Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007243

Physical Location & Seq

Genomic Coordinates Reverse (-)

66289121 .. 66289723

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00130180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGTATTCCATTAGAGCTTTCTTCCCTTAGCTGTGGACTGAGAATCATACAAGCCAAAAACATAGAGTTCATCAAGACCACGGGAAACCTGTTCGTTAGATACTATCTTTCTGCAGGGGACAGCAAAAAAATTAGGCTGAACACTCGAGAAATCTCCACCAAGTCTGACCACATCTGGAACGAGTCCATTTCCCTGGAGTGTAATCGAAGCGACAGCTTTGTGCGAGAAACTGTGGTTTTTGAGCTCCGGTGGAGGAACACCGTGCCTGTTTTTGGAAGAATTGGGGGATCACAACTACTGGGCAGGGCAGAGGTCCCATGGAAAGAAGTGCTCGAGTCACCTAACATGGAATTGGACAAGTGGGTCACGATGGTTCCAAGAAGTACTAGTGGCGGTGCTATTGAAGGCGTCAAGCCGCCTAAACTACAGGTATCGATCAAAGTTGGAGTCCAAGCAGAAGTGGGAATGGAGAAAAGGAGGCTGAGAAGGACGAAGAAGTGGGATGAGTGTGGTTGCGAAGATGGTCATGGTCATGGTTATGGTTGCACATGTTCTGATTACGAAATTTTTGCTCTAGCAGCTTTGCTAGAGGCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

200

Amino Acids

22.44

Weight (kDa)

8.52

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10210 AT5G65030
fragaria_vesca	FvH4_1g20980
prunus_persica	Prupe.6G186100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114461 RchiOBHm_Chr2g0114471
rosa_laevigata	RLG00000018103 RLG00000018104
rosa_multiflora	Rmu_co8319255.1_g000001 Rmu_sc0000431.1_g000035 Rmu_sc0000431.1_g000038 Rmu_sc0003151.1_g000023 Rmu_sc0017189.1_g000003
rosa_roxburghii	Rroxscaffold_2G00130170 Rroxscaffold_2G00130180
rosa_rugosa	Rorug02G0190500 Rorug02G0190500
rosa_samantha	Rh2AG247600 Rh2BG257600 Rh2BG257700 Rh2CG251100 Rh2DG255700 Rh2DG255800
rosa_wichuraiana	Rw2G019260 Rw2G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	365
AciI	CCGC	2 cut(s)	396, 419
AclWI	GGATC	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	567
AcyI	GRCGYC	1 cut(s)	411
AfaI	GTAC	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	551
AgsI	TTSAA	1 cut(s)	407
AhlI	ACTAGT	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	5 cut(s)	19, 33, 219, 247, 584
AluI	AGCT	5 cut(s)	19, 33, 219, 247, 584
Alw21I	GWGCWC	2 cut(s)	249, 336
AlwI	GGATC	1 cut(s)	298
Ama87I	CYCGRG	2 cut(s)	147, 335
ApeKI	GCWGC	1 cut(s)	581
ApoI	RAATTY	1 cut(s)	567
ArsI	GACNNNNNNTTYG	2 cut(s)	435, 467
AspS9I	GGNCC	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	333
AvaI	CYCGRG	2 cut(s)	147, 335
AvaII	GGWCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	2 cut(s)	249, 336
BbvI	GCAGC	1 cut(s)	593
BccI	CCATC	2 cut(s)	367, 518
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BciT130I	CCWGG	1 cut(s)	197
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	3 cut(s)	390, 578, 590
BfmI	CTRYAG	2 cut(s)	114, 428
BisI	GCNGC	2 cut(s)	419, 582
BlsI	GCNGC	2 cut(s)	420, 583
BmcAI	AGTACT	1 cut(s)	388
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	2 cut(s)	147, 335
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	2 cut(s)	318, 378
BmrFI	CCNGG	1 cut(s)	197
BmrI	ACTGGG	1 cut(s)	311
BmuI	ACTGGG	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	29
Bsa29I	ATCGAT	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	411
BsaJI	CCNNGG	3 cut(s)	81, 195, 320
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	197
BseCI	ATCGAT	1 cut(s)	437
BseDI	CCNNGG	3 cut(s)	81, 195, 320
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	2 cut(s)	32, 476
BseNI	ACTGG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	593
BshVI	ATCGAT	1 cut(s)	437
BsiHKAI	GWGCWC	2 cut(s)	249, 336
BsiHKCI	CYCGRG	2 cut(s)	147, 335
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	2 cut(s)	134, 302
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmFI	GGGAC	2 cut(s)	134, 302
BsoBI	CYCGRG	2 cut(s)	147, 335
Bsp1286I	GDGCHC	2 cut(s)	249, 336
Bsp143I	GATC	2 cut(s)	290, 438
Bsp19I	CCATGG	1 cut(s)	320
BspACI	CCGC	2 cut(s)	396, 419
BspCNI	CTCAG	2 cut(s)	33, 477
BspDI	ATCGAT	1 cut(s)	437
BspLI	GGNNCC	2 cut(s)	318, 378
BspMAI	CTGCAG	1 cut(s)	118
BspPI	GGATC	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	3 cut(s)	81, 195, 320
BssMI	GATC	2 cut(s)	290, 438
BssNI	GRCGYC	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	2 cut(s)	235, 265
BstACI	GRCGYC	1 cut(s)	411
BstDEI	CTNAG	3 cut(s)	29, 41, 485
BstDSI	CCRYGG	2 cut(s)	81, 320
BstF5I	GGATG	1 cut(s)	511
BstKTI	GATC	2 cut(s)	293, 441
BstMBI	GATC	2 cut(s)	290, 438
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstNI	CCWGG	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	555
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	2 cut(s)	114, 428
BstV1I	GCAGC	1 cut(s)	593
BstXI	CCANNNNNNTGG	1 cut(s)	196
Bsu15I	ATCGAT	1 cut(s)	437
BsuTUI	ATCGAT	1 cut(s)	437
BtgI	CCRYGG	2 cut(s)	81, 320
BtsCI	GGATG	1 cut(s)	511
Cfr13I	GGNCC	1 cut(s)	316
ClaI	ATCGAT	1 cut(s)	437
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	5 cut(s)	321, 349, 530, 536, 552
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	3 cut(s)	29, 41, 485
DpnI	GATC	2 cut(s)	292, 440
DpnII	GATC	2 cut(s)	290, 438
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	247
Eco88I	CYCGRG	2 cut(s)	147, 335
EcoICRI	GAGCTC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	5 cut(s)	324, 352, 533, 539, 555
FaiI	YATR	8 cut(s)	50, 65, 322, 350, 531, 537, 543, 553
FaqI	GGGAC	2 cut(s)	134, 302
FatI	CATG	5 cut(s)	320, 348, 529, 535, 551
Fnu4HI	GCNGC	2 cut(s)	419, 582
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	2 cut(s)	419, 582
FspBI	CTAG	3 cut(s)	390, 578, 590
GluI	GCNGC	2 cut(s)	419, 582
GsuI	CTGGAG	1 cut(s)	218
HapII	CCGG	1 cut(s)	250
HgaI	GACGC	1 cut(s)	400
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	5 cut(s)	324, 352, 533, 539, 555
HinfI	GANTC	4 cut(s)	45, 185, 338, 450
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	2 cut(s)	169, 559
Hpy188III	TCNNGA	4 cut(s)	76, 149, 178, 370
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	401, 483
HpyCH4III	ACNGT	2 cut(s)	235, 265
HpyCH4V	TGCA	2 cut(s)	116, 549
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	3 cut(s)	29, 41, 485
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	5 cut(s)	324, 352, 533, 539, 555
Kzo9I	GATC	2 cut(s)	290, 438
LmnI	GCTCC	1 cut(s)	252
Lsp1109I	GCAGC	1 cut(s)	593
MaeI	CTAG	3 cut(s)	390, 578, 590
MaeIII	GTNAC	2 cut(s)	339, 367
MalI	GATC	2 cut(s)	292, 440
MboI	GATC	2 cut(s)	290, 438
MboII	GAAGA	4 cut(s)	15, 291, 508, 533
MhlI	GDGCHC	2 cut(s)	249, 336
MluCI	AATT	4 cut(s)	132, 282, 353, 567
MlyI	GAGTC	3 cut(s)	194, 347, 459
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	4 cut(s)	249, 307, 474, 586
MslI	CAYNNNNRTG	2 cut(s)	534, 540
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	581
NcoI	CCATGG	1 cut(s)	320
NdeII	GATC	2 cut(s)	290, 438
NlaIII	CATG	5 cut(s)	324, 352, 533, 539, 555
NlaIV	GGNNCC	2 cut(s)	318, 378
NmuCI	GTSAC	2 cut(s)	339, 367
NspI	RCATGY	1 cut(s)	555
PaeR7I	CTCGAG	2 cut(s)	147, 335
PciI	ACATGT	1 cut(s)	551
PfeI	GAWTC	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	420, 583
PleI	GAGTC	3 cut(s)	193, 346, 458
PpsI	GAGTC	3 cut(s)	193, 346, 458
PpuMI	RGGWCCY	1 cut(s)	316
PscI	ACATGT	1 cut(s)	551
Psp124BI	GAGCTC	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	318, 378
PspPI	GGNCC	1 cut(s)	316
PspPPI	RGGWCCY	1 cut(s)	316
PspXI	VCTCGAGB	1 cut(s)	335
PstI	CTGCAG	1 cut(s)	118
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
RseI	CAYNNNNRTG	2 cut(s)	534, 540
SacI	GAGCTC	1 cut(s)	249
SatI	GCNGC	2 cut(s)	419, 582
Sau3AI	GATC	2 cut(s)	290, 438
Sau96I	GGNCC	1 cut(s)	316
ScaI	AGTACT	1 cut(s)	388
SchI	GAGTC	3 cut(s)	194, 347, 459
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	2 cut(s)	249, 336
SetI	ASST	9 cut(s)	21, 35, 93, 221, 249, 318, 346, 435, 586
SfcI	CTRYAG	2 cut(s)	114, 428
Sfr274I	CTCGAG	2 cut(s)	147, 335
SinI	GGWCC	1 cut(s)	316
SlaI	CTCGAG	2 cut(s)	147, 335
SmiMI	CAYNNNNRTG	2 cut(s)	534, 540
SmlI	CTYRAG	2 cut(s)	147, 335
SmoI	CTYRAG	2 cut(s)	147, 335
SpeI	ACTAGT	1 cut(s)	389
Sse9I	AATT	4 cut(s)	132, 282, 353, 567
SsiI	CCGC	2 cut(s)	396, 419
SspMI	CTAG	3 cut(s)	390, 578, 590
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	2 cut(s)	235, 265
TaqI	TCGA	4 cut(s)	148, 208, 336, 437
TasI	AATT	4 cut(s)	132, 282, 353, 567
TatI	WGTACW	1 cut(s)	386
TauI	GCSGC	1 cut(s)	421
TfiI	GAWTC	1 cut(s)	45
TseFI	GTSAC	2 cut(s)	339, 367
TseI	GCWGC	1 cut(s)	581
Tsp45I	GTSAC	2 cut(s)	339, 367
TspDTI	ATGAA	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	1 cut(s)	567
XceI	RCATGY	1 cut(s)	555
XhoI	CTCGAG	2 cut(s)	147, 335
XspI	CTAG	3 cut(s)	390, 578, 590
ZrmI	AGTACT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.