
EcoICRI	GAGCTC	1 cut(s)	400
EcoO109I	RGGNCCY	1 cut(s)	469
EcoO65I	GGTNACC	1 cut(s)	492
EcoT14I	CCWWGG	2 cut(s)	348, 473
EcoT38I	GRGCYC	1 cut(s)	402
ErhI	CCWWGG	2 cut(s)	348, 473
FaeI	CATG	5 cut(s)	477, 505, 686, 692, 702
FaiI	YATR	9 cut(s)	63, 65, 203, 218, 475, 503, 684, 690, 700
FaqI	GGGAC	2 cut(s)	287, 455
FatI	CATG	5 cut(s)	473, 501, 682, 688, 698
Fnu4HI	GCNGC	2 cut(s)	13, 729
FokI	GGATG	1 cut(s)	671
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	2 cut(s)	13, 729
FspBI	CTAG	2 cut(s)	725, 737
GluI	GCNGC	2 cut(s)	13, 729
HaeIII	GGCC	1 cut(s)	549
HapII	CCGG	1 cut(s)	403
Hin1II	CATG	5 cut(s)	477, 505, 686, 692, 702
HinfI	GANTC	3 cut(s)	198, 564, 603
HpaII	CCGG	1 cut(s)	403
HphI	GGTGA	2 cut(s)	79, 486
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	6 cut(s)	229, 302, 331, 380, 523, 557
Hpy8I	GTNNAC	1 cut(s)	191
HpyAV	CCTTC	3 cut(s)	47, 554, 636
HpyCH4III	ACNGT	2 cut(s)	388, 418
HpyCH4V	TGCA	4 cut(s)	12, 269, 696, 722
HpyF10VI	GCNNNNNNNGC	1 cut(s)	728
HpyF3I	CTNAG	2 cut(s)	182, 194
Hsp92II	CATG	5 cut(s)	477, 505, 686, 692, 702
Kzo9I	GATC	2 cut(s)	443, 591
LmnI	GCTCC	1 cut(s)	405
Lsp1109I	GCAGC	2 cut(s)	24, 740
MaeI	CTAG	2 cut(s)	725, 737
MaeIII	GTNAC	2 cut(s)	492, 520
MalI	GATC	2 cut(s)	445, 593
MboI	GATC	2 cut(s)	443, 591
MboII	GAAGA	6 cut(s)	76, 168, 294, 444, 661, 686
MhlI	GDGCHC	3 cut(s)	402, 489, 556
MluCI	AATT	6 cut(s)	7, 131, 285, 435, 506, 714
MlyI	GAGTC	2 cut(s)	573, 612
MmeI	TCCRAC	1 cut(s)	580
MnlI	CCTC	8 cut(s)	29, 53, 137, 148, 402, 460, 627, 733
MslI	CAYNNNNRTG	1 cut(s)	687
MspI	CCGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	1 cut(s)	728
NcoI	CCATGG	1 cut(s)	473
NdeII	GATC	2 cut(s)	443, 591
NlaIII	CATG	5 cut(s)	477, 505, 686, 692, 702
NlaIV	GGNNCC	2 cut(s)	471, 531
NmuCI	GTSAC	2 cut(s)	492, 520
NspI	RCATGY	1 cut(s)	702
PaeR7I	CTCGAG	1 cut(s)	300
PciI	ACATGT	1 cut(s)	698
PfeI	GAWTC	1 cut(s)	198
PkrI	GCNGC	2 cut(s)	14, 730
PleI	GAGTC	2 cut(s)	572, 611
PpsI	GAGTC	2 cut(s)	572, 611
PpuMI	RGGWCCY	1 cut(s)	469
PscI	ACATGT	1 cut(s)	698
Psp124BI	GAGCTC	1 cut(s)	402
Psp5II	RGGWCCY	1 cut(s)	469
PspEI	GGTNACC	1 cut(s)	492
PspN4I	GGNNCC	2 cut(s)	471, 531
PspPI	GGNCC	1 cut(s)	469
PspPPI	RGGWCCY	1 cut(s)	469
PstI	CTGCAG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
RseI	CAYNNNNRTG	1 cut(s)	687
SacI	GAGCTC	1 cut(s)	402
SatI	GCNGC	2 cut(s)	13, 729
Sau3AI	GATC	2 cut(s)	443, 591
Sau96I	GGNCC	1 cut(s)	469
ScaI	AGTACT	1 cut(s)	541
SchI	GAGTC	2 cut(s)	573, 612
SduI	GDGCHC	3 cut(s)	402, 489, 556
SfcI	CTRYAG	2 cut(s)	267, 581
Sfr274I	CTCGAG	1 cut(s)	300
SinI	GGWCC	1 cut(s)	469
SlaI	CTCGAG	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	687
SmlI	CTYRAG	1 cut(s)	300
SmoI	CTYRAG	1 cut(s)	300
Sse9I	AATT	6 cut(s)	7, 131, 285, 435, 506, 714
SsiI	CCGC	1 cut(s)	572
SspMI	CTAG	2 cut(s)	725, 737
SstI	GAGCTC	1 cut(s)	402
StyI	CCWWGG	2 cut(s)	348, 473
TaaI	ACNGT	2 cut(s)	388, 418
TaqI	TCGA	3 cut(s)	301, 379, 590
TasI	AATT	6 cut(s)	7, 131, 285, 435, 506, 714
TatI	WGTACW	1 cut(s)	539
TfiI	GAWTC	1 cut(s)	198
TseFI	GTSAC	2 cut(s)	492, 520
TseI	GCWGC	2 cut(s)	12, 728
Tsp45I	GTSAC	2 cut(s)	492, 520
TspDTI	ATGAA	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	1 cut(s)	714
XceI	RCATGY	1 cut(s)	702
XhoI	CTCGAG	1 cut(s)	300
XspI	CTAG	2 cut(s)	725, 737
ZrmI	AGTACT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.