Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007384

Physical Location & Seq

Genomic Coordinates Reverse (-)

7375280 .. 7377380

Gene Structure 2101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGACGGCGGAAGTAACGATATGGTGGGGCATTGCAATGGCAGAGACCTTAGGAGAAACGAAAGGAAACCCAGAAATGGAATCAGAGTCACAAAGCGATCCGAGGAAGATCGAGTCGTGTGAGGACGAGCCGTCACCGAGGGGCGTGTTGGAAATCCCCATTACGGACTCGGACTACAGCGGCGGCAGCTGCGGCACATCTTCTTGTTCCGAAAAGACGATGGGCCAGACGCTAATGCGAGACATCAGCATTGGGTTGCAGATGAGAGGCAAGGGAATGTTCGATGCCTTGAAGAAGAAGTCAGCGAGGCGGTTTTCGACCATTCCCATATTGGGTGCCAGCTATGAACTTTCCAGGAGGAACTTGAGGAGGAGACTGGCTCGGATTTGGAACGCCGAGGATGAGGAGGAGGAAGGAGCTGATGGGATGTCCGTTACGAAGCCGTCATGGAGGAACTTTGATTATGCTGAGCTTGCTGCTGCTACTGCCAATTTCAAACCTGAGAACCTGATTGGCAAAGGTGGGCAAGCAGAAGTTTACAAGGGGTTCTTATCCAATGGTACAATTGTAGCAGTCAAGAGGCTAATGAAGAAAGAGAAAGAGAAAGAAAACGAGGATCGAGTTGGCGATTTCTTGGCTGAGGTTGGGATTATTGCACACATAAGACACCCGAATGCTGCTCGCCTACTTGGCTTTGGCATCGACAGTGGTTTGCACCTTGTCCTGCAATTTTCCCCACACGGCAGCTTAGCTTCTCTACTCTTTGGTACAGCAGAATGTATGGATTGGAAGATCAGGTTTAAGGTAGCAATTGGGATAGCAGAAGGTTTGCGATATCTCCATCACGAATGCCACAGGCGCATCATTCACCGGGACATCAAGGCCTCCAATATATTACTAACCGAAGATTATGAAGCTCAAATATCTGATTTCGGACTAGCAAAGTGGCTCCCAGAAAAATGGACTCACCATGTTGTATTCCCTATTGAAGGCACATTCGGGTACTTGTCTCCAGAGTACTTCATGCATGGAATTGTCGACGAGAAGACTGATGTGTTTGCATATGGGGTTTTATTACTGGAGCTCATAACAGGTCGCCGTGCAGTTGATTCAACTCAGCAAAGCCTTGTGACCTGGGCAAAGCCGCTTCTAGATGCAAGTAATATGAAGGAGCTAGCAGATCGCTCTGTTAGAAGATGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009623 GO:0009719 GO:0009723 GO:0009725 GO:0009814 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0032870 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

402

Amino Acids

44.87

Weight (kDa)

6.05

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10520 AT5G10520 AT5G65530
fragaria_vesca	FvH4_1g19500 FvH4_1g19500 FvH4_1g19500 FvH4_1g19500 FvH4_1g19500
malus_domestica	MD01G1040800.v1.1 MD15G1310700.v1.1
prunus_persica	Prupe.6G203200_v2.0.a1 Prupe.6G203200_v2.0.a1
pyrus_communis	pycom01g06840 pycom15g27430
rosa_chinensis	RchiOBHm_Chr2g0111001
rosa_laevigata	RLG00000017857
rosa_multiflora	Rmu_co8060254.1_g000001 Rmu_sc0003994.1_g000009
rosa_roxburghii	Rroxscaffold_2G00132750
rosa_rugosa	Rorug02G0170500
rosa_samantha	Rh2AG222500 Rh2BG234500 Rh2CG225800 Rh2DG230400
rosa_wichuraiana	Rw2G017190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	1038
AciI	CCGC	6 cut(s)	8, 180, 183, 192, 310, 1145
AclWI	GGATC	2 cut(s)	92, 624
AfaI	GTAC	4 cut(s)	562, 769, 1004, 1019
AfiI	CCNNNNNNNGG	4 cut(s)	76, 163, 332, 989
AgsI	TTSAA	4 cut(s)	292, 496, 989, 1113
AhdI	GACNNNNNGTC	1 cut(s)	130
AjnI	CCWGG	2 cut(s)	353, 1133
AluBI	AGCT	9 cut(s)	189, 342, 419, 472, 747, 752, 917, 1084, 1174
AluI	AGCT	9 cut(s)	189, 342, 419, 472, 747, 752, 917, 1084, 1174
Alw21I	GWGCWC	1 cut(s)	1086
Alw26I	GTCTC	4 cut(s)	38, 234, 367, 1014
AlwI	GGATC	2 cut(s)	92, 624
AoxI	GGCC	2 cut(s)	223, 882
ApeKI	GCWGC	6 cut(s)	186, 189, 476, 479, 677, 744
AspLEI	GCGC	1 cut(s)	861
AspS9I	GGNCC	1 cut(s)	223
AsuC2I	CCSGG	1 cut(s)	872
AsuHPI	GGTGA	3 cut(s)	126, 860, 959
AsuNHI	GCTAGC	1 cut(s)	1174
AxyI	CCTNAGG	1 cut(s)	49
BaeI	ACNNNNGTAYC	2 cut(s)	552, 585
BanI	GGYRCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	1086
BbsI	GAAGAC	1 cut(s)	1052
Bbv12I	GWGCWC	1 cut(s)	1086
BbvCI	CCTCAGC	1 cut(s)	639
BbvI	GCAGC	6 cut(s)	176, 198, 463, 466, 664, 756
BccI	CCATC	3 cut(s)	214, 416, 849
BceAI	ACGGC	5 cut(s)	21, 115, 427, 757, 1083
BciT130I	CCWGG	2 cut(s)	355, 1135
BcnI	CCSGG	1 cut(s)	872
BcoDI	GTCTC	4 cut(s)	38, 234, 367, 1014
BfaI	CTAG	3 cut(s)	938, 1151, 1175
BfmI	CTRYAG	1 cut(s)	175
BglI	GCCNNNNNGGC	1 cut(s)	690
BlpI	GCTNAGC	2 cut(s)	468, 748
BmcAI	AGTACT	1 cut(s)	1019
Bme1390I	CCNGG	3 cut(s)	355, 872, 1135
BmeRI	GACNNNNNGTC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	2 cut(s)	337, 950
BmrFI	CCNGG	3 cut(s)	355, 872, 1135
BmsI	GCATC	5 cut(s)	274, 708, 870, 1144, 1187
BmtI	GCTAGC	1 cut(s)	1178
BpiI	GAAGAC	1 cut(s)	1052
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
BpmI	CTGGAG	2 cut(s)	996, 1100
Bpu10I	CCTNAGC	1 cut(s)	639
Bpu1102I	GCTNAGC	2 cut(s)	468, 748
BpuEI	CTTGAG	1 cut(s)	385
BpuMI	CCSGG	1 cut(s)	872
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	4 cut(s)	101, 137, 396, 1134
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 163, 332, 989
Bse1I	ACTGG	2 cut(s)	381, 1083
Bse21I	CCTNAGG	1 cut(s)	49
Bse3DI	GCAATG	2 cut(s)	30, 42
BseBI	CCWGG	2 cut(s)	355, 1135
BseDI	CCNNGG	4 cut(s)	101, 137, 396, 1134
BseGI	GGATG	2 cut(s)	406, 432
BseLI	CCNNNNNNNGG	4 cut(s)	76, 163, 332, 989
BseMI	GCAATG	2 cut(s)	30, 42
BseMII	CTCAG	4 cut(s)	459, 492, 630, 1130
BseNI	ACTGG	2 cut(s)	381, 1083
BseRI	GAGGAG	4 cut(s)	382, 385, 419, 422
BseXI	GCAGC	6 cut(s)	176, 198, 463, 466, 664, 756
BsgI	GTGCAG	1 cut(s)	1122
BshFI	GGCC	2 cut(s)	225, 884
BshNI	GGYRCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	1086
BsiSI	CCGG	1 cut(s)	871
BslFI	GGGAC	1 cut(s)	887
BslI	CCNNNNNNNGG	4 cut(s)	76, 163, 332, 989
BsmAI	GTCTC	4 cut(s)	38, 234, 367, 1014
BsmFI	GGGAC	1 cut(s)	887
BsmI	GAATGC	2 cut(s)	679, 854
BsnI	GGCC	2 cut(s)	225, 884
Bso31I	GGTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	1086
Bsp143I	GATC	5 cut(s)	97, 108, 616, 792, 1180
Bsp1720I	GCTNAGC	2 cut(s)	468, 748
BspACI	CCGC	6 cut(s)	8, 180, 183, 192, 310, 1145
BspANI	GGCC	2 cut(s)	225, 884
BspCNI	CTCAG	4 cut(s)	460, 493, 631, 1129
BspLI	GGNNCC	2 cut(s)	337, 950
BspOI	GCTAGC	1 cut(s)	1178
BspPI	GGATC	2 cut(s)	92, 624
BspT107I	GGYRCC	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	38
BsrDI	GCAATG	2 cut(s)	30, 42
BsrI	ACTGG	2 cut(s)	381, 1083
BssECI	CCNNGG	4 cut(s)	101, 137, 396, 1134
BssMI	GATC	5 cut(s)	97, 108, 616, 792, 1180
Bst2UI	CCWGG	2 cut(s)	355, 1135
Bst4CI	ACNGT	1 cut(s)	707
BstC8I	GCNNGC	5 cut(s)	340, 474, 528, 682, 1176
BstDEI	CTNAG	6 cut(s)	49, 468, 501, 639, 748, 1116
BstENI	CCTNNNNNAGG	1 cut(s)	987
BstF5I	GGATG	2 cut(s)	406, 432
BstHHI	GCGC	1 cut(s)	861
BstKTI	GATC	5 cut(s)	100, 111, 619, 795, 1183
BstMAI	GTCTC	4 cut(s)	38, 234, 367, 1014
BstMBI	GATC	5 cut(s)	97, 108, 616, 792, 1180
BstMWI	GCNNNNNNNGC	7 cut(s)	186, 189, 192, 473, 485, 690, 858
BstNI	CCWGG	2 cut(s)	355, 1135
BstSCI	CCNGG	3 cut(s)	353, 870, 1133
BstSFI	CTRYAG	1 cut(s)	175
BstV1I	GCAGC	6 cut(s)	176, 198, 463, 466, 664, 756
BstV2I	GAAGAC	1 cut(s)	1052
BstXI	CCANNNNNNTGG	1 cut(s)	960
Bsu36I	CCTNAGG	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	225, 884
BtsCI	GGATG	2 cut(s)	406, 432
BtsIMutI	CAGTG	1 cut(s)	712
Cac8I	GCNNGC	5 cut(s)	340, 474, 528, 682, 1176
CfoI	GCGC	1 cut(s)	861
Cfr13I	GGNCC	1 cut(s)	223
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	4 cut(s)	561, 768, 1003, 1018
CviAII	CATG	4 cut(s)	447, 971, 1024, 1028
CviQI	GTAC	4 cut(s)	561, 768, 1003, 1018
DdeI	CTNAG	6 cut(s)	49, 468, 501, 639, 748, 1116
DpnI	GATC	5 cut(s)	99, 110, 618, 794, 1182
DpnII	GATC	5 cut(s)	97, 108, 616, 792, 1180
DriI	GACNNNNNGTC	1 cut(s)	130
Eam1105I	GACNNNNNGTC	1 cut(s)	130
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	1084
Eco147I	AGGCCT	1 cut(s)	884
Eco24I	GRGCYC	1 cut(s)	1086
Eco31I	GGTCTC	1 cut(s)	38
Eco32I	GATATC	1 cut(s)	836
Eco53kI	GAGCTC	1 cut(s)	1084
Eco81I	CCTNAGG	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	1084
EcoNI	CCTNNNNNAGG	1 cut(s)	987
EcoRII	CCWGG	2 cut(s)	353, 1133
EcoRV	GATATC	1 cut(s)	836
EcoT22I	ATGCAT	2 cut(s)	1029, 1202
EcoT38I	GRGCYC	1 cut(s)	1086
FaeI	CATG	4 cut(s)	450, 974, 1027, 1031
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FaqI	GGGAC	1 cut(s)	887
FatI	CATG	4 cut(s)	446, 970, 1023, 1027
FauNDI	CATATG	2 cut(s)	1063, 1202
FblI	GTMKAC	1 cut(s)	1038
FokI	GGATG	2 cut(s)	413, 439
FriOI	GRGCYC	1 cut(s)	1086
FspBI	CTAG	3 cut(s)	938, 1151, 1175
GlaI	GCGC	1 cut(s)	860
GsuI	CTGGAG	2 cut(s)	996, 1100
HaeIII	GGCC	2 cut(s)	225, 884
HapII	CCGG	1 cut(s)	871
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	1 cut(s)	861
Hin1II	CATG	4 cut(s)	450, 974, 1027, 1031
Hin6I	GCGC	1 cut(s)	859
HinP1I	GCGC	1 cut(s)	859
HincII	GTYRAC	1 cut(s)	1039
HindII	GTYRAC	1 cut(s)	1039
HinfI	GANTC	6 cut(s)	80, 86, 113, 167, 964, 1109
HpaII	CCGG	1 cut(s)	871
HphI	GGTGA	3 cut(s)	126, 860, 959
Hpy166II	GTNNAC	2 cut(s)	538, 1039
Hpy188I	TCNGA	7 cut(s)	85, 102, 172, 211, 384, 928, 935
Hpy188III	TCNNGA	4 cut(s)	577, 845, 1013, 1151
Hpy8I	GTNNAC	2 cut(s)	538, 1039
Hpy99I	CGWCG	1 cut(s)	1043
HpyAV	CCTTC	4 cut(s)	407, 818, 983, 1162
HpyCH4III	ACNGT	1 cut(s)	707
HpyF10VI	GCNNNNNNNGC	7 cut(s)	186, 189, 192, 473, 485, 690, 858
HpyF3I	CTNAG	6 cut(s)	49, 468, 501, 639, 748, 1116
Hsp92II	CATG	4 cut(s)	450, 974, 1027, 1031
HspAI	GCGC	1 cut(s)	859
Kzo9I	GATC	5 cut(s)	97, 108, 616, 792, 1180
LmnI	GCTCC	4 cut(s)	416, 954, 1081, 1171
Lsp1109I	GCAGC	6 cut(s)	176, 198, 463, 466, 664, 756
LweI	GCATC	5 cut(s)	274, 708, 870, 1144, 1187
MaeI	CTAG	3 cut(s)	938, 1151, 1175
MaeIII	GTNAC	5 cut(s)	13, 87, 132, 433, 1129
MalI	GATC	5 cut(s)	99, 110, 618, 794, 1182
MboI	GATC	5 cut(s)	97, 108, 616, 792, 1180
MboII	GAAGA	9 cut(s)	118, 192, 304, 307, 601, 802, 917, 1057, 1206
MfeI	CAATTG	2 cut(s)	564, 810
MhlI	GDGCHC	1 cut(s)	1086
MluCI	AATT	5 cut(s)	490, 564, 728, 810, 1032
MlyI	GAGTC	4 cut(s)	95, 122, 161, 958
MmeI	TCCRAC	1 cut(s)	129
Mph1103I	ATGCAT	2 cut(s)	1029, 1202
MseI	TTAA	1 cut(s)	801
MslI	CAYNNNNRTG	2 cut(s)	35, 672
MspA1I	CMGCKG	2 cut(s)	180, 189
MspI	CCGG	1 cut(s)	871
MspR9I	CCNGG	3 cut(s)	355, 872, 1135
MunI	CAATTG	2 cut(s)	564, 810
Mva1269I	GAATGC	2 cut(s)	679, 854
MvaI	CCWGG	2 cut(s)	355, 1135
MwoI	GCNNNNNNNGC	7 cut(s)	186, 189, 192, 473, 485, 690, 858
NciI	CCSGG	1 cut(s)	872
NdeI	CATATG	2 cut(s)	1063, 1202
NdeII	GATC	5 cut(s)	97, 108, 616, 792, 1180
NheI	GCTAGC	1 cut(s)	1174
NlaIII	CATG	4 cut(s)	450, 974, 1027, 1031
NlaIV	GGNNCC	2 cut(s)	337, 950
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	3 cut(s)	87, 132, 1129
NsiI	ATGCAT	2 cut(s)	1029, 1202
PceI	AGGCCT	1 cut(s)	884
PctI	GAATGC	2 cut(s)	679, 854
PfeI	GAWTC	2 cut(s)	80, 1109
PfoI	TCCNGGA	1 cut(s)	353
PleI	GAGTC	4 cut(s)	94, 121, 161, 958
PpsI	GAGTC	4 cut(s)	94, 121, 161, 958
Psp124BI	GAGCTC	1 cut(s)	1086
Psp6I	CCWGG	2 cut(s)	353, 1133
PspGI	CCWGG	2 cut(s)	353, 1133
PspN4I	GGNNCC	2 cut(s)	337, 950
PspPI	GGNCC	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	189
RsaI	GTAC	4 cut(s)	562, 769, 1004, 1019
RsaNI	GTAC	4 cut(s)	561, 768, 1003, 1018
RseI	CAYNNNNRTG	2 cut(s)	35, 672
SacI	GAGCTC	1 cut(s)	1086
SalI	GTCGAC	1 cut(s)	1037
SaqAI	TTAA	1 cut(s)	801
Sau3AI	GATC	5 cut(s)	97, 108, 616, 792, 1180
Sau96I	GGNCC	1 cut(s)	223
ScaI	AGTACT	1 cut(s)	1019
SchI	GAGTC	4 cut(s)	95, 122, 161, 958
ScrFI	CCNGG	3 cut(s)	355, 872, 1135
SduI	GDGCHC	1 cut(s)	1086
SfaNI	GCATC	5 cut(s)	274, 708, 870, 1144, 1187
SfcI	CTRYAG	1 cut(s)	175
SmiMI	CAYNNNNRTG	2 cut(s)	35, 672
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	5 cut(s)	490, 564, 728, 810, 1032
SseBI	AGGCCT	1 cut(s)	884
SsiI	CCGC	6 cut(s)	8, 180, 183, 192, 310, 1145
SspMI	CTAG	3 cut(s)	938, 1151, 1175
SstI	GAGCTC	1 cut(s)	1086
StuI	AGGCCT	1 cut(s)	884
StyD4I	CCNGG	3 cut(s)	353, 870, 1133
TaaI	ACNGT	1 cut(s)	707
TaqI	TCGA	6 cut(s)	111, 282, 317, 619, 702, 1038
TasI	AATT	5 cut(s)	490, 564, 728, 810, 1032
TatI	WGTACW	1 cut(s)	1017
TauI	GCSGC	4 cut(s)	183, 186, 195, 1147
TfiI	GAWTC	2 cut(s)	80, 1109
Tru1I	TTAA	1 cut(s)	801
Tru9I	TTAA	1 cut(s)	801
TscAI	CASTG	1 cut(s)	712
TseFI	GTSAC	3 cut(s)	87, 132, 1129
TseI	GCWGC	6 cut(s)	186, 189, 476, 479, 677, 744
Tsp45I	GTSAC	3 cut(s)	87, 132, 1129
TspDTI	ATGAA	5 cut(s)	360, 602, 927, 1012, 1181
TspGWI	ACGGA	2 cut(s)	179, 421
TspRI	CASTG	1 cut(s)	712
XagI	CCTNNNNNAGG	1 cut(s)	987
XbaI	TCTAGA	1 cut(s)	1150
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	1038
XspI	CTAG	3 cut(s)	938, 1151, 1175
ZrmI	AGTACT	1 cut(s)	1019
Zsp2I	ATGCAT	2 cut(s)	1029, 1202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.