Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007243

Physical Location & Seq

Genomic Coordinates Reverse (-)

25975697 .. 25976356

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGTGTTATGGAGAAGAAACTTCGTTCACTAAAATGCCAAGTGAGAATAGTAGAAGCAAGAAACGTAGAGATCAAGTCACAAGCTAGTACTCTGTTCGTTAGATTCTATCTCTCTGCAGGACACAACAGAAAGATCGAAGTAAACACGAGAGAGCTCTCTTCGAAATCAGACCAACTCATGTGGGATCAATCTTTTGGTCTGGAGTGTCAAGGGGACGAAGCAGCTGTCAAAGAATTGAAGCAACAGAGAGTCGTTTTTGAACTACGGAGGAAGAAAATATCGACGTTTCTTAGGAAATCATCTAAATCTGAGGTTGTTGGGAGAGGAGAGGTTTCTTGGGAATCGGTTTTCGAGTCGCCAGGCATGGAGATTGAGAGACTTGTGGTGATGGGTGAATCCAAAAATTGGGTTTTGGAAGATGAAAGACCTTTGTTGTTGAAGATAGCTTTAAAGGTCCAAGCTTTAGAAGAAATGGAGAAGATGCTGATCAAGAATGACAAGAAAACAGAGAAGCTTTGTTGTGTGTGTAGTAGTAGAGATTGCGGAAGCTGTAGTTGCTTAGATTATGAGGCTTTTGCTTTAGTTTGTGCTTTAGATTGTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

202

Amino Acids

23.1

Weight (kDa)

8.29

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10210 AT5G65030
fragaria_vesca	FvH4_1g20980
prunus_persica	Prupe.6G186100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114461 RchiOBHm_Chr2g0114471
rosa_laevigata	RLG00000018103 RLG00000018104
rosa_multiflora	Rmu_co8319255.1_g000001 Rmu_sc0000431.1_g000035 Rmu_sc0000431.1_g000038 Rmu_sc0003151.1_g000023 Rmu_sc0017189.1_g000003
rosa_roxburghii	Rroxscaffold_2G00130170 Rroxscaffold_2G00130180
rosa_rugosa	Rorug02G0190500 Rorug02G0190500
rosa_samantha	Rh2AG247600 Rh2BG257600 Rh2BG257700 Rh2CG251100 Rh2DG255700 Rh2DG255800
rosa_wichuraiana	Rw2G019260 Rw2G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	408
AciI	CCGC	1 cut(s)	546
AclWI	GGATC	1 cut(s)	195
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	3 cut(s)	241, 263, 442
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	7 cut(s)	86, 157, 227, 449, 464, 517, 552
AluI	AGCT	7 cut(s)	86, 157, 227, 449, 464, 517, 552
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	224
ArsI	GACNNNNNNTTYG	2 cut(s)	213, 245
AspS9I	GGNCC	1 cut(s)	457
AsuHPI	GGTGA	2 cut(s)	400, 407
AsuII	TTCGAA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	1 cut(s)	385
BciT130I	CCWGG	1 cut(s)	363
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	2 cut(s)	117, 553
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BmcAI	AGTACT	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	457
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	474
BpmI	CTGGAG	1 cut(s)	224
Bpu14I	TTCGAA	1 cut(s)	164
BsaBI	GATNNNNATC	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse8I	GATNNNNATC	1 cut(s)	488
BseBI	CCWGG	1 cut(s)	363
BseJI	GATNNNNATC	1 cut(s)	488
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	4 cut(s)	72, 135, 187, 489
BspACI	CCGC	1 cut(s)	546
BspCNI	CTCAG	1 cut(s)	304
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	195
BspT104I	TTCGAA	1 cut(s)	164
BssMI	GATC	4 cut(s)	72, 135, 187, 489
BssSI	CACGAG	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	363
Bst6I	CTCTTC	1 cut(s)	166
BstBI	TTCGAA	1 cut(s)	164
BstDEI	CTNAG	3 cut(s)	293, 312, 562
BstKTI	GATC	4 cut(s)	75, 138, 190, 492
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	4 cut(s)	72, 135, 187, 489
BstMWI	GCNNNNNNNGC	1 cut(s)	558
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	2 cut(s)	117, 553
BstV1I	GCAGC	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	457
Csp6I	GTAC	1 cut(s)	90
CspCI	CAANNNNNGTGG	2 cut(s)	164, 199
CviAII	CATG	2 cut(s)	181, 367
CviJI	RGCY	8 cut(s)	86, 157, 227, 449, 464, 517, 552, 575
CviKI_1	RGCY	8 cut(s)	86, 157, 227, 449, 464, 517, 552, 575
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	3 cut(s)	293, 312, 562
DpnI	GATC	4 cut(s)	74, 137, 189, 491
DpnII	GATC	4 cut(s)	72, 135, 187, 489
DraI	TTTAAA	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	457
Eco53kI	GAGCTC	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	2 cut(s)	184, 370
FaiI	YATR	4 cut(s)	11, 182, 368, 570
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	2 cut(s)	180, 366
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	1 cut(s)	225
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	224
Hin1II	CATG	2 cut(s)	184, 370
HindIII	AAGCTT	2 cut(s)	462, 515
HinfI	GANTC	5 cut(s)	105, 252, 344, 356, 398
HphI	GGTGA	2 cut(s)	400, 407
Hpy166II	GTNNAC	2 cut(s)	29, 145
Hpy188I	TCNGA	2 cut(s)	172, 313
Hpy188III	TCNNGA	2 cut(s)	203, 493
Hpy8I	GTNNAC	2 cut(s)	29, 145
Hpy99I	CGWCG	1 cut(s)	289
HpyCH4IV	ACGT	2 cut(s)	66, 287
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	558
HpyF3I	CTNAG	3 cut(s)	293, 312, 562
HpySE526I	ACGT	2 cut(s)	66, 287
Hsp92II	CATG	2 cut(s)	184, 370
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	4 cut(s)	72, 135, 187, 489
LpnPI	CCDG	4 cut(s)	105, 188, 348, 375
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	2 cut(s)	66, 287
MaeIII	GTNAC	1 cut(s)	78
MalI	GATC	4 cut(s)	74, 137, 189, 491
MboI	GATC	4 cut(s)	72, 135, 187, 489
MboII	GAAGA	7 cut(s)	28, 153, 286, 431, 454, 482, 493
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	2 cut(s)	236, 406
MlyI	GAGTC	2 cut(s)	261, 365
MnlI	CCTC	5 cut(s)	264, 307, 320, 325, 565
MseI	TTAA	2 cut(s)	452, 607
MslI	CAYNNNNRTG	1 cut(s)	34
MspA1I	CMGCKG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	558
NdeII	GATC	4 cut(s)	72, 135, 187, 489
NlaIII	CATG	2 cut(s)	184, 370
NmuCI	GTSAC	1 cut(s)	78
NspV	TTCGAA	1 cut(s)	164
PfeI	GAWTC	3 cut(s)	105, 344, 398
PflMI	CCANNNNNTGG	1 cut(s)	408
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	2 cut(s)	260, 364
PpsI	GAGTC	2 cut(s)	260, 364
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspPI	GGNCC	1 cut(s)	457
PstI	CTGCAG	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	452, 607
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	4 cut(s)	72, 135, 187, 489
Sau96I	GGNCC	1 cut(s)	457
ScaI	AGTACT	1 cut(s)	91
SchI	GAGTC	2 cut(s)	261, 365
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	1 cut(s)	474
SfcI	CTRYAG	2 cut(s)	117, 553
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	34
Sse9I	AATT	2 cut(s)	236, 406
SsiI	CCGC	1 cut(s)	546
SspMI	CTAG	1 cut(s)	87
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	361
TaiI	ACGT	2 cut(s)	69, 290
TaqI	TCGA	4 cut(s)	138, 164, 284, 354
TasI	AATT	2 cut(s)	236, 406
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	3 cut(s)	105, 344, 398
Tru1I	TTAA	2 cut(s)	452, 607
Tru9I	TTAA	2 cut(s)	452, 607
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	1 cut(s)	438
TspGWI	ACGGA	1 cut(s)	283
Van91I	CCANNNNNTGG	1 cut(s)	408
VpaK11BI	GGWCC	1 cut(s)	457
XspI	CTAG	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.