Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007384

Physical Location & Seq

Genomic Coordinates Reverse (-)

3319870 .. 3322935

Gene Structure 3066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGCTGTTGAAGATAACAAGAACAGTGAAAGCAAAAATCATCAAGAGGTAGAGCTTCATAGGAACGACTTAGGCCTCGAAGATTCATCATCGCCAAGAGGTGTTCTCGGAATGGTTTCAGATTCCGACAACAGCAGCAGTAGTTGCAGCTCTTGTTCCTCTGATGATAAATCATCATCAACATCGTCACCATTTTCAAATACTACTAAAACCGTTTCGTCTTCTCACCATGGTCTTCAATGGAACAAAATGATTGAATCTATCAAGAAGAAGTCCATGAGACGATTCTCTGTCATTCCTCTTCTTGCAAGTTACGAACTCACCCGTAAAAACTTGCGTCGTAAGCAACCTAAGCTAACTCCCTCTGAGAGTGCTTTCACCTGTGAAGCCTTCTTTATGGCTAAACCCTCTTGGAGAAACTTCACTTACGAAGAGCTCGCTGTAGCCACCGATTATTTCAATCCTGAGAACATGATTGGTAAGGGAGGACATGCGGAGGTATACAAAGGGGTTTTGATTAATGGTGAGACGGTGGCGATTAAGAAGCTGATGAGTCACGCCAAGGAAGAAGAAGAAAGAGTGAGCGATTTCCTTTCAGAGCTCGGTATAATCGCACATGTAAACCACCCAAACGCAGCTAGGCTTCGCGGTTTCAGCAGTGATCGCGGTTTGCATTTTGTTCTTGAGTACGCTCCCTATGGCAGCCTCGCTTCTATGCTTTTTGGATCAGAGGAATGTCTAGAGTGGAAGATAAGGTATAAAGTGGCTCTAGGTATAGCTGATGGTCTGAGTTATCTTCATAATGCTTGTCCAAGAAGGATCATTCACCGTGACATCAAAGCTTCTAACATATTGCTCAACCACGATTACGAAGCTCAGATTTCAGATTTCGGACTTGCAAAATGGCTCCCAGAGAACTGGCCTCACCATGTTGTATTCCCCATTGAAGGAACATTCGGATATCTAGCTCCAGAGTATTTCATGCACGGCATTGTTGATGAGAAGATTGATGTGTTTGCCTTTGGAGTATTGCTTCTAGAGATCATAACCAGTCGCCGAGCTGTTGATACAGCAAGCAGGCAGAGCATTGTTGCATGGGCAAAACCTTTTCTTGAGAAAAATAGCATGGAGGACATTGTGGATCCTCGGCTAGGAAATATGTTTAATCCAACAGAGATGCAACGAGTGATGCTAACAGCTTCAATGTGTGTACATCATATTGCCGCAATGCGACCTGACATGACTCGGTTGGTGCAGCTGTTACGTGGAGAAGACGGACCAGCTGAGCTACAGCAGAAGGCAGGTGAAAGAACAATGAGCGTGAACGCTTGTGATCTACAAGATCACACCTCTTCCTCATACCTCAACGAACTCCGCCGCCATAGGCAACTCTTAATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009623 GO:0009719 GO:0009723 GO:0009725 GO:0009814 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0032870 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

467

Amino Acids

52.65

Weight (kDa)

6.27

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	155 - 362	1.5e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	156 - 420	1.3e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10520 AT5G10520 AT5G65530
fragaria_vesca	FvH4_1g19500 FvH4_1g19500 FvH4_1g19500 FvH4_1g19500 FvH4_1g19500
malus_domestica	MD01G1040800.v1.1 MD15G1310700.v1.1
prunus_persica	Prupe.6G203200_v2.0.a1 Prupe.6G203200_v2.0.a1
pyrus_communis	pycom01g06840 pycom15g27430
rosa_chinensis	RchiOBHm_Chr2g0111001
rosa_laevigata	RLG00000017857
rosa_multiflora	Rmu_co8060254.1_g000001 Rmu_sc0003994.1_g000009
rosa_roxburghii	Rroxscaffold_2G00132750
rosa_rugosa	Rorug02G0170500
rosa_samantha	Rh2AG222500 Rh2BG234500 Rh2CG225800 Rh2DG230400
rosa_wichuraiana	Rw2G017190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1292
Acc36I	ACCTGC	1 cut(s)	1292
AccI	GTMKAC	1 cut(s)	501
AccII	CGCG	2 cut(s)	648, 666
AciI	CCGC	6 cut(s)	494, 648, 666, 1224, 1375, 1378
AclWI	GGATC	4 cut(s)	733, 827, 1136, 1149
AfaI	GTAC	2 cut(s)	689, 1212
AfiI	CCNNNNNNNGG	2 cut(s)	947, 1151
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	7 cut(s)	11, 198, 239, 257, 460, 947, 1203
Alw21I	GWGCWC	2 cut(s)	438, 603
Alw26I	GTCTC	2 cut(s)	274, 521
AlwI	GGATC	4 cut(s)	733, 827, 1136, 1149
AoxI	GGCC	2 cut(s)	73, 920
ApeKI	GCWGC	5 cut(s)	135, 147, 635, 702, 1255
AseI	ATTAAT	1 cut(s)	519
Asp700I	GAANNNNTTC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	1277
AsuHPI	GGTGA	8 cut(s)	180, 218, 313, 370, 536, 818, 917, 1316
AvaII	GGWCC	1 cut(s)	1277
BamHI	GGATCC	1 cut(s)	1141
BanII	GRGCYC	2 cut(s)	438, 603
BbsI	GAAGAC	3 cut(s)	213, 227, 1278
Bbv12I	GWGCWC	2 cut(s)	438, 603
BbvI	GCAGC	5 cut(s)	147, 159, 647, 714, 1267
BccI	CCATC	1 cut(s)	776
BceAI	ACGGC	1 cut(s)	1003
BcoDI	GTCTC	2 cut(s)	274, 521
BfaI	CTAG	6 cut(s)	639, 740, 770, 965, 1037, 1151
BfmI	CTRYAG	2 cut(s)	441, 1289
BfuAI	ACCTGC	1 cut(s)	1292
BisI	GCNGC	7 cut(s)	136, 148, 636, 703, 1224, 1256, 1378
BlpI	GCTNAGC	1 cut(s)	1284
BlsI	GCNGC	7 cut(s)	137, 149, 637, 704, 1225, 1257, 1379
Bme18I	GGWCC	1 cut(s)	1277
BmgT120I	GGNCC	1 cut(s)	1277
BmiI	GGNNCC	2 cut(s)	908, 1143
BmsI	GCATC	2 cut(s)	1167, 1179
BpiI	GAAGAC	3 cut(s)	213, 227, 1278
BplI	GAGNNNNNCTC	2 cut(s)	90, 122
BpmI	CTGGAG	1 cut(s)	954
Bpu10I	CCTNAGC	1 cut(s)	351
Bpu1102I	GCTNAGC	1 cut(s)	1284
BpuEI	CTTGAG	2 cut(s)	704, 1133
BsaAI	YACGTR	1 cut(s)	1265
BsaJI	CCNNGG	3 cut(s)	229, 561, 1145
Bsc4I	CCNNNNNNNGG	2 cut(s)	947, 1151
Bse1I	ACTGG	2 cut(s)	923, 1050
Bse3DI	GCAATG	1 cut(s)	1233
BseDI	CCNNGG	3 cut(s)	229, 561, 1145
BseLI	CCNNNNNNNGG	2 cut(s)	947, 1151
BseMI	GCAATG	1 cut(s)	1233
BseMII	CTCAG	5 cut(s)	357, 456, 779, 890, 1275
BseNI	ACTGG	2 cut(s)	923, 1050
BseXI	GCAGC	5 cut(s)	147, 159, 647, 714, 1267
BsgI	GTGCAG	1 cut(s)	1274
Bsh1236I	CGCG	2 cut(s)	648, 666
BshFI	GGCC	2 cut(s)	75, 922
BsiHKAI	GWGCWC	2 cut(s)	438, 603
BslI	CCNNNNNNNGG	2 cut(s)	947, 1151
BsmAI	GTCTC	2 cut(s)	274, 521
BsmBI	CGTCTC	2 cut(s)	274, 521
BsnI	GGCC	2 cut(s)	75, 922
Bsp1286I	GDGCHC	2 cut(s)	438, 603
Bsp1407I	TGTACA	1 cut(s)	1210
Bsp143I	GATC	7 cut(s)	661, 725, 819, 1041, 1141, 1333, 1342
Bsp1720I	GCTNAGC	1 cut(s)	1284
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	6 cut(s)	494, 648, 666, 1224, 1375, 1378
BspANI	GGCC	2 cut(s)	75, 922
BspCNI	CTCAG	5 cut(s)	358, 457, 780, 889, 1276
BspFNI	CGCG	2 cut(s)	648, 666
BspLI	GGNNCC	2 cut(s)	908, 1143
BspMI	ACCTGC	1 cut(s)	1292
BspPI	GGATC	4 cut(s)	733, 827, 1136, 1149
BspQI	GCTCTTC	1 cut(s)	426
BsrDI	GCAATG	1 cut(s)	1233
BsrGI	TGTACA	1 cut(s)	1210
BsrI	ACTGG	2 cut(s)	923, 1050
BssECI	CCNNGG	3 cut(s)	229, 561, 1145
BssMI	GATC	7 cut(s)	661, 725, 819, 1041, 1141, 1333, 1342
BssNAI	GTATAC	1 cut(s)	502
BssT1I	CCWWGG	2 cut(s)	229, 561
Bst1107I	GTATAC	1 cut(s)	502
Bst4CI	ACNGT	4 cut(s)	26, 214, 532, 830
Bst6I	CTCTTC	3 cut(s)	306, 426, 1357
BstAPI	GCANNNNNTGC	1 cut(s)	144
BstAUI	TGTACA	1 cut(s)	1210
BstBAI	YACGTR	1 cut(s)	1265
BstC8I	GCNNGC	3 cut(s)	438, 1075, 1079
BstDEI	CTNAG	7 cut(s)	70, 351, 366, 465, 788, 876, 1284
BstDSI	CCRYGG	1 cut(s)	229
BstENI	CCTNNNNNAGG	1 cut(s)	1149
BstFNI	CGCG	2 cut(s)	648, 666
BstKTI	GATC	7 cut(s)	664, 728, 822, 1044, 1144, 1336, 1345
BstMAI	GTCTC	2 cut(s)	274, 521
BstMBI	GATC	7 cut(s)	661, 725, 819, 1041, 1141, 1333, 1342
BstMWI	GCNNNNNNNGC	6 cut(s)	144, 343, 352, 654, 663, 1083
BstNSI	RCATGY	2 cut(s)	494, 620
BstSFI	CTRYAG	2 cut(s)	441, 1289
BstUI	CGCG	2 cut(s)	648, 666
BstV1I	GCAGC	5 cut(s)	147, 159, 647, 714, 1267
BstV2I	GAAGAC	3 cut(s)	213, 227, 1278
BstX2I	RGATCY	1 cut(s)	1141
BstXI	CCANNNNNNTGG	1 cut(s)	918
BstYI	RGATCY	1 cut(s)	1141
BstZ17I	GTATAC	1 cut(s)	502
BsuRI	GGCC	2 cut(s)	75, 922
BtgI	CCRYGG	1 cut(s)	229
BtgZI	GCGATG	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	664
BtsIMutI	CAGTG	2 cut(s)	31, 664
BveI	ACCTGC	1 cut(s)	1292
Cac8I	GCNNGC	3 cut(s)	438, 1075, 1079
Cfr13I	GGNCC	1 cut(s)	1277
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	688, 1211
CviQI	GTAC	2 cut(s)	688, 1211
DdeI	CTNAG	7 cut(s)	70, 351, 366, 465, 788, 876, 1284
DpnI	GATC	7 cut(s)	663, 727, 821, 1043, 1143, 1335, 1344
DpnII	GATC	7 cut(s)	661, 725, 819, 1041, 1141, 1333, 1342
Eam1104I	CTCTTC	3 cut(s)	306, 426, 1357
EarI	CTCTTC	3 cut(s)	306, 426, 1357
EciI	GGCGGA	1 cut(s)	1364
Ecl136II	GAGCTC	2 cut(s)	436, 601
Eco130I	CCWWGG	2 cut(s)	229, 561
Eco147I	AGGCCT	1 cut(s)	75
Eco24I	GRGCYC	2 cut(s)	438, 603
Eco32I	GATATC	1 cut(s)	962
Eco47I	GGWCC	1 cut(s)	1277
Eco53kI	GAGCTC	2 cut(s)	436, 601
EcoICRI	GAGCTC	2 cut(s)	436, 601
EcoNI	CCTNNNNNAGG	1 cut(s)	1149
EcoRV	GATATC	1 cut(s)	962
EcoT14I	CCWWGG	2 cut(s)	229, 561
EcoT38I	GRGCYC	2 cut(s)	438, 603
ErhI	CCWWGG	2 cut(s)	229, 561
Esp3I	CGTCTC	2 cut(s)	274, 521
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	7 cut(s)	136, 148, 636, 703, 1224, 1256, 1378
FriOI	GRGCYC	2 cut(s)	438, 603
Fsp4HI	GCNGC	7 cut(s)	136, 148, 636, 703, 1224, 1256, 1378
FspBI	CTAG	6 cut(s)	639, 740, 770, 965, 1037, 1151
GluI	GCNGC	7 cut(s)	136, 148, 636, 703, 1224, 1256, 1378
GsuI	CTGGAG	1 cut(s)	954
HaeIII	GGCC	2 cut(s)	75, 922
HgaI	GACGC	1 cut(s)	326
HindIII	AAGCTT	1 cut(s)	840
HinfI	GANTC	6 cut(s)	83, 122, 257, 285, 553, 1243
HphI	GGTGA	8 cut(s)	180, 218, 313, 370, 536, 818, 917, 1316
Hpy166II	GTNNAC	4 cut(s)	502, 622, 1211, 1324
Hpy188III	TCNNGA	8 cut(s)	44, 265, 464, 683, 740, 971, 1037, 1112
Hpy8I	GTNNAC	4 cut(s)	502, 622, 1211, 1324
Hpy99I	CGWCG	1 cut(s)	342
HpyAV	CCTTC	4 cut(s)	400, 810, 941, 1291
HpyCH4III	ACNGT	4 cut(s)	26, 214, 532, 830
HpyCH4IV	ACGT	1 cut(s)	1264
HpyCH4V	TGCA	8 cut(s)	147, 308, 673, 899, 985, 1094, 1180, 1255
HpyF10VI	GCNNNNNNNGC	6 cut(s)	144, 343, 352, 654, 663, 1083
HpyF3I	CTNAG	7 cut(s)	70, 351, 366, 465, 788, 876, 1284
HpySE526I	ACGT	1 cut(s)	1264
Kzo9I	GATC	7 cut(s)	661, 725, 819, 1041, 1141, 1333, 1342
LguI	GCTCTTC	1 cut(s)	426
LmnI	GCTCC	3 cut(s)	697, 912, 973
Lsp1109I	GCAGC	5 cut(s)	147, 159, 647, 714, 1267
LweI	GCATC	2 cut(s)	1167, 1179
MaeI	CTAG	6 cut(s)	639, 740, 770, 965, 1037, 1151
MaeII	ACGT	1 cut(s)	1264
MaeIII	GTNAC	5 cut(s)	186, 311, 554, 830, 1260
MalI	GATC	7 cut(s)	663, 727, 821, 1043, 1143, 1335, 1344
MboI	GATC	7 cut(s)	661, 725, 819, 1041, 1141, 1333, 1342
MflI	RGATCY	1 cut(s)	1141
MhlI	GDGCHC	2 cut(s)	438, 603
MlyI	GAGTC	2 cut(s)	562, 1237
MmeI	TCCRAC	2 cut(s)	150, 1193
MroXI	GAANNNNTTC	1 cut(s)	115
MseI	TTAA	4 cut(s)	519, 540, 1164, 1394
MspA1I	CMGCKG	2 cut(s)	1258, 1283
MvnI	CGCG	2 cut(s)	648, 666
MwoI	GCNNNNNNNGC	6 cut(s)	144, 343, 352, 654, 663, 1083
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	7 cut(s)	661, 725, 819, 1041, 1141, 1333, 1342
NlaIV	GGNNCC	2 cut(s)	908, 1143
NmeAIII	GCCGAG	2 cut(s)	1082, 1126
NmuCI	GTSAC	3 cut(s)	186, 554, 830
NspI	RCATGY	2 cut(s)	494, 620
PaqCI	CACCTGC	1 cut(s)	1292
PceI	AGGCCT	1 cut(s)	75
PciI	ACATGT	1 cut(s)	616
PciSI	GCTCTTC	1 cut(s)	426
PdmI	GAANNNNTTC	1 cut(s)	115
PfeI	GAWTC	4 cut(s)	83, 122, 257, 285
PkrI	GCNGC	7 cut(s)	137, 149, 637, 704, 1225, 1257, 1379
PleI	GAGTC	2 cut(s)	561, 1237
PpsI	GAGTC	2 cut(s)	561, 1237
Ppu21I	YACGTR	1 cut(s)	1265
PscI	ACATGT	1 cut(s)	616
PshBI	ATTAAT	1 cut(s)	519
Psp124BI	GAGCTC	2 cut(s)	438, 603
PspN4I	GGNNCC	2 cut(s)	908, 1143
PspPI	GGNCC	1 cut(s)	1277
PsuI	RGATCY	1 cut(s)	1141
PvuII	CAGCTG	2 cut(s)	1258, 1283
RsaI	GTAC	2 cut(s)	689, 1212
RsaNI	GTAC	2 cut(s)	688, 1211
SacI	GAGCTC	2 cut(s)	438, 603
SapI	GCTCTTC	1 cut(s)	426
SaqAI	TTAA	4 cut(s)	519, 540, 1164, 1394
SatI	GCNGC	7 cut(s)	136, 148, 636, 703, 1224, 1256, 1378
Sau3AI	GATC	7 cut(s)	661, 725, 819, 1041, 1141, 1333, 1342
Sau96I	GGNCC	1 cut(s)	1277
SchI	GAGTC	2 cut(s)	562, 1237
SduI	GDGCHC	2 cut(s)	438, 603
SfaNI	GCATC	2 cut(s)	1167, 1179
SfcI	CTRYAG	2 cut(s)	441, 1289
SinI	GGWCC	1 cut(s)	1277
SmlI	CTYRAG	2 cut(s)	683, 1112
SmoI	CTYRAG	2 cut(s)	683, 1112
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	6 cut(s)	494, 648, 666, 1224, 1375, 1378
SspMI	CTAG	6 cut(s)	639, 740, 770, 965, 1037, 1151
SstI	GAGCTC	2 cut(s)	438, 603
StuI	AGGCCT	1 cut(s)	75
StyI	CCWWGG	2 cut(s)	229, 561
TaaI	ACNGT	4 cut(s)	26, 214, 532, 830
TaiI	ACGT	1 cut(s)	1267
TaqI	TCGA	1 cut(s)	78
TatI	WGTACW	1 cut(s)	1210
TauI	GCSGC	2 cut(s)	1226, 1380
TfiI	GAWTC	4 cut(s)	83, 122, 257, 285
Tru1I	TTAA	4 cut(s)	519, 540, 1164, 1394
Tru9I	TTAA	4 cut(s)	519, 540, 1164, 1394
TscAI	CASTG	2 cut(s)	31, 664
TseFI	GTSAC	3 cut(s)	186, 554, 830
TseI	GCWGC	5 cut(s)	135, 147, 635, 702, 1255
Tsp45I	GTSAC	3 cut(s)	186, 554, 830
TspDTI	ATGAA	4 cut(s)	47, 75, 788, 970
TspGWI	ACGGA	1 cut(s)	1290
TspRI	CASTG	2 cut(s)	31, 664
VpaK11BI	GGWCC	1 cut(s)	1277
VspI	ATTAAT	1 cut(s)	519
XagI	CCTNNNNNAGG	1 cut(s)	1149
XbaI	TCTAGA	2 cut(s)	739, 1036
XceI	RCATGY	2 cut(s)	494, 620
XmiI	GTMKAC	1 cut(s)	501
XmnI	GAANNNNTTC	1 cut(s)	115
XspI	CTAG	6 cut(s)	639, 740, 770, 965, 1037, 1151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.