Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007384

Physical Location & Seq

Genomic Coordinates Forward (+)

22888728 .. 22890174

Gene Structure 1447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG225800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCGGTGGAAGAGTCAGTGAGCGAAACGAAAGGAAACGAAGAGATAGGAAACGCAGAGATAGAAAACGCAGATGCAGAGATGGAATCCCAAGGTGATGACCTGAAGAAGGGAGAGTCATGCGAGGGGGAGCCTTCACCTAGGGGTGTACTGGAAGCCCCCGGGACGGACTCGGACTGTAGCAGCAGCTGTGCATCGTCTTCTTGTTCTGATAGACCACCGCTTGGTCATCAGCGCACGCTAATGCGTGACATCAGCAATGGATTGCAATGGACCAAGGGGAAGGAGATGTTTGATGCCTTGAAGAAGAAGTCAGCCAGGAGATTCTCCACAATTCCATTGCTGGGTACTAGCTATGAATTGTCCAGGAGGAACTTGAGGAGGAGATTGGCCAGGATTTGGAGCACCGATGATGGGGAGGAGGATGAAGAGGGAGTTGATTGTGAGGGATATCTGGCGATGAAACCGTCTTGGAGGAACTTTGATTATGCAGAGCTTGCTGTTGCTACTGGCAATTTCAAGCCTGAGAACTTAATTGGGAAAGGTGGGCAAGCAGAAGTGTACAAGGGAATCTTAAACAATGGTGAAGTTGTAGCTGTAAAGAGGCTAATGAAGAAAGAAAAAGAAACTGAAAACTTGGACAGAGTTGGTGATTTCTTAGCAGAGCTTGGGGTTATTGCTCACATTAGCCACCCGAATGCTGCCAAATTGCTCGGATTTGGCATCGATGGTGGTTTGCACCTAGTTCTCCAGTTTTCACCACATGGCAGCTTAGCTTCTCTACTATTTGGTGCTGCACTTGTCCTGTTATTTTTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009623 GO:0009719 GO:0009723 GO:0009725 GO:0009814 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0032870 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

273

Amino Acids

29.71

Weight (kDa)

5.02

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	175 - 262	3.8e-08	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	177 - 262	9e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10520 AT5G10520 AT5G65530
fragaria_vesca	FvH4_1g19500 FvH4_1g19500 FvH4_1g19500 FvH4_1g19500 FvH4_1g19500
malus_domestica	MD01G1040800.v1.1 MD15G1310700.v1.1
prunus_persica	Prupe.6G203200_v2.0.a1 Prupe.6G203200_v2.0.a1
pyrus_communis	pycom01g06840 pycom15g27430
rosa_chinensis	RchiOBHm_Chr2g0111001
rosa_laevigata	RLG00000017857
rosa_multiflora	Rmu_co8060254.1_g000001 Rmu_sc0003994.1_g000009
rosa_roxburghii	Rroxscaffold_2G00132750
rosa_rugosa	Rorug02G0170500
rosa_samantha	Rh2AG222500 Rh2BG234500 Rh2CG225800 Rh2DG230400
rosa_wichuraiana	Rw2G017190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	224, 399
AciI	CCGC	2 cut(s)	5, 221
AcoI	YGGCCR	1 cut(s)	390
AcuI	CTGAAG	1 cut(s)	125
AfaI	GTAC	3 cut(s)	150, 349, 563
AfiI	CCNNNNNNNGG	6 cut(s)	109, 166, 224, 344, 399, 414
AgsI	TTSAA	2 cut(s)	304, 520
AjnI	CCWGG	3 cut(s)	317, 365, 392
AluBI	AGCT	8 cut(s)	189, 354, 496, 596, 667, 771, 776, 819
AluI	AGCT	8 cut(s)	189, 354, 496, 596, 667, 771, 776, 819
Alw21I	GWGCWC	1 cut(s)	407
AlwNI	CAGNNNCTG	1 cut(s)	189
Ama87I	CYCGRG	1 cut(s)	161
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	5 cut(s)	183, 186, 701, 768, 794
AspA2I	CCTAGG	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	273
AsuC2I	CCSGG	2 cut(s)	162, 163
AsuHPI	GGTGA	5 cut(s)	107, 129, 596, 662, 750
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	273
AvrII	CCTAGG	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	407
BbvI	GCAGC	5 cut(s)	195, 198, 688, 780, 781
BccI	CCATC	3 cut(s)	76, 407, 722
BciT130I	CCWGG	3 cut(s)	319, 367, 394
BcnI	CCSGG	2 cut(s)	162, 163
BfaI	CTAG	3 cut(s)	141, 351, 743
BfmI	CTRYAG	1 cut(s)	178
BisI	GCNGC	5 cut(s)	184, 187, 702, 769, 795
BlnI	CCTAGG	1 cut(s)	140
BlpI	GCTNAGC	1 cut(s)	772
BlsI	GCNGC	5 cut(s)	185, 188, 703, 770, 796
Bme1390I	CCNGG	5 cut(s)	162, 163, 319, 367, 394
Bme18I	GGWCC	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	5 cut(s)	162, 163, 319, 367, 394
BmsI	GCATC	4 cut(s)	64, 203, 286, 732
BpiI	GAAGAC	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	734
Bpu1102I	GCTNAGC	1 cut(s)	772
BpuEI	CTTGAG	1 cut(s)	397
BpuMI	CCSGG	2 cut(s)	162, 163
Bsa29I	ATCGAT	1 cut(s)	726
BsaJI	CCNNGG	5 cut(s)	91, 140, 160, 161, 276
Bsc4I	CCNNNNNNNGG	6 cut(s)	109, 166, 224, 344, 399, 414
Bse1I	ACTGG	3 cut(s)	156, 514, 751
Bse3DI	GCAATG	3 cut(s)	265, 275, 338
BseBI	CCWGG	3 cut(s)	319, 367, 394
BseCI	ATCGAT	1 cut(s)	726
BseDI	CCNNGG	5 cut(s)	91, 140, 160, 161, 276
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	6 cut(s)	109, 166, 224, 344, 399, 414
BseMI	GCAATG	3 cut(s)	265, 275, 338
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	3 cut(s)	156, 514, 751
BseRI	GAGGAG	3 cut(s)	394, 397, 434
BseXI	GCAGC	5 cut(s)	195, 198, 688, 780, 781
BseYI	CCCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	780
BshFI	GGCC	1 cut(s)	392
BshVI	ATCGAT	1 cut(s)	726
BsiHKAI	GWGCWC	1 cut(s)	407
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	6 cut(s)	109, 166, 224, 344, 399, 414
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	703
BsnI	GGCC	1 cut(s)	392
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp1407I	TGTACA	1 cut(s)	561
Bsp1720I	GCTNAGC	1 cut(s)	772
BspACI	CCGC	2 cut(s)	5, 221
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	1 cut(s)	517
BspDI	ATCGAT	1 cut(s)	726
BspLI	GGNNCC	1 cut(s)	132
BsrDI	GCAATG	3 cut(s)	265, 275, 338
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	3 cut(s)	156, 514, 751
BssECI	CCNNGG	5 cut(s)	91, 140, 160, 161, 276
BssT1I	CCWWGG	3 cut(s)	91, 140, 276
Bst2UI	CCWGG	3 cut(s)	319, 367, 394
Bst4CI	ACNGT	2 cut(s)	179, 468
Bst6I	CTCTTC	3 cut(s)	6, 36, 423
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstAUI	TGTACA	1 cut(s)	561
BstC8I	GCNNGC	3 cut(s)	239, 498, 552
BstDEI	CTNAG	3 cut(s)	525, 658, 772
BstENI	CCTNNNNNAGG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNI	CCWGG	3 cut(s)	319, 367, 394
BstSCI	CCNGG	5 cut(s)	160, 161, 317, 365, 392
BstSFI	CTRYAG	1 cut(s)	178
BstV1I	GCAGC	5 cut(s)	195, 198, 688, 780, 781
BstV2I	GAAGAC	1 cut(s)	192
Bsu15I	ATCGAT	1 cut(s)	726
BsuRI	GGCC	1 cut(s)	392
BsuTUI	ATCGAT	1 cut(s)	726
BtgZI	GCGATG	1 cut(s)	473
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	3 cut(s)	239, 498, 552
CaiI	CAGNNNCTG	1 cut(s)	189
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	273
Cfr9I	CCCGGG	1 cut(s)	161
ClaI	ATCGAT	1 cut(s)	726
Csp6I	GTAC	3 cut(s)	149, 348, 562
CviAII	CATG	2 cut(s)	120, 764
CviQI	GTAC	3 cut(s)	149, 348, 562
DdeI	CTNAG	3 cut(s)	525, 658, 772
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	3 cut(s)	6, 36, 423
EarI	CTCTTC	3 cut(s)	6, 36, 423
Eco130I	CCWWGG	3 cut(s)	91, 140, 276
Eco32I	GATATC	1 cut(s)	452
Eco47I	GGWCC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	125
Eco88I	CYCGRG	1 cut(s)	161
EcoNI	CCTNNNNNAGG	1 cut(s)	107
EcoRII	CCWGG	3 cut(s)	317, 365, 392
EcoRV	GATATC	1 cut(s)	452
EcoT14I	CCWWGG	3 cut(s)	91, 140, 276
ErhI	CCWWGG	3 cut(s)	91, 140, 276
FaeI	CATG	2 cut(s)	123, 767
FaiI	YATR	4 cut(s)	121, 357, 489, 765
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	2 cut(s)	119, 763
Fnu4HI	GCNGC	5 cut(s)	184, 187, 702, 769, 795
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	5 cut(s)	184, 187, 702, 769, 795
FspBI	CTAG	3 cut(s)	141, 351, 743
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	5 cut(s)	184, 187, 702, 769, 795
GsaI	CCCAGC	1 cut(s)	347
GsuI	CTGGAG	1 cut(s)	734
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	1 cut(s)	162
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	123, 767
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	6 cut(s)	14, 86, 116, 170, 324, 570
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	5 cut(s)	107, 129, 596, 662, 750
Hpy166II	GTNNAC	2 cut(s)	149, 562
Hpy188I	TCNGA	3 cut(s)	175, 211, 716
Hpy8I	GTNNAC	2 cut(s)	149, 562
HpyAV	CCTTC	3 cut(s)	103, 144, 277
HpyCH4III	ACNGT	2 cut(s)	179, 468
HpyCH4V	TGCA	6 cut(s)	77, 194, 268, 491, 739, 797
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	3 cut(s)	525, 658, 772
Hsp92II	CATG	2 cut(s)	123, 767
HspAI	GCGC	1 cut(s)	235
LmnI	GCTCC	2 cut(s)	130, 402
Lsp1109I	GCAGC	5 cut(s)	195, 198, 688, 780, 781
LweI	GCATC	4 cut(s)	64, 203, 286, 732
MaeI	CTAG	3 cut(s)	141, 351, 743
MaeIII	GTNAC	1 cut(s)	248
MboII	GAAGA	8 cut(s)	23, 53, 118, 192, 316, 319, 440, 625
MhlI	GDGCHC	1 cut(s)	407
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	5 cut(s)	333, 359, 514, 534, 707
MluNI	TGGCCA	1 cut(s)	392
MlyI	GAGTC	3 cut(s)	23, 125, 164
Mox20I	TGGCCA	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	2 cut(s)	533, 575
MslI	CAYNNNNRTG	2 cut(s)	242, 696
Msp20I	TGGCCA	1 cut(s)	392
MspA1I	CMGCKG	2 cut(s)	189, 819
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	5 cut(s)	162, 163, 319, 367, 394
Mva1269I	GAATGC	1 cut(s)	703
MvaI	CCWGG	3 cut(s)	319, 367, 394
MwoI	GCNNNNNNNGC	1 cut(s)	497
NciI	CCSGG	2 cut(s)	162, 163
NlaIII	CATG	2 cut(s)	123, 767
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	248
PctI	GAATGC	1 cut(s)	703
PfeI	GAWTC	3 cut(s)	86, 324, 570
PflMI	CCANNNNNTGG	2 cut(s)	224, 399
PfoI	TCCNGGA	1 cut(s)	365
PkrI	GCNGC	5 cut(s)	185, 188, 703, 770, 796
PleI	GAGTC	3 cut(s)	22, 124, 164
PpsI	GAGTC	3 cut(s)	22, 124, 164
Psp6I	CCWGG	3 cut(s)	317, 365, 392
PspFI	CCCAGC	1 cut(s)	343
PspGI	CCWGG	3 cut(s)	317, 365, 392
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	273
PstNI	CAGNNNCTG	1 cut(s)	189
PvuII	CAGCTG	2 cut(s)	189, 819
RsaI	GTAC	3 cut(s)	150, 349, 563
RsaNI	GTAC	3 cut(s)	149, 348, 562
RseI	CAYNNNNRTG	2 cut(s)	242, 696
SaqAI	TTAA	2 cut(s)	533, 575
SatI	GCNGC	5 cut(s)	184, 187, 702, 769, 795
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	3 cut(s)	23, 125, 164
ScrFI	CCNGG	5 cut(s)	162, 163, 319, 367, 394
SduI	GDGCHC	1 cut(s)	407
SfaNI	GCATC	4 cut(s)	64, 203, 286, 732
SfcI	CTRYAG	1 cut(s)	178
SinI	GGWCC	1 cut(s)	273
SmaI	CCCGGG	1 cut(s)	163
SmiMI	CAYNNNNRTG	2 cut(s)	242, 696
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	5 cut(s)	333, 359, 514, 534, 707
SsiI	CCGC	2 cut(s)	5, 221
SspMI	CTAG	3 cut(s)	141, 351, 743
StyD4I	CCNGG	5 cut(s)	160, 161, 317, 365, 392
StyI	CCWWGG	3 cut(s)	91, 140, 276
TaaI	ACNGT	2 cut(s)	179, 468
TaqI	TCGA	1 cut(s)	726
TasI	AATT	5 cut(s)	333, 359, 514, 534, 707
TatI	WGTACW	2 cut(s)	148, 561
TfiI	GAWTC	3 cut(s)	86, 324, 570
Tru1I	TTAA	2 cut(s)	533, 575
Tru9I	TTAA	2 cut(s)	533, 575
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	5 cut(s)	183, 186, 701, 768, 794
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	4 cut(s)	372, 441, 476, 626
TspGWI	ACGGA	1 cut(s)	182
TspMI	CCCGGG	1 cut(s)	161
TspRI	CASTG	1 cut(s)	24
Van91I	CCANNNNNTGG	2 cut(s)	224, 399
VpaK11BI	GGWCC	1 cut(s)	273
XagI	CCTNNNNNAGG	1 cut(s)	107
XmaI	CCCGGG	1 cut(s)	161
XmaJI	CCTAGG	1 cut(s)	140
XspI	CTAG	3 cut(s)	141, 351, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.