Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007384

Physical Location & Seq

Genomic Coordinates Reverse (-)

26190592 .. 26193237

Gene Structure 2646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGCTGTTGAAGAGATGGAGAAGAAGATCAAAGGAAGCCAAGAGACGGAGCTACATAAAAACGACTTATCAATCGAAGACCCATCTCCAAGATGCGTGCTTGAAATTCCGGTAATGAGTTCAGATTCCGATAACAGCAGCAGTTGTAGCTCGTGTTCTCCTGATAAATCATCGTCGCCATTATCAACAACTCCTCCAAACGTTTCGTCTTTTCATCAATGGAACAAGATGATCGAATCCATCAAGAAGAAATCAATTAGGAGATTCTCTGTCATTCCTCTCCTCGCTAGCTACGAGCTCACCCGCAAAAAGAAACAACCGAAACTATCTCCTTGTTCAGAAAACGACTTCGATTGTGATCAAATCCTCGTCGCTAAACCTTCGTGGCGTAATTTCACCTTCGACGAACTCGTTGCCGCCACCGACAATTTTAATCCCGAGAACATGATTGGGAAAGGAGGACATGCGGAGGTGTACAAAGGGGTTTTACCGGACGGAGAGACTGTGGCGATCAAGAAGCTGACGAGACATGCAAAGGAAGTAGAAGAACGAGTCAGTGATTTCTTATCGGAGCTTGGGATAATCGCACATGTTAACCATCCAAACGCAGCTAGGCTTCGTGGTTTCAGTTGTGATCGCGGTTTGCATTTTGTGCTTGAGTACTCTTCTCATGGCAGTCTTGCTTCTCTACTCTTTGGATCAGAGGAGTGTTTGGATTGGAAGAAACGGTATAAAGTGGCTATGGGTATAGCTGATGGTTTGAGTTATCTTCATAACGATTGCCCTCGACGGATTATTCACCGAGACATCAAAGCTTCCAACATTTTGCTCTCTCAAGACTACGAAGCTCAGATTTCGGATTTTGGACTAGCTAAGTGGCTCCCAGAGCATTGGCCTCATCACATTGTTTTCCCTATCGAAGGCACATTCGGATATCTAGCTCCAGAGTACTTCATGCACGGGATTGTCGATGAGAAGACGGATGTTTTTGCTTTTGGTGTATTGCTTCTAGAGATCATAACTGGTCGTCGAGCTGTTGATACCGATAGCCGGCAAAGCATAGTTATGTGGGCAAAACCTCTTCTGGAGAAGAACAACATGGAAGAAATAGTTGATCCTCAGCTAGGCAATGACTTTGATGAAACCGAGATGAAACGAGTGATGCAAACAGCTTCAATGTGCATACACCATGTATCCACTATGCGTCCTGACATGAACCGGTTGGTTCAGCTGTTGCGCGGAGATGACCAGTTAGCTGAACAAAAACCAGGTGGAGCAAGAACAGTGAGTCTCGACGATTGCGACTTAGATCACACCTCTTCCTCTTACCTTAACGATCTCACTCGACATAGACAGCTCTTAATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009623 GO:0009719 GO:0009723 GO:0009725 GO:0009814 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0032870 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

456

Amino Acids

51.55

Weight (kDa)

5.66

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	146 - 356	4e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	147 - 411	1.1e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10520 AT5G10520 AT5G65530
fragaria_vesca	FvH4_1g19500 FvH4_1g19500 FvH4_1g19500 FvH4_1g19500 FvH4_1g19500
malus_domestica	MD01G1040800.v1.1 MD15G1310700.v1.1
prunus_persica	Prupe.6G203200_v2.0.a1 Prupe.6G203200_v2.0.a1
pyrus_communis	pycom01g06840 pycom15g27430
rosa_chinensis	RchiOBHm_Chr2g0111001
rosa_laevigata	RLG00000017857
rosa_multiflora	Rmu_co8060254.1_g000001 Rmu_sc0003994.1_g000009
rosa_roxburghii	Rroxscaffold_2G00132750
rosa_rugosa	Rorug02G0170500
rosa_samantha	Rh2AG222500 Rh2BG234500 Rh2CG225800 Rh2DG230400
rosa_wichuraiana	Rw2G017190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	639, 1239
AciI	CCGC	5 cut(s)	304, 417, 467, 639, 1239
AclI	AACGTT	1 cut(s)	201
AclWI	GGATC	2 cut(s)	706, 1109
AcsI	RAATTY	1 cut(s)	105
AfaI	GTAC	3 cut(s)	476, 662, 950
AfiI	CCNNNNNNNGG	4 cut(s)	46, 920, 1050, 1124
AflIII	ACRYGT	1 cut(s)	589
AgeI	ACCGGT	1 cut(s)	1218
AgsI	TTSAA	3 cut(s)	11, 104, 1176
AjnI	CCWGG	1 cut(s)	1267
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	5 cut(s)	38, 494, 520, 798, 1295
AlwI	GGATC	2 cut(s)	706, 1109
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	1 cut(s)	893
ApeKI	GCWGC	2 cut(s)	138, 608
ApoI	RAATTY	1 cut(s)	105
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AsiGI	ACCGGT	1 cut(s)	1218
AspLEI	GCGC	1 cut(s)	1239
AsuHPI	GGTGA	3 cut(s)	292, 388, 791
AsuNHI	GCTAGC	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	300
BauI	CACGAG	1 cut(s)	151
BbsI	GAAGAC	2 cut(s)	84, 983
Bbv12I	GWGCWC	1 cut(s)	300
BbvCI	CCTCAGC	1 cut(s)	1119
BbvI	GCAGC	2 cut(s)	150, 620
BccI	CCATC	5 cut(s)	10, 91, 248, 606, 749
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciT130I	CCWGG	1 cut(s)	1269
BciVI	GTATCC	1 cut(s)	1204
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	5 cut(s)	38, 494, 520, 798, 1295
BfaI	CTAG	6 cut(s)	288, 612, 869, 938, 1010, 1124
BfuI	GTATCC	1 cut(s)	1204
BisI	GCNGC	3 cut(s)	139, 417, 609
BlsI	GCNGC	3 cut(s)	140, 418, 610
BmcAI	AGTACT	2 cut(s)	662, 950
Bme1390I	CCNGG	1 cut(s)	1269
BmeT110I	CYCGRG	1 cut(s)	437
BmiI	GGNNCC	1 cut(s)	881
BmrFI	CCNGG	1 cut(s)	1269
BmsI	GCATC	2 cut(s)	83, 1152
BmtI	GCTAGC	1 cut(s)	291
BpiI	GAAGAC	2 cut(s)	84, 983
BpmI	CTGGAG	2 cut(s)	927, 1106
Bpu10I	CCTNAGC	1 cut(s)	1119
BpuEI	CTTGAG	2 cut(s)	677, 819
BsaBI	GATNNNNATC	1 cut(s)	357
BsaWI	WCCGGW	3 cut(s)	109, 490, 1218
BsaXI	ACNNNNNCTCC	4 cut(s)	178, 208, 489, 519
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 920, 1050, 1124
Bse118I	RCCGGY	2 cut(s)	1050, 1218
Bse1I	ACTGG	2 cut(s)	1027, 1249
Bse3DI	GCAATG	1 cut(s)	1135
Bse8I	GATNNNNATC	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	1269
BseGI	GGATG	2 cut(s)	598, 988
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	4 cut(s)	46, 920, 1050, 1124
BseMI	GCAATG	1 cut(s)	1135
BseMII	CTCAG	2 cut(s)	863, 1133
BseNI	ACTGG	2 cut(s)	1027, 1249
BseRI	GAGGAG	3 cut(s)	183, 272, 719
BseXI	GCAGC	2 cut(s)	150, 620
Bsh1236I	CGCG	2 cut(s)	639, 1239
BshFI	GGCC	1 cut(s)	895
BshTI	ACCGGT	1 cut(s)	1218
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	4 cut(s)	110, 491, 1051, 1219
BslI	CCNNNNNNNGG	4 cut(s)	46, 920, 1050, 1124
BsmAI	GTCTC	5 cut(s)	38, 494, 520, 798, 1295
BsmBI	CGTCTC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	895
BsoBI	CYCGRG	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	474
BspACI	CCGC	5 cut(s)	304, 417, 467, 639, 1239
BspANI	GGCC	1 cut(s)	895
BspCNI	CTCAG	2 cut(s)	862, 1132
BspFNI	CGCG	2 cut(s)	639, 1239
BspLI	GGNNCC	1 cut(s)	881
BspOI	GCTAGC	1 cut(s)	291
BspPI	GGATC	2 cut(s)	706, 1109
BsrDI	GCAATG	1 cut(s)	1135
BsrFI	RCCGGY	2 cut(s)	1050, 1218
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	1027, 1249
BssAI	RCCGGY	2 cut(s)	1050, 1218
BssSI	CACGAG	1 cut(s)	151
Bst2BI	CACGAG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	1269
Bst4CI	ACNGT	3 cut(s)	505, 729, 1285
Bst6I	CTCTTC	4 cut(s)	6, 670, 1086, 1324
BstAPI	GCANNNNNTGC	1 cut(s)	652
BstAUI	TGTACA	1 cut(s)	474
BstC8I	GCNNGC	3 cut(s)	98, 289, 1052
BstDEI	CTNAG	4 cut(s)	849, 873, 1119, 1306
BstENI	CCTNNNNNAGG	2 cut(s)	918, 1122
BstF5I	GGATG	2 cut(s)	598, 988
BstFNI	CGCG	2 cut(s)	639, 1239
BstHHI	GCGC	1 cut(s)	1239
BstMAI	GTCTC	5 cut(s)	38, 494, 520, 798, 1295
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 652, 886, 1056
BstNI	CCWGG	1 cut(s)	1269
BstNSI	RCATGY	3 cut(s)	467, 533, 593
BstSCI	CCNGG	1 cut(s)	1267
BstUI	CGCG	2 cut(s)	639, 1239
BstV1I	GCAGC	2 cut(s)	150, 620
BstV2I	GAAGAC	2 cut(s)	84, 983
BstXI	CCANNNNNNTGG	1 cut(s)	891
BsuI	GTATCC	1 cut(s)	1204
BsuRI	GGCC	1 cut(s)	895
BtsCI	GGATG	2 cut(s)	598, 988
BtsIMutI	CAGTG	2 cut(s)	562, 1290
Cac8I	GCNNGC	3 cut(s)	98, 289, 1052
CfoI	GCGC	1 cut(s)	1239
Cfr10I	RCCGGY	2 cut(s)	1050, 1218
CseI	GACGC	1 cut(s)	1193
CsiI	ACCWGGT	1 cut(s)	1267
Csp6I	GTAC	3 cut(s)	475, 661, 949
CspAI	ACCGGT	1 cut(s)	1218
CviAII	CATG	9 cut(s)	445, 464, 530, 590, 671, 955, 1099, 1190, 1213
CviQI	GTAC	3 cut(s)	475, 661, 949
DdeI	CTNAG	4 cut(s)	849, 873, 1119, 1306
Eam1104I	CTCTTC	4 cut(s)	6, 670, 1086, 1324
EarI	CTCTTC	4 cut(s)	6, 670, 1086, 1324
Ecl136II	GAGCTC	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	935
Eco53kI	GAGCTC	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	298
EcoNI	CCTNNNNNAGG	2 cut(s)	918, 1122
EcoRII	CCWGG	1 cut(s)	1267
EcoRV	GATATC	1 cut(s)	935
EcoT38I	GRGCYC	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	9 cut(s)	448, 467, 533, 593, 674, 958, 1102, 1193, 1216
FatI	CATG	9 cut(s)	444, 463, 529, 589, 670, 954, 1098, 1189, 1212
FauI	CCCGC	1 cut(s)	311
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	139, 417, 609
FokI	GGATG	2 cut(s)	585, 995
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	3 cut(s)	139, 417, 609
FspBI	CTAG	6 cut(s)	288, 612, 869, 938, 1010, 1124
GlaI	GCGC	1 cut(s)	1238
GluI	GCNGC	3 cut(s)	139, 417, 609
GsuI	CTGGAG	2 cut(s)	927, 1106
HaeIII	GGCC	1 cut(s)	895
HapII	CCGG	4 cut(s)	110, 491, 1051, 1219
HgaI	GACGC	1 cut(s)	1193
HhaI	GCGC	1 cut(s)	1239
Hin1II	CATG	9 cut(s)	448, 467, 533, 593, 674, 958, 1102, 1193, 1216
Hin6I	GCGC	1 cut(s)	1237
HinP1I	GCGC	1 cut(s)	1237
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	813
HinfI	GANTC	5 cut(s)	125, 236, 264, 552, 1288
HpaI	GTTAAC	1 cut(s)	595
HpaII	CCGG	4 cut(s)	110, 491, 1051, 1219
HphI	GGTGA	3 cut(s)	292, 388, 791
Hpy166II	GTNNAC	2 cut(s)	475, 595
Hpy188I	TCNGA	8 cut(s)	124, 130, 340, 571, 703, 852, 859, 932
Hpy8I	GTNNAC	2 cut(s)	475, 595
Hpy99I	CGWCG	6 cut(s)	178, 374, 407, 792, 1032, 1298
HpyAV	CCTTC	3 cut(s)	390, 409, 914
HpyCH4III	ACNGT	3 cut(s)	505, 729, 1285
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	5 cut(s)	533, 646, 958, 1165, 1182
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 652, 886, 1056
HpyF3I	CTNAG	4 cut(s)	849, 873, 1119, 1306
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	9 cut(s)	448, 467, 533, 593, 674, 958, 1102, 1193, 1216
HspAI	GCGC	1 cut(s)	1237
KroI	GCCGGC	1 cut(s)	1050
KroNI	GCCGGC	1 cut(s)	1052
Ksp22I	TGATCA	1 cut(s)	358
KspAI	GTTAAC	1 cut(s)	595
LmnI	GCTCC	5 cut(s)	49, 571, 885, 946, 1274
Lsp1109I	GCAGC	2 cut(s)	150, 620
LweI	GCATC	2 cut(s)	83, 1152
MabI	ACCWGGT	1 cut(s)	1267
MaeI	CTAG	6 cut(s)	288, 612, 869, 938, 1010, 1124
MaeII	ACGT	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	4 cut(s)	105, 255, 391, 427
MlyI	GAGTC	2 cut(s)	561, 1297
MmeI	TCCRAC	1 cut(s)	843
MroNI	GCCGGC	1 cut(s)	1050
MseI	TTAA	4 cut(s)	432, 594, 1332, 1361
MslI	CAYNNNNRTG	1 cut(s)	1064
MspA1I	CMGCKG	1 cut(s)	1231
MspI	CCGG	4 cut(s)	110, 491, 1051, 1219
MspR9I	CCNGG	1 cut(s)	1269
MvaI	CCWGG	1 cut(s)	1269
MvnI	CGCG	2 cut(s)	639, 1239
MwoI	GCNNNNNNNGC	4 cut(s)	147, 652, 886, 1056
NaeI	GCCGGC	1 cut(s)	1052
NgoMIV	GCCGGC	1 cut(s)	1050
NheI	GCTAGC	1 cut(s)	287
NlaIII	CATG	9 cut(s)	448, 467, 533, 593, 674, 958, 1102, 1193, 1216
NlaIV	GGNNCC	1 cut(s)	881
NspI	RCATGY	3 cut(s)	467, 533, 593
PciI	ACATGT	1 cut(s)	589
PcsI	WCGNNNNNNNCGW	4 cut(s)	291, 408, 966, 1299
PdiI	GCCGGC	1 cut(s)	1052
PfeI	GAWTC	3 cut(s)	125, 236, 264
PinAI	ACCGGT	1 cut(s)	1218
PkrI	GCNGC	3 cut(s)	140, 418, 610
PleI	GAGTC	2 cut(s)	560, 1296
PpsI	GAGTC	2 cut(s)	560, 1296
PscI	ACATGT	1 cut(s)	589
Psp124BI	GAGCTC	1 cut(s)	300
Psp1406I	AACGTT	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	1267
PspGI	CCWGG	1 cut(s)	1267
PspN4I	GGNNCC	1 cut(s)	881
PsrI	GAACNNNNNNTAC	2 cut(s)	139, 171
PvuII	CAGCTG	1 cut(s)	1231
RsaI	GTAC	3 cut(s)	476, 662, 950
RsaNI	GTAC	3 cut(s)	475, 661, 949
RseI	CAYNNNNRTG	1 cut(s)	1064
SacI	GAGCTC	1 cut(s)	300
SaqAI	TTAA	4 cut(s)	432, 594, 1332, 1361
SatI	GCNGC	3 cut(s)	139, 417, 609
ScaI	AGTACT	2 cut(s)	662, 950
SchI	GAGTC	2 cut(s)	561, 1297
ScrFI	CCNGG	1 cut(s)	1269
SduI	GDGCHC	1 cut(s)	300
SexAI	ACCWGGT	1 cut(s)	1267
SfaNI	GCATC	2 cut(s)	83, 1152
SmiMI	CAYNNNNRTG	1 cut(s)	1064
SmlI	CTYRAG	2 cut(s)	656, 834
SmoI	CTYRAG	2 cut(s)	656, 834
Sse9I	AATT	4 cut(s)	105, 255, 391, 427
SsiI	CCGC	5 cut(s)	304, 417, 467, 639, 1239
SspMI	CTAG	6 cut(s)	288, 612, 869, 938, 1010, 1124
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	1267
TaaI	ACNGT	3 cut(s)	505, 729, 1285
TaiI	ACGT	1 cut(s)	204
TasI	AATT	4 cut(s)	105, 255, 391, 427
TatI	WGTACW	3 cut(s)	474, 660, 948
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	3 cut(s)	125, 236, 264
Tru1I	TTAA	4 cut(s)	432, 594, 1332, 1361
Tru9I	TTAA	4 cut(s)	432, 594, 1332, 1361
TscAI	CASTG	2 cut(s)	562, 1290
TseI	GCWGC	2 cut(s)	138, 608
TspDTI	ATGAA	6 cut(s)	203, 761, 943, 1155, 1166, 1229
TspGWI	ACGGA	4 cut(s)	62, 510, 805, 995
TspRI	CASTG	2 cut(s)	562, 1290
XagI	CCTNNNNNAGG	2 cut(s)	918, 1122
XapI	RAATTY	1 cut(s)	105
XbaI	TCTAGA	1 cut(s)	1009
XceI	RCATGY	3 cut(s)	467, 533, 593
XspI	CTAG	6 cut(s)	288, 612, 869, 938, 1010, 1124
ZrmI	AGTACT	2 cut(s)	662, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.