AT5G11000

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013041
Physical Location & Seq
Reverse (-)
3478672 .. 3480621
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11000.1

Sequence Viewer

Length: 1170 bp
ATGTCTCCGTCTTGGCTCCGCCCAACCGCCGATCACAATCATCCTCCACCGCAACCGCCGTCGCAATCACCGTCCCCTCTATCTTCCGGTGATCCGAATCTCACAACATGTCTCTACCAAACAGATCACGGCGTCTTCTATCTAACATGGTCCCGAACTTTCTTAGGAGGCCACTCTGTGAATCTCTTCCTCCATTCACAAGATTACTACAACCACTCTTCGCCACTCTCTTTCTCCTCCGCTGATCTCTCTCTTTCCTCCGCCGTCTCTTTCCATCTCAACTTAAACACATTAGCTTTCTGGAAAAAACGTGGATCCAGATTCGTTTCTCCCAAAATCCAAGTCTTCTGGGACTTAAGCAAAGCCAAATTCGACTCTGGATCCGAACCTAGATCCGGATTCTACATCGCTGTAGTTGTTGACGGAGAGATGGGACTATTAGTCGGAGATTCAGTCAAAGAAGCTTACGCTCGTGCTAAATCGGCGAAACCTCCGACGAATCCGCAAGCTCTTCTGTTGAGGAAAGAGCACGTGTTTGGAGCTAGGGTTTTCACAACGAAAGCGAGATTTGGAGGGAAGAACAGAGAGATTTCTATTGATTGTCGTGTTGATGAAGACGCTAAGCTCTGTTTTAGCGTTGATTCGAAACAGGTTCTGCAGATCAAGAGACTTAGATGGAAATTTAGAGGAAATGAGAAAGTTGAAATCGATGGAGTTCATGTTCAGATCTCTTGGGATGTATACAATTGGTTGTTTCAGAGTAAAAGTTCCGGTGACGGCGGAGGAGGAGGAGGACACGCCGTGTTTATGTTTAGATTCGAGAGTGATCCAGAAGCAGAGGAGGTTTGTGAAACGAAGAGGAAAGAAGAAGAAGATGAGAAAAATCGAAACGGTATCGTTTTATGGAAGCCGAAGAAGCAATGTGGAAATAGTTTTGGGATTAAAGGGATTGTTGAGTGGAGGAAGATGAGGAAGAGATTTGTTAAGAGTAAGAGAAGTTCTTCGTCGTCTTCGATTTCGATGTCGTCGGCTTCTTCGGCGTGTAGCTCGTCGGTTATGGAATGGGCTAGTAGTGCTGATGAGGCGGAGTACGGCGGAGGAGGTTGTTCTGGTTCCGGTTCCGGCAATGGTCTTGGATTCTCATTACTGGTTTACGCTTGGATTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

389

Amino Acids

43.04

Weight (kDa)

9.16

Isoelectric Point (pI)

54.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 32 - 387 2.2e-74 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25200 AT5G11000
fragaria_vesca FvH4_2g40820
malus_domestica MD08G1059500.v1.1 MD15G1036800.v1.1
prunus_persica Prupe.1G390900_v2.0.a1
pyrus_communis pycom08g04960 pycom15g03410
rosa_chinensis RchiOBHm_Chr6g0299751
rosa_laevigata RLG00000011391
rosa_multiflora Rmu_sc0002895.1_g000019
rosa_roxburghii Rroxscaffold_2G00123250
rosa_rugosa Rorug06G0292100
rosa_samantha Rh6AG402900 Rh6BG411500 Rh6CG417600 Rh6DG404400
rosa_wichuraiana Rw6G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 741
AccIII TCCGGA 1 cut(s) 395
AclWI GGATC 7 cut(s) 86, 309, 322, 375, 387, 388, 821
AcsI RAATTY 2 cut(s) 368, 680
AcvI CACGTG 1 cut(s) 532
AcyI GRCGYC 1 cut(s) 132
AdeI CACNNNGTG 2 cut(s) 178, 802
AfaI GTAC 1 cut(s) 1091
AfiI CCNNNNNNNGG 1 cut(s) 395
AflII CTTAAG 1 cut(s) 355
AflIII ACRYGT 2 cut(s) 107, 531
AgsI TTSAA 1 cut(s) 704
AhdI GACNNNNNGTC 1 cut(s) 440
AloI GAACNNNNNNTCC 2 cut(s) 705, 737
AluBI AGCT 6 cut(s) 296, 464, 509, 542, 625, 1047
AluI AGCT 6 cut(s) 296, 464, 509, 542, 625, 1047
Alw21I GWGCWC 1 cut(s) 531
Alw26I GTCTC 4 cut(s) 9, 116, 271, 661
AlwI GGATC 7 cut(s) 86, 309, 322, 375, 387, 388, 821
AlwNI CAGNNNCTG 1 cut(s) 655
Aor13HI TCCGGA 1 cut(s) 395
AoxI GGCC 1 cut(s) 169
ApoI RAATTY 2 cut(s) 368, 680
ArsI GACNNNNNNTTYG 2 cut(s) 327, 359
Asp700I GAANNNNTTC 2 cut(s) 185, 1000
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 3 cut(s) 60, 101, 785
AsuII TTCGAA 1 cut(s) 644
AvaII GGWCC 1 cut(s) 150
BamHI GGATCC 2 cut(s) 314, 380
BauI CACGAG 1 cut(s) 471
BbrPI CACGTG 1 cut(s) 532
BbsI GAAGAC 4 cut(s) 127, 337, 621, 1002
Bbv12I GWGCWC 1 cut(s) 531
BccI CCATC 4 cut(s) 282, 424, 669, 704
BceAI ACGGC 6 cut(s) 43, 145, 248, 785, 793, 1108
BcoDI GTCTC 4 cut(s) 9, 116, 271, 661
BfaI CTAG 3 cut(s) 390, 543, 1068
BfmI CTRYAG 2 cut(s) 411, 656
BfrI CTTAAG 1 cut(s) 355
BglII AGATCT 1 cut(s) 726
BlpI GCTNAGC 1 cut(s) 621
Bme18I GGWCC 1 cut(s) 150
BmeRI GACNNNNNGTC 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 6 cut(s) 17, 152, 316, 382, 1114, 1120
BpiI GAAGAC 4 cut(s) 127, 337, 621, 1002
Bpu1102I GCTNAGC 1 cut(s) 621
Bpu14I TTCGAA 1 cut(s) 644
Bsa29I ATCGAT 1 cut(s) 708
BsaAI YACGTR 1 cut(s) 532
BsaBI GATNNNNATC 2 cut(s) 36, 96
BsaHI GRCGYC 1 cut(s) 132
BsaWI WCCGGW 4 cut(s) 86, 395, 770, 1115
BsaXI ACNNNNNCTCC 6 cut(s) 438, 468, 531, 561, 705, 735
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 1152
Bse3DI GCAATG 2 cut(s) 926, 1132
Bse8I GATNNNNATC 2 cut(s) 36, 96
BseAI TCCGGA 1 cut(s) 395
BseCI ATCGAT 1 cut(s) 708
BseGI GGATG 2 cut(s) 40, 742
BseJI GATNNNNATC 2 cut(s) 36, 96
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMI GCAATG 2 cut(s) 926, 1132
BseNI ACTGG 1 cut(s) 1152
BseRI GAGGAG 6 cut(s) 226, 798, 801, 804, 854, 1113
BshFI GGCC 1 cut(s) 171
BshVI ATCGAT 1 cut(s) 708
BsiHKAI GWGCWC 1 cut(s) 531
BsiSI CCGG 5 cut(s) 87, 396, 771, 1116, 1122
BslFI GGGAC 4 cut(s) 58, 136, 365, 447
BslI CCNNNNNNNGG 1 cut(s) 395
BsmAI GTCTC 4 cut(s) 9, 116, 271, 661
BsmBI CGTCTC 1 cut(s) 271
BsmFI GGGAC 4 cut(s) 58, 136, 365, 447
BsnI GGCC 1 cut(s) 171
Bsp119I TTCGAA 1 cut(s) 644
Bsp1286I GDGCHC 1 cut(s) 531
Bsp13I TCCGGA 1 cut(s) 395
Bsp1720I GCTNAGC 1 cut(s) 621
BspANI GGCC 1 cut(s) 171
BspDI ATCGAT 1 cut(s) 708
BspEI TCCGGA 1 cut(s) 395
BspLI GGNNCC 6 cut(s) 17, 152, 316, 382, 1114, 1120
BspMAI CTGCAG 1 cut(s) 660
BspPI GGATC 7 cut(s) 86, 309, 322, 375, 387, 388, 821
BspQI GCTCTTC 1 cut(s) 516
BspT104I TTCGAA 1 cut(s) 644
BspTI CTTAAG 1 cut(s) 355
BsrDI GCAATG 2 cut(s) 926, 1132
BsrI ACTGG 1 cut(s) 1152
BssNAI GTATAC 1 cut(s) 742
BssNI GRCGYC 1 cut(s) 132
BssSI CACGAG 1 cut(s) 471
Bst1107I GTATAC 1 cut(s) 742
Bst2BI CACGAG 1 cut(s) 471
Bst4CI ACNGT 2 cut(s) 72, 893
Bst6I CTCTTC 5 cut(s) 191, 223, 516, 851, 968
BstACI GRCGYC 1 cut(s) 132
BstAFI CTTAAG 1 cut(s) 355
BstBAI YACGTR 1 cut(s) 532
BstBI TTCGAA 1 cut(s) 644
BstC8I GCNNGC 1 cut(s) 507
BstDEI CTNAG 3 cut(s) 163, 621, 671
BstF5I GGATG 2 cut(s) 40, 742
BstMAI GTCTC 4 cut(s) 9, 116, 271, 661
BstMWI GCNNNNNNNGC 5 cut(s) 482, 916, 1037, 1073, 1082
BstNSI RCATGY 1 cut(s) 111
BstSFI CTRYAG 2 cut(s) 411, 656
BstV2I GAAGAC 4 cut(s) 127, 337, 621, 1002
BstX2I RGATCY 4 cut(s) 314, 380, 392, 726
BstYI RGATCY 4 cut(s) 314, 380, 392, 726
BstZ17I GTATAC 1 cut(s) 742
Bsu15I ATCGAT 1 cut(s) 708
BsuRI GGCC 1 cut(s) 171
BsuTUI ATCGAT 1 cut(s) 708
BtgZI GCGATG 1 cut(s) 391
BtsCI GGATG 2 cut(s) 40, 742
Cac8I GCNNGC 1 cut(s) 507
CaiI CAGNNNCTG 1 cut(s) 655
Cfr13I GGNCC 1 cut(s) 150
ClaI ATCGAT 1 cut(s) 708
CseI GACGC 2 cut(s) 121, 626
Csp6I GTAC 1 cut(s) 1090
CviAII CATG 3 cut(s) 108, 147, 719
CviQI GTAC 1 cut(s) 1090
DdeI CTNAG 3 cut(s) 163, 621, 671
DraIII CACNNNGTG 2 cut(s) 178, 802
DriI GACNNNNNGTC 1 cut(s) 440
Eam1104I CTCTTC 5 cut(s) 191, 223, 516, 851, 968
Eam1105I GACNNNNNGTC 1 cut(s) 440
EarI CTCTTC 5 cut(s) 191, 223, 516, 851, 968
EciI GGCGGA 5 cut(s) 8, 250, 795, 1100, 1110
Eco47I GGWCC 1 cut(s) 150
Eco72I CACGTG 1 cut(s) 532
Esp3I CGTCTC 1 cut(s) 271
FaeI CATG 3 cut(s) 111, 150, 722
FaiI YATR 7 cut(s) 109, 148, 720, 742, 809, 904, 1058
FaqI GGGAC 4 cut(s) 58, 136, 365, 447
FatI CATG 3 cut(s) 107, 146, 718
FblI GTMKAC 1 cut(s) 741
FokI GGATG 2 cut(s) 27, 749
FspBI CTAG 3 cut(s) 390, 543, 1068
HaeIII GGCC 1 cut(s) 171
HapII CCGG 5 cut(s) 87, 396, 771, 1116, 1122
HgaI GACGC 2 cut(s) 121, 626
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 3 cut(s) 111, 150, 722
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 462
HpaII CCGG 5 cut(s) 87, 396, 771, 1116, 1122
HphI GGTGA 3 cut(s) 60, 101, 785
Hpy166II GTNNAC 3 cut(s) 421, 742, 1153
Hpy188I TCNGA 6 cut(s) 96, 385, 446, 495, 726, 759
Hpy188III TCNNGA 8 cut(s) 153, 301, 318, 378, 396, 664, 820, 830
Hpy8I GTNNAC 3 cut(s) 421, 742, 1153
Hpy99I CGWCG 5 cut(s) 64, 499, 1009, 1030, 1054
HpyCH4III ACNGT 2 cut(s) 72, 893
HpyCH4IV ACGT 2 cut(s) 310, 531
HpyCH4V TGCA 1 cut(s) 658
HpyF10VI GCNNNNNNNGC 5 cut(s) 482, 916, 1037, 1073, 1082
HpyF3I CTNAG 3 cut(s) 163, 621, 671
HpySE526I ACGT 2 cut(s) 310, 531
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 3 cut(s) 111, 150, 722
Kpn2I TCCGGA 1 cut(s) 395
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 2 cut(s) 21, 539
MaeI CTAG 3 cut(s) 390, 543, 1068
MaeII ACGT 2 cut(s) 310, 531
MaeIII GTNAC 1 cut(s) 773
MfeI CAATTG 1 cut(s) 745
MflI RGATCY 4 cut(s) 314, 380, 392, 726
MhlI GDGCHC 1 cut(s) 531
MluCI AATT 3 cut(s) 368, 680, 745
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 2 cut(s) 424, 518
MroI TCCGGA 1 cut(s) 395
MroXI GAANNNNTTC 2 cut(s) 185, 1000
MseI TTAA 5 cut(s) 284, 356, 942, 984, 1164
MspA1I CMGCKG 1 cut(s) 242
MspCI CTTAAG 1 cut(s) 355
MspI CCGG 5 cut(s) 87, 396, 771, 1116, 1122
MunI CAATTG 1 cut(s) 745
MwoI GCNNNNNNNGC 5 cut(s) 482, 916, 1037, 1073, 1082
NlaIII CATG 3 cut(s) 111, 150, 722
NlaIV GGNNCC 6 cut(s) 17, 152, 316, 382, 1114, 1120
NmuCI GTSAC 1 cut(s) 773
NspI RCATGY 1 cut(s) 111
NspV TTCGAA 1 cut(s) 644
PciI ACATGT 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 516
PcsI WCGNNNNNNNCGW 2 cut(s) 68, 1010
PdmI GAANNNNTTC 2 cut(s) 185, 1000
PfeI GAWTC 9 cut(s) 97, 181, 321, 399, 449, 499, 641, 816, 1137
PleI GAGTC 1 cut(s) 368
PmaCI CACGTG 1 cut(s) 532
PmlI CACGTG 1 cut(s) 532
PpsI GAGTC 1 cut(s) 368
Ppu21I YACGTR 1 cut(s) 532
PscI ACATGT 1 cut(s) 107
PspCI CACGTG 1 cut(s) 532
PspN4I GGNNCC 6 cut(s) 17, 152, 316, 382, 1114, 1120
PspPI GGNCC 1 cut(s) 150
PsrI GAACNNNNNNTAC 2 cut(s) 982, 1014
PstI CTGCAG 1 cut(s) 660
PstNI CAGNNNCTG 1 cut(s) 655
PsuI RGATCY 4 cut(s) 314, 380, 392, 726
RsaI GTAC 1 cut(s) 1091
RsaNI GTAC 1 cut(s) 1090
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 5 cut(s) 284, 356, 942, 984, 1164
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 1 cut(s) 368
SduI GDGCHC 1 cut(s) 531
SfcI CTRYAG 2 cut(s) 411, 656
SfuI TTCGAA 1 cut(s) 644
SinI GGWCC 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
Sse9I AATT 3 cut(s) 368, 680, 745
SspMI CTAG 3 cut(s) 390, 543, 1068
TaaI ACNGT 2 cut(s) 72, 893
TaiI ACGT 2 cut(s) 313, 534
TaqI TCGA 7 cut(s) 372, 644, 708, 819, 886, 1013, 1019
TasI AATT 3 cut(s) 368, 680, 745
TfiI GAWTC 9 cut(s) 97, 181, 321, 399, 449, 499, 641, 816, 1137
Tru1I TTAA 5 cut(s) 284, 356, 942, 984, 1164
Tru9I TTAA 5 cut(s) 284, 356, 942, 984, 1164
TseFI GTSAC 1 cut(s) 773
Tsp45I GTSAC 1 cut(s) 773
TspDTI ATGAA 2 cut(s) 627, 707
TspGWI ACGGA 1 cut(s) 438
Vha464I CTTAAG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 2 cut(s) 368, 680
XceI RCATGY 1 cut(s) 111
XmiI GTMKAC 1 cut(s) 741
XmnI GAANNNNTTC 2 cut(s) 185, 1000
XspI CTAG 3 cut(s) 390, 543, 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.