FvH4_1g19500

Receptor-like cytosolic serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
11773282 .. 11776727
3446 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19500.t1

Sequence Viewer

Length: 1503 bp
ATGGCAGTGGAAGAGTTGGTGAGCGAAACGAAAGGAAAAGCAGAGATAGGAAACAAAGATGCAGAGATAAAAGCAGAGCTAGAAAACGCAGATGCAGTAGATGAAGAGATAAAATCCCAAGATGACCTGAAGAAGGCAGAGCTGTGCGAGCAGGAGCCTTCACCGAGGGGTGTACTGGAAGCCCTTGGTACGGACTCAGACAGCAGCAGCAGCTGTGCGTCTTCATTTTCTTCTGATAGACCACCACTGAGCCAGCAGGGCACGCTGGGGCGTGAAATCAGCAATGGAATGCAATGGAATAAAGGGAAGGAGATGTTTGATGCCTTGAAGAAGAAGTCAGCGAGGAGATTCTCGATGATCCCAATGCTGGGAAATAGCTATGAATTCTCTAGTAGAAAGTTGAGGAAGAGATTGGCCAGGATTTGGAGCACCGACGACGATGATGAGGAGGAAAGGGAGAGAGAAGATTGTGAAGGATATCTGGCGTTGAAACCCTCCTGGAGGAACTTTGATTATGCAGAACTTGCTGCTGCTACCGCCGATTTCAAACCTGATAATTTGATTGGGAAAGGTGGGCAAGCAGAAGTTTACAAGGGAATCTTAAACAATGGTGAAATTGTAGCAGTAAAGAGGCTAATGAAGAAAGAAAAAGAGGTTGAAAAGGAGGACAGAATTGGTGATTTCTTAGCAGAGCTTGGGGTTATCGCACACATTAGCCACCCGAATGCTGCTAAGTTGCTCGGATTTGGCATCGATGGTGGTTTGCACCTAGTCCTCCAGTATTCACCACATGGCAGCTTGGCTTCTCTACTATTTGCTTCGGAGAAACATATGGAATGGAAGATAAGGTTTAAGGTAGCAGTTGGGGTAGCAGAAGGGTTACAATATCTCCATCATGATTGCCACAGGCGCATCATTCATAGAGACATCAAGGCCTCCAATATATTATTGTCCGAAGATTTTGAGGCTCAGATATCTGATTTCGGATTAGCAAAGTGGCTCCCTGAAAAATGGACTCATCATGTCGTATTCCCTATTGAAGGCACATTCGGATACTTGTCTCCAGAGTACTTTATGCATGGAATCGTCGACGAGAAGACTGATGTATTTGCATATGGAGTTTTATTACTGGAGATCATAACAGGTCGTCGTGCAGTTGATAACAGTCAACAAAGCCTTGTGATATGGGCAAAACCACTTCTGGATTCAGGCAATATGAAGGAACTAGCAGATCCTCGATTAGAAGGTAACTATGATCCGGTAGAAATAAAAAGAGCCATGTTGGTGGCCTCAATGTGCATTCGACATCAATCGACCAAGCGTCCATACATGACTCGGGTAGTGAAAATACTGGAGGGTGAGGATCCAAATGGAGAACAGTTGAAACAAAAGTCTACACAAGTGAGATCACAAGTCTTAGATGCTTGTGATTTGGAAGATTATACCTGTTCCAACTATCTCAGCGACCTAAATCGCCACCGGGAACTAGTAATGGATCAGTAG

Protein Analysis

501

Amino Acids

56.35

Weight (kDa)

5.37

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 185 - 393 1.8e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 186 - 450 2.4e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 423
AccI GTMKAC 2 cut(s) 1089, 1394
AciI CCGC 1 cut(s) 537
AclWI GGATC 5 cut(s) 352, 1226, 1250, 1358, 1371
AcoI YGGCCR 1 cut(s) 414
AcsI RAATTY 1 cut(s) 383
AcuI CTGAAG 1 cut(s) 149
AfaI GTAC 3 cut(s) 174, 190, 1070
AfiI CCNNNNNNNGG 7 cut(s) 133, 190, 367, 368, 423, 501, 1040
AgsI TTSAA 6 cut(s) 328, 490, 547, 659, 1040, 1384
AhdI GACNNNNNGTC 1 cut(s) 1320
AhlI ACTAGT 1 cut(s) 1486
AjnI CCWGG 2 cut(s) 416, 497
AluBI AGCT 6 cut(s) 79, 142, 213, 378, 694, 798
AluI AGCT 6 cut(s) 79, 142, 213, 378, 694, 798
Alw21I GWGCWC 1 cut(s) 431
Alw26I GTCTC 2 cut(s) 918, 1065
AlwI GGATC 5 cut(s) 352, 1226, 1250, 1358, 1371
AlwNI CAGNNNCTG 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 1335
AoxI GGCC 3 cut(s) 414, 933, 1287
ApeKI GCWGC 7 cut(s) 204, 207, 210, 527, 530, 728, 795
ApoI RAATTY 1 cut(s) 383
AspLEI GCGC 1 cut(s) 912
AsuC2I CCSGG 1 cut(s) 1481
AsuHPI GGTGA 6 cut(s) 31, 153, 623, 689, 777, 1370
AvaI CYCGRG 1 cut(s) 1335
BaeGI GKGCMC 1 cut(s) 263
BalI TGGCCA 1 cut(s) 416
BamHI GGATCC 1 cut(s) 1363
BbsI GAAGAC 2 cut(s) 213, 1103
Bbv12I GWGCWC 1 cut(s) 431
BbvI GCAGC 7 cut(s) 216, 219, 222, 514, 517, 715, 807
BccI CCATC 2 cut(s) 749, 900
BciT130I CCWGG 2 cut(s) 418, 499
BciVI GTATCC 1 cut(s) 1046
BcnI CCSGG 1 cut(s) 1481
BcoDI GTCTC 2 cut(s) 918, 1065
BcuI ACTAGT 1 cut(s) 1486
BfaI CTAG 5 cut(s) 80, 390, 770, 1226, 1487
BfuI GTATCC 1 cut(s) 1046
BglI GCCNNNNNGGC 1 cut(s) 258
BisI GCNGC 7 cut(s) 205, 208, 211, 528, 531, 729, 796
BlsI GCNGC 7 cut(s) 206, 209, 212, 529, 532, 730, 797
BmcAI AGTACT 1 cut(s) 1070
Bme1390I CCNGG 3 cut(s) 418, 499, 1481
BmeRI GACNNNNNGTC 1 cut(s) 1320
BmeT110I CYCGRG 1 cut(s) 1335
BmiI GGNNCC 3 cut(s) 156, 1001, 1365
BmrFI CCNGG 3 cut(s) 418, 499, 1481
BmsI GCATC 6 cut(s) 49, 82, 310, 759, 921, 1411
BpiI GAAGAC 2 cut(s) 213, 1103
BpmI CTGGAG 5 cut(s) 520, 761, 1047, 1151, 1373
BpuMI CCSGG 1 cut(s) 1481
Bsa29I ATCGAT 1 cut(s) 753
BsaJI CCNNGG 2 cut(s) 164, 184
BsaWI WCCGGW 1 cut(s) 1258
BsaXI ACNNNNNCTCC 2 cut(s) 873, 903
Bsc4I CCNNNNNNNGG 7 cut(s) 133, 190, 367, 368, 423, 501, 1040
Bse1I ACTGG 4 cut(s) 180, 778, 1134, 1356
Bse3DI GCAATG 2 cut(s) 289, 299
BseBI CCWGG 2 cut(s) 418, 499
BseCI ATCGAT 1 cut(s) 753
BseDI CCNNGG 2 cut(s) 164, 184
BseLI CCNNNNNNNGG 7 cut(s) 133, 190, 367, 368, 423, 501, 1040
BseMI GCAATG 2 cut(s) 289, 299
BseMII CTCAG 4 cut(s) 210, 239, 983, 1474
BseNI ACTGG 4 cut(s) 180, 778, 1134, 1356
BseRI GAGGAG 2 cut(s) 358, 461
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 7 cut(s) 216, 219, 222, 514, 517, 715, 807
BseYI CCCAGC 2 cut(s) 265, 367
BsgI GTGCAG 1 cut(s) 1173
BshFI GGCC 3 cut(s) 416, 935, 1289
BshVI ATCGAT 1 cut(s) 753
BsiHKAI GWGCWC 1 cut(s) 431
BsiHKCI CYCGRG 1 cut(s) 1335
BsiSI CCGG 2 cut(s) 1259, 1480
BslI CCNNNNNNNGG 7 cut(s) 133, 190, 367, 368, 423, 501, 1040
BsmAI GTCTC 2 cut(s) 918, 1065
BsmI GAATGC 3 cut(s) 294, 730, 1299
BsnI GGCC 3 cut(s) 416, 935, 1289
BsoBI CYCGRG 1 cut(s) 1335
Bsp1286I GDGCHC 2 cut(s) 263, 431
Bsp143I GATC 7 cut(s) 357, 1134, 1231, 1255, 1363, 1406, 1495
BspACI CCGC 1 cut(s) 537
BspANI GGCC 3 cut(s) 416, 935, 1289
BspCNI CTCAG 4 cut(s) 209, 240, 982, 1473
BspDI ATCGAT 1 cut(s) 753
BspHI TCATGA 1 cut(s) 895
BspLI GGNNCC 3 cut(s) 156, 1001, 1365
BspPI GGATC 5 cut(s) 352, 1226, 1250, 1358, 1371
BsrDI GCAATG 2 cut(s) 289, 299
BsrI ACTGG 4 cut(s) 180, 778, 1134, 1356
BssECI CCNNGG 2 cut(s) 164, 184
BssMI GATC 7 cut(s) 357, 1134, 1231, 1255, 1363, 1406, 1495
BssT1I CCWWGG 1 cut(s) 184
Bst2UI CCWGG 2 cut(s) 418, 499
Bst4CI ACNGT 2 cut(s) 1166, 1380
Bst6I CTCTTC 3 cut(s) 6, 99, 401
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 4 cut(s) 149, 254, 263, 579
BstDEI CTNAG 7 cut(s) 196, 248, 685, 732, 969, 1417, 1460
BstENI CCTNNNNNAGG 3 cut(s) 131, 499, 1038
BstHHI GCGC 1 cut(s) 912
BstKTI GATC 7 cut(s) 360, 1137, 1234, 1258, 1366, 1409, 1498
BstMAI GTCTC 2 cut(s) 918, 1065
BstMBI GATC 7 cut(s) 357, 1134, 1231, 1255, 1363, 1406, 1495
BstMWI GCNNNNNNNGC 7 cut(s) 148, 210, 258, 262, 524, 536, 909
BstNI CCWGG 2 cut(s) 418, 499
BstSCI CCNGG 3 cut(s) 416, 497, 1479
BstSLI GKGCMC 1 cut(s) 263
BstV1I GCAGC 7 cut(s) 216, 219, 222, 514, 517, 715, 807
BstV2I GAAGAC 2 cut(s) 213, 1103
BstX2I RGATCY 2 cut(s) 1231, 1363
BstXI CCANNNNNNTGG 1 cut(s) 1285
BstYI RGATCY 2 cut(s) 1231, 1363
Bsu15I ATCGAT 1 cut(s) 753
BsuI GTATCC 1 cut(s) 1046
BsuRI GGCC 3 cut(s) 416, 935, 1289
BsuTUI ATCGAT 1 cut(s) 753
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 245
Cac8I GCNNGC 4 cut(s) 149, 254, 263, 579
CaiI CAGNNNCTG 1 cut(s) 213
CciI TCATGA 1 cut(s) 895
CfoI GCGC 1 cut(s) 912
ClaI ATCGAT 1 cut(s) 753
CseI GACGC 2 cut(s) 207, 1310
Csp6I GTAC 3 cut(s) 173, 189, 1069
CviAII CATG 6 cut(s) 791, 896, 1022, 1079, 1279, 1330
CviQI GTAC 3 cut(s) 173, 189, 1069
DdeI CTNAG 7 cut(s) 196, 248, 685, 732, 969, 1417, 1460
DpnI GATC 7 cut(s) 359, 1136, 1233, 1257, 1365, 1408, 1497
DpnII GATC 7 cut(s) 357, 1134, 1231, 1255, 1363, 1406, 1495
DriI GACNNNNNGTC 1 cut(s) 1320
EaeI YGGCCR 1 cut(s) 414
Eam1104I CTCTTC 3 cut(s) 6, 99, 401
Eam1105I GACNNNNNGTC 1 cut(s) 1320
EarI CTCTTC 3 cut(s) 6, 99, 401
Eco130I CCWWGG 1 cut(s) 184
Eco147I AGGCCT 1 cut(s) 935
Eco32I GATATC 2 cut(s) 479, 975
Eco57I CTGAAG 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 1335
EcoNI CCTNNNNNAGG 3 cut(s) 131, 499, 1038
EcoRI GAATTC 1 cut(s) 383
EcoRII CCWGG 2 cut(s) 416, 497
EcoRV GATATC 2 cut(s) 479, 975
EcoT14I CCWWGG 1 cut(s) 184
EcoT22I ATGCAT 1 cut(s) 1080
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 6 cut(s) 794, 899, 1025, 1082, 1282, 1333
FalI AAGNNNNNCTT 2 cut(s) 584, 616
FatI CATG 6 cut(s) 790, 895, 1021, 1078, 1278, 1329
FauNDI CATATG 2 cut(s) 831, 1114
FblI GTMKAC 2 cut(s) 1089, 1394
Fnu4HI GCNGC 7 cut(s) 205, 208, 211, 528, 531, 729, 796
Fsp4HI GCNGC 7 cut(s) 205, 208, 211, 528, 531, 729, 796
FspBI CTAG 5 cut(s) 80, 390, 770, 1226, 1487
GlaI GCGC 1 cut(s) 911
GluI GCNGC 7 cut(s) 205, 208, 211, 528, 531, 729, 796
GsaI CCCAGC 2 cut(s) 269, 371
GsuI CTGGAG 5 cut(s) 520, 761, 1047, 1151, 1373
HaeIII GGCC 3 cut(s) 416, 935, 1289
HapII CCGG 2 cut(s) 1259, 1480
HgaI GACGC 2 cut(s) 207, 1310
HhaI GCGC 1 cut(s) 912
Hin1II CATG 6 cut(s) 794, 899, 1025, 1082, 1282, 1333
Hin6I GCGC 1 cut(s) 910
HinP1I GCGC 1 cut(s) 910
HincII GTYRAC 2 cut(s) 1090, 1169
HindII GTYRAC 2 cut(s) 1090, 1169
HinfI GANTC 7 cut(s) 194, 348, 597, 1015, 1083, 1205, 1333
HpaII CCGG 2 cut(s) 1259, 1480
HphI GGTGA 6 cut(s) 31, 153, 623, 689, 777, 1370
Hpy166II GTNNAC 5 cut(s) 173, 589, 1090, 1169, 1395
Hpy188I TCNGA 9 cut(s) 199, 235, 743, 823, 955, 972, 979, 986, 1052
Hpy188III TCNNGA 4 cut(s) 352, 896, 1064, 1202
Hpy8I GTNNAC 5 cut(s) 173, 589, 1090, 1169, 1395
Hpy99I CGWCG 5 cut(s) 437, 440, 1091, 1094, 1152
HpyAV CCTTC 8 cut(s) 127, 168, 301, 467, 869, 1034, 1213, 1238
HpyCH4III ACNGT 2 cut(s) 1166, 1380
HpyCH4V TGCA 9 cut(s) 62, 95, 292, 518, 766, 1078, 1112, 1154, 1299
HpyF10VI GCNNNNNNNGC 7 cut(s) 148, 210, 258, 262, 524, 536, 909
HpyF3I CTNAG 7 cut(s) 196, 248, 685, 732, 969, 1417, 1460
Hsp92II CATG 6 cut(s) 794, 899, 1025, 1082, 1282, 1333
HspAI GCGC 1 cut(s) 910
Kzo9I GATC 7 cut(s) 357, 1134, 1231, 1255, 1363, 1406, 1495
LmnI GCTCC 3 cut(s) 154, 426, 1005
Lsp1109I GCAGC 7 cut(s) 216, 219, 222, 514, 517, 715, 807
LweI GCATC 6 cut(s) 49, 82, 310, 759, 921, 1411
MaeI CTAG 5 cut(s) 80, 390, 770, 1226, 1487
MaeIII GTNAC 2 cut(s) 879, 1247
MalI GATC 7 cut(s) 359, 1136, 1233, 1257, 1365, 1408, 1497
MboI GATC 7 cut(s) 357, 1134, 1231, 1255, 1363, 1406, 1495
MflI RGATCY 2 cut(s) 1231, 1363
MhlI GDGCHC 2 cut(s) 263, 431
MlsI TGGCCA 1 cut(s) 416
MluCI AATT 4 cut(s) 383, 556, 615, 672
MluNI TGGCCA 1 cut(s) 416
MlyI GAGTC 3 cut(s) 188, 1009, 1327
MmeI TCCRAC 1 cut(s) 1476
Mox20I TGGCCA 1 cut(s) 416
Mph1103I ATGCAT 1 cut(s) 1080
MscI TGGCCA 1 cut(s) 416
MseI TTAA 2 cut(s) 602, 852
MslI CAYNNNNRTG 2 cut(s) 723, 1283
Msp20I TGGCCA 1 cut(s) 416
MspA1I CMGCKG 1 cut(s) 213
MspI CCGG 2 cut(s) 1259, 1480
MspR9I CCNGG 3 cut(s) 418, 499, 1481
Mva1269I GAATGC 3 cut(s) 294, 730, 1299
MvaI CCWGG 2 cut(s) 418, 499
MwoI GCNNNNNNNGC 7 cut(s) 148, 210, 258, 262, 524, 536, 909
NciI CCSGG 1 cut(s) 1481
NdeI CATATG 2 cut(s) 831, 1114
NdeII GATC 7 cut(s) 357, 1134, 1231, 1255, 1363, 1406, 1495
NlaIII CATG 6 cut(s) 794, 899, 1025, 1082, 1282, 1333
NlaIV GGNNCC 3 cut(s) 156, 1001, 1365
NsiI ATGCAT 1 cut(s) 1080
PagI TCATGA 1 cut(s) 895
PceI AGGCCT 1 cut(s) 935
PctI GAATGC 3 cut(s) 294, 730, 1299
PfeI GAWTC 4 cut(s) 348, 597, 1083, 1205
PflMI CCANNNNNTGG 1 cut(s) 423
PfoI TCCNGGA 1 cut(s) 497
PkrI GCNGC 7 cut(s) 206, 209, 212, 529, 532, 730, 797
PleI GAGTC 3 cut(s) 188, 1009, 1327
PpsI GAGTC 3 cut(s) 188, 1009, 1327
Psp6I CCWGG 2 cut(s) 416, 497
PspFI CCCAGC 2 cut(s) 265, 367
PspGI CCWGG 2 cut(s) 416, 497
PspN4I GGNNCC 3 cut(s) 156, 1001, 1365
PstNI CAGNNNCTG 1 cut(s) 213
PsuI RGATCY 2 cut(s) 1231, 1363
PvuII CAGCTG 1 cut(s) 213
RsaI GTAC 3 cut(s) 174, 190, 1070
RsaNI GTAC 3 cut(s) 173, 189, 1069
RseI CAYNNNNRTG 2 cut(s) 723, 1283
SalI GTCGAC 1 cut(s) 1088
SaqAI TTAA 2 cut(s) 602, 852
SatI GCNGC 7 cut(s) 205, 208, 211, 528, 531, 729, 796
Sau3AI GATC 7 cut(s) 357, 1134, 1231, 1255, 1363, 1406, 1495
ScaI AGTACT 1 cut(s) 1070
SchI GAGTC 3 cut(s) 188, 1009, 1327
ScrFI CCNGG 3 cut(s) 418, 499, 1481
SduI GDGCHC 2 cut(s) 263, 431
SfaNI GCATC 6 cut(s) 49, 82, 310, 759, 921, 1411
SgrDI CGTCGACG 1 cut(s) 1088
SmiMI CAYNNNNRTG 2 cut(s) 723, 1283
SpeI ACTAGT 1 cut(s) 1486
Sse9I AATT 4 cut(s) 383, 556, 615, 672
SseBI AGGCCT 1 cut(s) 935
SsiI CCGC 1 cut(s) 537
SspMI CTAG 5 cut(s) 80, 390, 770, 1226, 1487
StuI AGGCCT 1 cut(s) 935
StyD4I CCNGG 3 cut(s) 416, 497, 1479
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 2 cut(s) 1166, 1380
TaqI TCGA 6 cut(s) 353, 753, 1089, 1237, 1303, 1313
TasI AATT 4 cut(s) 383, 556, 615, 672
TatI WGTACW 2 cut(s) 172, 1068
TfiI GAWTC 4 cut(s) 348, 597, 1083, 1205
Tru1I TTAA 2 cut(s) 602, 852
Tru9I TTAA 2 cut(s) 602, 852
TscAI CASTG 2 cut(s) 12, 252
TseI GCWGC 7 cut(s) 204, 207, 210, 527, 530, 728, 795
TspDTI ATGAA 6 cut(s) 117, 213, 396, 653, 908, 1232
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 2 cut(s) 12, 252
Van91I CCANNNNNTGG 1 cut(s) 423
XagI CCTNNNNNAGG 3 cut(s) 131, 499, 1038
XapI RAATTY 1 cut(s) 383
XmiI GTMKAC 2 cut(s) 1089, 1394
XspI CTAG 5 cut(s) 80, 390, 770, 1226, 1487
ZrmI AGTACT 1 cut(s) 1070
Zsp2I ATGCAT 1 cut(s) 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.