MD01G1040800.v1.1

Receptor-like cytosolic serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
13714183 .. 13717129
2947 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1040800.v1.1.491

Sequence Viewer

Length: 1422 bp
ATGACGGCGGAAGAGACCGTAGGAGAAACGAAAGGAAACCCAGAAATGGAATCAGAGTCACAAGGCGATCTGAGGAAGATGGAGTCGTGTGAGGACAAGCCGTCACCGAGGGGCGTGTTGGAAATCCCCGTTACGGACTCGGACTACAGCGGCAGCAGCTGCGGCACATCTTCTTGTTCCGAAAAGACGATGGGCCAGACGCTAATGCGAGACATCAGCATTGGGTTGCAGATGAGAGGCAAGGGAATGTTCGATGCCTTGAAGAAGAAGTCAGCGAGGCGGTTTTCGACCATTCCAGTATTGGGTGCCAGCTATGAACTTTCCAGGAGGAACTTGAGGAGGAGACTGGCTCGGATTTGGAACGCCGAGGATGAGGAGGAGGAAGGAGCTGATGGGATGTCGGTTACGAAGCCGTCATGGAGGAACTTTGATTACGCTGAGCTTGCTGCTGCTACTGCCAATTTCAAACCTGAGAACCTGATTGGCAAAGGTGGGCAAGCAGAAGTTTACAAGGGGTTCTTATCCAATGGTACAATTGTAGCAGTCAAGAGGCTAATGAAGAAAGAGAAAGAGAAAGAAAACGAGGATCGAGTTGGCGATTTCTTGGCAGAGGTTGGGATTATTGCACACATAAGACACCCGAATGCTGCTCGCCTACTTGGCTTTGGCATCGACAGTGGTTTGCACCTTGTCCTGCAATTTTCCCCACACGGCAGCTTAGCTTCTCTACTCTTTGGTACAGCAGAATGTATGGATTGGAAGATCAGGTTTAAGGTAGCAATTGGGATAGCAGAAGGTTTGCGATATCTCCATCACGATTGCCACAGGCGCATCATTCACCGGGACATCAAGGCCTCTAATATATTACTAACCGAAGATTATGAAGCTCAGATATCTGATTTCGGACTAGCAAAGTGGCTCCCAGAAAAATGGACTCACCATGTTGTATTCCCTATTGAAGGCACATTCGGGTACTTGTCTCCAGAGTACTTTATGCATGGAATTGTCGACGAGAAGACTGATGTGTTTGCATATGGGGTTTTATTACTGGAGCTCATAACAGGTCGCCGTGCAGTTGATTCAACTCAGCAAAGCCTTGTGATCTGGGCAAAGCCGCTTCTAGATGCAAGTAATATGAAGGAGCTAGCAGATCCTCTGTTCGAAGATGCATATGATCCGATTGAGATGAAAAGAGCCATGGTGACGGCTTCAATGTGCATCAGTCATCAATCCACAAGGCGTCCGTATATGAATCGGGTAGTGCAGATGCTAAAGGGAGAGGATGGCGTCGCAGATCAGTTGAGACAGAAATCTACAGCAGTGAGATCACTGGTTCTAGAGTCTTGTGACTTGGAAGACTACACTTGTTCGAATTACCTCAGCGATCTCAACCGCCACCGGCAACTCGTATTGGATCAGTAG

Protein Analysis

474

Amino Acids

53.12

Weight (kDa)

5.88

Isoelectric Point (pI)

49.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 157 - 364 1.3e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 159 - 424 5.1e-38 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 305
AccI GTMKAC 1 cut(s) 1008
AciI CCGC 6 cut(s) 8, 150, 162, 280, 1115, 1393
AclWI GGATC 3 cut(s) 594, 1145, 1169
AcyI GRCGYC 2 cut(s) 1240, 1287
AfaI GTAC 4 cut(s) 532, 739, 974, 989
AfiI CCNNNNNNNGG 4 cut(s) 46, 133, 302, 959
AgsI TTSAA 5 cut(s) 262, 466, 959, 1083, 1212
AhdI GACNNNNNGTC 1 cut(s) 100
AjnI CCWGG 1 cut(s) 323
AluBI AGCT 9 cut(s) 159, 312, 389, 442, 717, 722, 887, 1054, 1144
AluI AGCT 9 cut(s) 159, 312, 389, 442, 717, 722, 887, 1054, 1144
Alw21I GWGCWC 1 cut(s) 1056
Alw26I GTCTC 5 cut(s) 8, 204, 337, 984, 1297
AlwI GGATC 3 cut(s) 594, 1145, 1169
AlwNI CAGNNNCTG 1 cut(s) 159
AoxI GGCC 2 cut(s) 193, 852
ApeKI GCWGC 7 cut(s) 153, 156, 159, 446, 449, 647, 714
AspLEI GCGC 1 cut(s) 831
AspS9I GGNCC 1 cut(s) 193
AsuC2I CCSGG 1 cut(s) 842
AsuHPI GGTGA 4 cut(s) 96, 830, 929, 1213
AsuII TTCGAA 2 cut(s) 1161, 1370
AsuNHI GCTAGC 1 cut(s) 1144
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 1056
BbsI GAAGAC 2 cut(s) 1022, 1362
Bbv12I GWGCWC 1 cut(s) 1056
BbvCI CCTCAGC 1 cut(s) 1379
BbvI GCAGC 7 cut(s) 146, 165, 168, 433, 436, 634, 726
BccI CCATC 5 cut(s) 73, 184, 386, 819, 1277
BceAI ACGGC 6 cut(s) 21, 85, 397, 727, 1053, 1221
BciT130I CCWGG 1 cut(s) 325
BcnI CCSGG 1 cut(s) 842
BcoDI GTCTC 5 cut(s) 8, 204, 337, 984, 1297
BfaI CTAG 4 cut(s) 908, 1121, 1145, 1337
BfmI CTRYAG 2 cut(s) 145, 1314
BglI GCCNNNNNGGC 1 cut(s) 660
BlpI GCTNAGC 2 cut(s) 438, 718
BmcAI AGTACT 1 cut(s) 989
Bme1390I CCNGG 2 cut(s) 325, 842
BmeRI GACNNNNNGTC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 2 cut(s) 307, 920
BmrFI CCNGG 2 cut(s) 325, 842
BmsI GCATC 7 cut(s) 244, 678, 840, 1114, 1156, 1227, 1257
BmtI GCTAGC 1 cut(s) 1148
BpiI GAAGAC 2 cut(s) 1022, 1362
BplI GAGNNNNNCTC 2 cut(s) 334, 366
BpmI CTGGAG 2 cut(s) 966, 1070
Bpu10I CCTNAGC 1 cut(s) 1379
Bpu1102I GCTNAGC 2 cut(s) 438, 718
Bpu14I TTCGAA 2 cut(s) 1161, 1370
BpuEI CTTGAG 1 cut(s) 355
BpuMI CCSGG 1 cut(s) 842
BsaHI GRCGYC 2 cut(s) 1240, 1287
BsaI GGTCTC 1 cut(s) 8
BsaJI CCNNGG 3 cut(s) 107, 366, 1197
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 133, 302, 959
Bse118I RCCGGY 1 cut(s) 1398
Bse1I ACTGG 4 cut(s) 296, 351, 1053, 1335
BseBI CCWGG 1 cut(s) 325
BseDI CCNNGG 3 cut(s) 107, 366, 1197
BseGI GGATG 3 cut(s) 376, 402, 1288
BseLI CCNNNNNNNGG 4 cut(s) 46, 133, 302, 959
BseMII CTCAG 6 cut(s) 62, 429, 462, 902, 1100, 1393
BseNI ACTGG 4 cut(s) 296, 351, 1053, 1335
BseRI GAGGAG 4 cut(s) 352, 355, 389, 392
BseXI GCAGC 7 cut(s) 146, 165, 168, 433, 436, 634, 726
BsgI GTGCAG 2 cut(s) 1092, 1283
BshFI GGCC 2 cut(s) 195, 854
BshNI GGYRCC 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 1056
BsiSI CCGG 2 cut(s) 841, 1399
BslFI GGGAC 1 cut(s) 857
BslI CCNNNNNNNGG 4 cut(s) 46, 133, 302, 959
BsmAI GTCTC 5 cut(s) 8, 204, 337, 984, 1297
BsmFI GGGAC 1 cut(s) 857
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 2 cut(s) 195, 854
Bso31I GGTCTC 1 cut(s) 8
Bsp119I TTCGAA 2 cut(s) 1161, 1370
Bsp1286I GDGCHC 1 cut(s) 1056
Bsp1720I GCTNAGC 2 cut(s) 438, 718
Bsp19I CCATGG 1 cut(s) 1197
BspACI CCGC 6 cut(s) 8, 150, 162, 280, 1115, 1393
BspANI GGCC 2 cut(s) 195, 854
BspCNI CTCAG 6 cut(s) 63, 430, 463, 901, 1099, 1392
BspLI GGNNCC 2 cut(s) 307, 920
BspOI GCTAGC 1 cut(s) 1148
BspPI GGATC 3 cut(s) 594, 1145, 1169
BspT104I TTCGAA 2 cut(s) 1161, 1370
BspT107I GGYRCC 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 8
BsrFI RCCGGY 1 cut(s) 1398
BsrI ACTGG 4 cut(s) 296, 351, 1053, 1335
BssAI RCCGGY 1 cut(s) 1398
BssECI CCNNGG 3 cut(s) 107, 366, 1197
BssNI GRCGYC 2 cut(s) 1240, 1287
BssT1I CCWWGG 1 cut(s) 1197
Bst2UI CCWGG 1 cut(s) 325
Bst4CI ACNGT 2 cut(s) 19, 677
Bst6I CTCTTC 1 cut(s) 6
BstACI GRCGYC 2 cut(s) 1240, 1287
BstAPI GCANNNNNTGC 1 cut(s) 159
BstBI TTCGAA 2 cut(s) 1161, 1370
BstC8I GCNNGC 5 cut(s) 310, 444, 498, 652, 1146
BstDEI CTNAG 7 cut(s) 71, 438, 471, 718, 888, 1086, 1379
BstDSI CCRYGG 1 cut(s) 1197
BstENI CCTNNNNNAGG 1 cut(s) 957
BstF5I GGATG 3 cut(s) 376, 402, 1288
BstHHI GCGC 1 cut(s) 831
BstMAI GTCTC 5 cut(s) 8, 204, 337, 984, 1297
BstMWI GCNNNNNNNGC 7 cut(s) 156, 159, 162, 443, 455, 660, 828
BstNI CCWGG 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 323, 840
BstSFI CTRYAG 2 cut(s) 145, 1314
BstV1I GCAGC 7 cut(s) 146, 165, 168, 433, 436, 634, 726
BstV2I GAAGAC 2 cut(s) 1022, 1362
BstX2I RGATCY 1 cut(s) 1150
BstXI CCANNNNNNTGG 1 cut(s) 930
BstYI RGATCY 1 cut(s) 1150
BsuRI GGCC 2 cut(s) 195, 854
BtgI CCRYGG 1 cut(s) 1197
BtsCI GGATG 3 cut(s) 376, 402, 1288
BtsI GCAGTG 1 cut(s) 1326
BtsIMutI CAGTG 3 cut(s) 682, 1326, 1328
Cac8I GCNNGC 5 cut(s) 310, 444, 498, 652, 1146
CaiI CAGNNNCTG 1 cut(s) 159
CfoI GCGC 1 cut(s) 831
Cfr10I RCCGGY 1 cut(s) 1398
Cfr13I GGNCC 1 cut(s) 193
CseI GACGC 3 cut(s) 208, 1229, 1276
Csp6I GTAC 4 cut(s) 531, 738, 973, 988
CviAII CATG 4 cut(s) 417, 941, 998, 1198
CviQI GTAC 4 cut(s) 531, 738, 973, 988
DdeI CTNAG 7 cut(s) 71, 438, 471, 718, 888, 1086, 1379
DriI GACNNNNNGTC 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 6
Eam1105I GACNNNNNGTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 6
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 1054
Eco130I CCWWGG 1 cut(s) 1197
Eco147I AGGCCT 1 cut(s) 854
Eco24I GRGCYC 1 cut(s) 1056
Eco31I GGTCTC 1 cut(s) 8
Eco32I GATATC 2 cut(s) 806, 894
Eco53kI GAGCTC 1 cut(s) 1054
EcoICRI GAGCTC 1 cut(s) 1054
EcoNI CCTNNNNNAGG 1 cut(s) 957
EcoRII CCWGG 1 cut(s) 323
EcoRV GATATC 2 cut(s) 806, 894
EcoT14I CCWWGG 1 cut(s) 1197
EcoT22I ATGCAT 2 cut(s) 999, 1171
EcoT38I GRGCYC 1 cut(s) 1056
ErhI CCWWGG 1 cut(s) 1197
FaeI CATG 4 cut(s) 420, 944, 1001, 1201
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FaqI GGGAC 1 cut(s) 857
FatI CATG 4 cut(s) 416, 940, 997, 1197
FauNDI CATATG 2 cut(s) 1033, 1171
FblI GTMKAC 1 cut(s) 1008
FokI GGATG 3 cut(s) 383, 409, 1295
FriOI GRGCYC 1 cut(s) 1056
FspBI CTAG 4 cut(s) 908, 1121, 1145, 1337
GlaI GCGC 1 cut(s) 830
GsuI CTGGAG 2 cut(s) 966, 1070
HaeIII GGCC 2 cut(s) 195, 854
HapII CCGG 2 cut(s) 841, 1399
HgaI GACGC 3 cut(s) 208, 1229, 1276
HhaI GCGC 1 cut(s) 831
Hin1I GRCGYC 2 cut(s) 1240, 1287
Hin1II CATG 4 cut(s) 420, 944, 1001, 1201
Hin6I GCGC 1 cut(s) 829
HinP1I GCGC 1 cut(s) 829
HincII GTYRAC 1 cut(s) 1009
HindII GTYRAC 1 cut(s) 1009
HinfI GANTC 8 cut(s) 50, 56, 83, 137, 934, 1079, 1252, 1340
HpaII CCGG 2 cut(s) 841, 1399
HphI GGTGA 4 cut(s) 96, 830, 929, 1213
Hpy166II GTNNAC 2 cut(s) 508, 1009
Hpy188I TCNGA 9 cut(s) 55, 72, 142, 181, 354, 891, 898, 905, 1179
Hpy188III TCNNGA 5 cut(s) 547, 815, 983, 1121, 1337
Hpy8I GTNNAC 2 cut(s) 508, 1009
Hpy99I CGWCG 2 cut(s) 1013, 1292
HpyAV CCTTC 4 cut(s) 377, 788, 953, 1132
HpyCH4III ACNGT 2 cut(s) 19, 677
HpyF10VI GCNNNNNNNGC 7 cut(s) 156, 159, 162, 443, 455, 660, 828
HpyF3I CTNAG 7 cut(s) 71, 438, 471, 718, 888, 1086, 1379
Hsp92I GRCGYC 2 cut(s) 1240, 1287
Hsp92II CATG 4 cut(s) 420, 944, 1001, 1201
HspAI GCGC 1 cut(s) 829
LmnI GCTCC 4 cut(s) 386, 924, 1051, 1141
Lsp1109I GCAGC 7 cut(s) 146, 165, 168, 433, 436, 634, 726
LweI GCATC 7 cut(s) 244, 678, 840, 1114, 1156, 1227, 1257
MaeI CTAG 4 cut(s) 908, 1121, 1145, 1337
MaeIII GTNAC 6 cut(s) 57, 102, 130, 403, 1201, 1346
MfeI CAATTG 2 cut(s) 534, 780
MflI RGATCY 1 cut(s) 1150
MhlI GDGCHC 1 cut(s) 1056
MluCI AATT 6 cut(s) 460, 534, 698, 780, 1002, 1372
MlyI GAGTC 5 cut(s) 65, 92, 131, 928, 1349
MmeI TCCRAC 1 cut(s) 99
Mph1103I ATGCAT 2 cut(s) 999, 1171
MseI TTAA 1 cut(s) 771
MslI CAYNNNNRTG 1 cut(s) 642
MspA1I CMGCKG 2 cut(s) 150, 159
MspI CCGG 2 cut(s) 841, 1399
MspR9I CCNGG 2 cut(s) 325, 842
MunI CAATTG 2 cut(s) 534, 780
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 1 cut(s) 325
MwoI GCNNNNNNNGC 7 cut(s) 156, 159, 162, 443, 455, 660, 828
NciI CCSGG 1 cut(s) 842
NcoI CCATGG 1 cut(s) 1197
NdeI CATATG 2 cut(s) 1033, 1171
NheI GCTAGC 1 cut(s) 1144
NlaIII CATG 4 cut(s) 420, 944, 1001, 1201
NlaIV GGNNCC 2 cut(s) 307, 920
NmeAIII GCCGAG 1 cut(s) 391
NmuCI GTSAC 4 cut(s) 57, 102, 1201, 1346
NsiI ATGCAT 2 cut(s) 999, 1171
NspV TTCGAA 2 cut(s) 1161, 1370
PceI AGGCCT 1 cut(s) 854
PctI GAATGC 1 cut(s) 649
PfeI GAWTC 3 cut(s) 50, 1079, 1252
PfoI TCCNGGA 1 cut(s) 323
PleI GAGTC 5 cut(s) 64, 91, 131, 928, 1348
PpsI GAGTC 5 cut(s) 64, 91, 131, 928, 1348
Psp124BI GAGCTC 1 cut(s) 1056
Psp6I CCWGG 1 cut(s) 323
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 2 cut(s) 307, 920
PspPI GGNCC 1 cut(s) 193
PsrI GAACNNNNNNTAC 2 cut(s) 416, 448
PstNI CAGNNNCTG 1 cut(s) 159
PsuI RGATCY 1 cut(s) 1150
PvuII CAGCTG 1 cut(s) 159
RsaI GTAC 4 cut(s) 532, 739, 974, 989
RsaNI GTAC 4 cut(s) 531, 738, 973, 988
RseI CAYNNNNRTG 1 cut(s) 642
SacI GAGCTC 1 cut(s) 1056
SalI GTCGAC 1 cut(s) 1007
SaqAI TTAA 1 cut(s) 771
Sau96I GGNCC 1 cut(s) 193
ScaI AGTACT 1 cut(s) 989
SchI GAGTC 5 cut(s) 65, 92, 131, 928, 1349
ScrFI CCNGG 2 cut(s) 325, 842
SduI GDGCHC 1 cut(s) 1056
SfaNI GCATC 7 cut(s) 244, 678, 840, 1114, 1156, 1227, 1257
SfcI CTRYAG 2 cut(s) 145, 1314
SfuI TTCGAA 2 cut(s) 1161, 1370
SmiMI CAYNNNNRTG 1 cut(s) 642
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
Sse9I AATT 6 cut(s) 460, 534, 698, 780, 1002, 1372
SseBI AGGCCT 1 cut(s) 854
SsiI CCGC 6 cut(s) 8, 150, 162, 280, 1115, 1393
SspMI CTAG 4 cut(s) 908, 1121, 1145, 1337
SstI GAGCTC 1 cut(s) 1056
StuI AGGCCT 1 cut(s) 854
StyD4I CCNGG 2 cut(s) 323, 840
StyI CCWWGG 1 cut(s) 1197
TaaI ACNGT 2 cut(s) 19, 677
TaqI TCGA 7 cut(s) 252, 287, 589, 672, 1008, 1161, 1370
TasI AATT 6 cut(s) 460, 534, 698, 780, 1002, 1372
TatI WGTACW 1 cut(s) 987
TauI GCSGC 3 cut(s) 153, 165, 1117
TfiI GAWTC 3 cut(s) 50, 1079, 1252
Tru1I TTAA 1 cut(s) 771
Tru9I TTAA 1 cut(s) 771
TscAI CASTG 3 cut(s) 682, 1326, 1335
TseFI GTSAC 4 cut(s) 57, 102, 1201, 1346
TseI GCWGC 7 cut(s) 153, 156, 159, 446, 449, 647, 714
Tsp45I GTSAC 4 cut(s) 57, 102, 1201, 1346
TspDTI ATGAA 6 cut(s) 330, 572, 897, 1151, 1202, 1265
TspGWI ACGGA 2 cut(s) 149, 1233
TspRI CASTG 3 cut(s) 682, 1326, 1335
XagI CCTNNNNNAGG 1 cut(s) 957
XbaI TCTAGA 2 cut(s) 1120, 1336
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 1008
XspI CTAG 4 cut(s) 908, 1121, 1145, 1337
ZrmI AGTACT 1 cut(s) 989
Zsp2I ATGCAT 2 cut(s) 999, 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.