Rh6AG402900

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013041
Physical Location & Seq
Reverse (-)
59999073 .. 60000748
1676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG402900.1

Sequence Viewer

Length: 1059 bp
ATGTCCCGCCACAACTCCTCCTCTACTTTCCCTTCTTGCTTCCGCCCCTCCCCAACCACCGCCCAACACCACCACTCCCCGCCGCCGACGCCTCCTCCACCAATCTCCGGCCACGCCAACCTCACCACCTGTCTCTACCACACCGACTTCGCCCTCTTCTCCCTCACCTGGTCTCGCTCCTTCCTTGGCGGCCGCTCTCTCCACCTCAACCTCCTCCACCACGCCTTCGACTCCCCCCCACCTCCTTCTTCCTCCCCTTCTTTCCACCTCAACATCAAGCCCTTCTTCTTCTGGAAACGCCATGGATCCAAGAAGCTCGCCCCCAATATCCTCATTTTCTGGGACTTCTCCAGAGCCCGATTCGGCTCCGGACCCGAACCCGTTTCCGCGTTCTACGTCGCCGTCGTAGTTGAGGGCGACATGACCCTCCTCCTCGGAGATTTGAACAAAGAGGCTTATGCCAAAACCAGAGCCAAACTGGCGCTGGATGAAAGTCCTCAACCGCAGGCTCTGGTTTTGAAGCGAGAGCACGTGGTTGCCAGGAACATTTACACCACCAAGGCCAAATTGGGCGGCAGAATCAGAGACATCCAAATCGATTGCGGCCACAATGACGACTTCAGCCGGCTCACCTTCAGAGTCGACAACAAAAGGGTTCTGCAGATAAAGCGATTGAAGTGGAAATTCAGAGGGAATGAGCGGATTGAGGTGGACGGTGTGCCGATGCATATCTCATGGGACGTCTACAATTGGCTTTTCGAGAATGACAGCAATGATGGCCATGCAGTGTTCATGTTCAGGTTCGAGGAAGATGAACAAGACATTAACACCCAATTGAGTGTCGGTCATTGGGCGCAGCAGCAGCAGCAGTTCTGGAATTTCGGGATGAATGGGATTGAGTGGAGGAAGATGGGCAAGAGCTTTTCGTCTTCTTCCGTTTCAATGTCGTCTGCGGGGTCTTGTAGCTCTTCGGTAATGGAGTGGGCTACTATGGAGGAGAGCGAGCTCAGCGCCGGTCCTACCGGATTTTCTTTGCTCGTTTATGCTTGGAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

352

Amino Acids

40.03

Weight (kDa)

9.0

Isoelectric Point (pI)

67.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 39 - 351 7.9e-76 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25200 AT5G11000
fragaria_vesca FvH4_2g40820
malus_domestica MD08G1059500.v1.1 MD15G1036800.v1.1
prunus_persica Prupe.1G390900_v2.0.a1
pyrus_communis pycom08g04960 pycom15g03410
rosa_chinensis RchiOBHm_Chr6g0299751
rosa_laevigata RLG00000011391
rosa_multiflora Rmu_sc0002895.1_g000019
rosa_roxburghii Rroxscaffold_2G00123250
rosa_rugosa Rorug06G0292100
rosa_samantha Rh6AG402900 Rh6BG411500 Rh6CG417600 Rh6DG404400
rosa_wichuraiana Rw6G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 744
AccBSI CCGCTC 2 cut(s) 195, 700
AccI GTMKAC 2 cut(s) 642, 744
AccII CGCG 1 cut(s) 389
AccIII TCCGGA 1 cut(s) 368
AclWI GGATC 2 cut(s) 300, 313
AcoI YGGCCR 4 cut(s) 109, 190, 604, 778
AcsI RAATTY 2 cut(s) 683, 877
AcuI CTGAAG 2 cut(s) 604, 619
AcvI CACGTG 1 cut(s) 532
AcyI GRCGYC 2 cut(s) 89, 741
AfiI CCNNNNNNNGG 2 cut(s) 107, 168
AgsI TTSAA 4 cut(s) 445, 520, 676, 942
AjnI CCWGG 2 cut(s) 167, 539
AluBI AGCT 4 cut(s) 316, 921, 966, 1006
AluI AGCT 4 cut(s) 316, 921, 966, 1006
Alw21I GWGCWC 2 cut(s) 531, 1008
Alw26I GTCTC 3 cut(s) 137, 177, 579
AlwI GGATC 2 cut(s) 300, 313
AlwNI CAGNNNCTG 1 cut(s) 511
Aor13HI TCCGGA 1 cut(s) 368
AoxI GGCC 5 cut(s) 109, 190, 561, 604, 778
ApeKI GCWGC 4 cut(s) 856, 859, 862, 865
ApoI RAATTY 2 cut(s) 683, 877
AspLEI GCGC 3 cut(s) 484, 856, 1013
AspS9I GGNCC 2 cut(s) 371, 1016
AsuHPI GGTGA 3 cut(s) 115, 157, 622
AvaII GGWCC 2 cut(s) 371, 1016
BalI TGGCCA 1 cut(s) 780
BamHI GGATCC 1 cut(s) 305
BanII GRGCYC 2 cut(s) 358, 1008
BbrPI CACGTG 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 921
Bbv12I GWGCWC 2 cut(s) 531, 1008
BbvI GCAGC 4 cut(s) 868, 871, 874, 877
BccI CCATC 2 cut(s) 770, 904
BceAI ACGGC 1 cut(s) 386
BciT130I CCWGG 2 cut(s) 169, 541
BcoDI GTCTC 3 cut(s) 137, 177, 579
BfmI CTRYAG 1 cut(s) 659
BfoI RGCGCY 2 cut(s) 485, 1014
BglI GCCNNNNNGGC 1 cut(s) 479
BisI GCNGC 9 cut(s) 83, 190, 193, 574, 604, 857, 860, 863, 866
BlpI GCTNAGC 1 cut(s) 1007
BlsI GCNGC 9 cut(s) 84, 191, 194, 575, 605, 858, 861, 864, 867
Bme1390I CCNGG 2 cut(s) 169, 541
Bme18I GGWCC 2 cut(s) 371, 1016
BmgT120I GGNCC 2 cut(s) 371, 1016
BmiI GGNNCC 3 cut(s) 307, 367, 373
BmrFI CCNGG 2 cut(s) 169, 541
BmsI GCATC 1 cut(s) 714
BpiI GAAGAC 1 cut(s) 921
BpmI CTGGAG 1 cut(s) 334
Bpu1102I GCTNAGC 1 cut(s) 1007
Bsa29I ATCGAT 1 cut(s) 597
BsaAI YACGTR 1 cut(s) 532
BsaBI GATNNNNATC 1 cut(s) 728
BsaHI GRCGYC 2 cut(s) 89, 741
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 4 cut(s) 184, 301, 433, 558
BsaWI WCCGGW 2 cut(s) 368, 1022
BsaXI ACNNNNNCTCC 5 cut(s) 32, 59, 79, 89, 109
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 168
Bse118I RCCGGY 2 cut(s) 624, 1013
Bse1I ACTGG 1 cut(s) 483
Bse3DI GCAATG 1 cut(s) 778
Bse8I GATNNNNATC 1 cut(s) 728
BseAI TCCGGA 1 cut(s) 368
BseBI CCWGG 2 cut(s) 169, 541
BseCI ATCGAT 1 cut(s) 597
BseDI CCNNGG 4 cut(s) 184, 301, 433, 558
BseGI GGATG 3 cut(s) 493, 588, 891
BseJI GATNNNNATC 1 cut(s) 728
BseLI CCNNNNNNNGG 2 cut(s) 107, 168
BseMI GCAATG 1 cut(s) 778
BseMII CTCAG 1 cut(s) 1021
BseNI ACTGG 1 cut(s) 483
BseRI GAGGAG 7 cut(s) 7, 10, 84, 203, 419, 422, 1010
BseX3I CGGCCG 1 cut(s) 190
BseXI GCAGC 4 cut(s) 868, 871, 874, 877
Bsh1236I CGCG 1 cut(s) 389
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 5 cut(s) 111, 192, 563, 606, 780
BshVI ATCGAT 1 cut(s) 597
BsiEI CGRYCG 1 cut(s) 193
BsiHKAI GWGCWC 2 cut(s) 531, 1008
BsiSI CCGG 5 cut(s) 108, 369, 625, 1014, 1023
BslFI GGGAC 2 cut(s) 356, 752
BslI CCNNNNNNNGG 2 cut(s) 107, 168
BsmAI GTCTC 3 cut(s) 137, 177, 579
BsmFI GGGAC 2 cut(s) 356, 752
BsnI GGCC 5 cut(s) 111, 192, 563, 606, 780
Bso31I GGTCTC 1 cut(s) 177
Bsp1286I GDGCHC 3 cut(s) 358, 531, 1008
Bsp13I TCCGGA 1 cut(s) 368
Bsp143I GATC 1 cut(s) 305
Bsp1720I GCTNAGC 1 cut(s) 1007
Bsp19I CCATGG 1 cut(s) 301
BspANI GGCC 5 cut(s) 111, 192, 563, 606, 780
BspCNI CTCAG 1 cut(s) 1020
BspDI ATCGAT 1 cut(s) 597
BspEI TCCGGA 1 cut(s) 368
BspFNI CGCG 1 cut(s) 389
BspLI GGNNCC 3 cut(s) 307, 367, 373
BspMAI CTGCAG 1 cut(s) 663
BspPI GGATC 2 cut(s) 300, 313
BspQI GCTCTTC 1 cut(s) 973
BspTNI GGTCTC 1 cut(s) 177
BsrBI CCGCTC 2 cut(s) 195, 700
BsrDI GCAATG 1 cut(s) 778
BsrFI RCCGGY 2 cut(s) 624, 1013
BsrI ACTGG 1 cut(s) 483
BssAI RCCGGY 2 cut(s) 624, 1013
BssECI CCNNGG 4 cut(s) 184, 301, 433, 558
BssMI GATC 1 cut(s) 305
BssNI GRCGYC 2 cut(s) 89, 741
BssT1I CCWWGG 3 cut(s) 184, 301, 558
Bst2UI CCWGG 2 cut(s) 169, 541
Bst4CI ACNGT 1 cut(s) 716
Bst6I CTCTTC 2 cut(s) 161, 973
BstACI GRCGYC 2 cut(s) 89, 741
BstBAI YACGTR 1 cut(s) 532
BstC8I GCNNGC 4 cut(s) 318, 507, 626, 1004
BstDEI CTNAG 1 cut(s) 1007
BstDSI CCRYGG 1 cut(s) 301
BstF5I GGATG 3 cut(s) 493, 588, 891
BstFNI CGCG 1 cut(s) 389
BstH2I RGCGCY 2 cut(s) 485, 1014
BstHHI GCGC 3 cut(s) 484, 856, 1013
BstKTI GATC 1 cut(s) 308
BstMAI GTCTC 3 cut(s) 137, 177, 579
BstMBI GATC 1 cut(s) 305
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 7 cut(s) 88, 479, 667, 777, 862, 865, 1008
BstNI CCWGG 2 cut(s) 169, 541
BstSCI CCNGG 2 cut(s) 167, 539
BstSFI CTRYAG 1 cut(s) 659
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 4 cut(s) 868, 871, 874, 877
BstV2I GAAGAC 1 cut(s) 921
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BstZI CGGCCG 1 cut(s) 190
Bsu15I ATCGAT 1 cut(s) 597
BsuRI GGCC 5 cut(s) 111, 192, 563, 606, 780
BsuTUI ATCGAT 1 cut(s) 597
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 3 cut(s) 493, 588, 891
BtsI GCAGTG 1 cut(s) 792
BtsIMutI CAGTG 1 cut(s) 792
Cac8I GCNNGC 4 cut(s) 318, 507, 626, 1004
CaiI CAGNNNCTG 1 cut(s) 511
CciNI GCGGCCGC 1 cut(s) 190
CfoI GCGC 3 cut(s) 484, 856, 1013
Cfr10I RCCGGY 2 cut(s) 624, 1013
Cfr13I GGNCC 2 cut(s) 371, 1016
ClaI ATCGAT 1 cut(s) 597
CseI GACGC 1 cut(s) 97
CsiI ACCWGGT 1 cut(s) 167
CviAII CATG 5 cut(s) 302, 421, 735, 782, 793
DdeI CTNAG 1 cut(s) 1007
DpnI GATC 1 cut(s) 307
DpnII GATC 1 cut(s) 305
EaeI YGGCCR 4 cut(s) 109, 190, 604, 778
EagI CGGCCG 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 161, 973
EarI CTCTTC 2 cut(s) 161, 973
EciI GGCGGA 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 1006
EclXI CGGCCG 1 cut(s) 190
Eco130I CCWWGG 3 cut(s) 184, 301, 558
Eco24I GRGCYC 2 cut(s) 358, 1008
Eco31I GGTCTC 1 cut(s) 177
Eco47I GGWCC 2 cut(s) 371, 1016
Eco52I CGGCCG 1 cut(s) 190
Eco53kI GAGCTC 1 cut(s) 1006
Eco57I CTGAAG 2 cut(s) 604, 619
Eco72I CACGTG 1 cut(s) 532
EcoICRI GAGCTC 1 cut(s) 1006
EcoRII CCWGG 2 cut(s) 167, 539
EcoT14I CCWWGG 3 cut(s) 184, 301, 558
EcoT22I ATGCAT 1 cut(s) 729
EcoT38I GRGCYC 2 cut(s) 358, 1008
ErhI CCWWGG 3 cut(s) 184, 301, 558
FaeI CATG 5 cut(s) 305, 424, 738, 785, 796
FaiI YATR 9 cut(s) 303, 422, 459, 729, 736, 783, 794, 992, 1044
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 2 cut(s) 356, 752
FatI CATG 5 cut(s) 301, 420, 734, 781, 792
FauI CCCGC 3 cut(s) 14, 87, 946
FblI GTMKAC 2 cut(s) 642, 744
Fnu4HI GCNGC 9 cut(s) 83, 190, 193, 574, 604, 857, 860, 863, 866
FokI GGATG 3 cut(s) 500, 575, 898
FriOI GRGCYC 2 cut(s) 358, 1008
Fsp4HI GCNGC 9 cut(s) 83, 190, 193, 574, 604, 857, 860, 863, 866
GlaI GCGC 3 cut(s) 483, 855, 1012
GluI GCNGC 9 cut(s) 83, 190, 193, 574, 604, 857, 860, 863, 866
GsuI CTGGAG 1 cut(s) 334
HaeII RGCGCY 2 cut(s) 485, 1014
HaeIII GGCC 5 cut(s) 111, 192, 563, 606, 780
HapII CCGG 5 cut(s) 108, 369, 625, 1014, 1023
HgaI GACGC 1 cut(s) 97
HhaI GCGC 3 cut(s) 484, 856, 1013
Hin1I GRCGYC 2 cut(s) 89, 741
Hin1II CATG 5 cut(s) 305, 424, 738, 785, 796
Hin6I GCGC 3 cut(s) 482, 854, 1011
HinP1I GCGC 3 cut(s) 482, 854, 1011
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HinfI GANTC 4 cut(s) 230, 360, 579, 639
HpaII CCGG 5 cut(s) 108, 369, 625, 1014, 1023
HphI GGTGA 3 cut(s) 115, 157, 622
Hpy166II GTNNAC 3 cut(s) 643, 712, 745
Hpy188I TCNGA 4 cut(s) 437, 584, 638, 689
Hpy188III TCNNGA 6 cut(s) 292, 351, 369, 760, 874, 883
Hpy8I GTNNAC 3 cut(s) 643, 712, 745
Hpy99I CGWCG 3 cut(s) 91, 401, 407
HpyAV CCTTC 7 cut(s) 42, 190, 235, 255, 267, 292, 643
HpyCH4III ACNGT 1 cut(s) 716
HpyCH4IV ACGT 3 cut(s) 396, 531, 741
HpyCH4V TGCA 3 cut(s) 661, 727, 785
HpyF10VI GCNNNNNNNGC 7 cut(s) 88, 479, 667, 777, 862, 865, 1008
HpyF3I CTNAG 1 cut(s) 1007
HpySE526I ACGT 3 cut(s) 396, 531, 741
Hsp92I GRCGYC 2 cut(s) 89, 741
Hsp92II CATG 5 cut(s) 305, 424, 738, 785, 796
HspAI GCGC 3 cut(s) 482, 854, 1011
Kpn2I TCCGGA 1 cut(s) 368
KroI GCCGGC 1 cut(s) 624
KroNI GCCGGC 1 cut(s) 626
Kzo9I GATC 1 cut(s) 305
LguI GCTCTTC 1 cut(s) 973
LmnI GCTCC 2 cut(s) 182, 371
Lsp1109I GCAGC 4 cut(s) 868, 871, 874, 877
LweI GCATC 1 cut(s) 714
MabI ACCWGGT 1 cut(s) 167
MaeII ACGT 3 cut(s) 396, 531, 741
MalI GATC 1 cut(s) 307
MbiI CCGCTC 2 cut(s) 195, 700
MboI GATC 1 cut(s) 305
MboII GAAGA 9 cut(s) 148, 240, 277, 280, 821, 919, 921, 924, 960
MfeI CAATTG 2 cut(s) 748, 833
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 3 cut(s) 358, 531, 1008
MlsI TGGCCA 1 cut(s) 780
MluCI AATT 5 cut(s) 566, 683, 748, 833, 877
MluNI TGGCCA 1 cut(s) 780
MlyI GAGTC 2 cut(s) 224, 648
Mox20I TGGCCA 1 cut(s) 780
Mph1103I ATGCAT 1 cut(s) 729
MroI TCCGGA 1 cut(s) 368
MroNI GCCGGC 1 cut(s) 624
MscI TGGCCA 1 cut(s) 780
MseI TTAA 1 cut(s) 825
Msp20I TGGCCA 1 cut(s) 780
MspI CCGG 5 cut(s) 108, 369, 625, 1014, 1023
MspR9I CCNGG 2 cut(s) 169, 541
MunI CAATTG 2 cut(s) 748, 833
MvaI CCWGG 2 cut(s) 169, 541
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 7 cut(s) 88, 479, 667, 777, 862, 865, 1008
NaeI GCCGGC 1 cut(s) 626
NcoI CCATGG 1 cut(s) 301
NdeII GATC 1 cut(s) 305
NgoMIV GCCGGC 1 cut(s) 624
NlaIII CATG 5 cut(s) 305, 424, 738, 785, 796
NlaIV GGNNCC 3 cut(s) 307, 367, 373
NotI GCGGCCGC 1 cut(s) 190
NsiI ATGCAT 1 cut(s) 729
PciSI GCTCTTC 1 cut(s) 973
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PdiI GCCGGC 1 cut(s) 626
PfeI GAWTC 2 cut(s) 360, 579
PkrI GCNGC 9 cut(s) 84, 191, 194, 575, 605, 858, 861, 864, 867
PleI GAGTC 2 cut(s) 224, 647
PmaCI CACGTG 1 cut(s) 532
PmlI CACGTG 1 cut(s) 532
PpsI GAGTC 2 cut(s) 224, 647
Ppu21I YACGTR 1 cut(s) 532
Psp124BI GAGCTC 1 cut(s) 1008
Psp6I CCWGG 2 cut(s) 167, 539
PspCI CACGTG 1 cut(s) 532
PspGI CCWGG 2 cut(s) 167, 539
PspN4I GGNNCC 3 cut(s) 307, 367, 373
PspPI GGNCC 2 cut(s) 371, 1016
PstI CTGCAG 1 cut(s) 663
PstNI CAGNNNCTG 1 cut(s) 511
PsuI RGATCY 1 cut(s) 305
SacI GAGCTC 1 cut(s) 1008
SalI GTCGAC 1 cut(s) 641
SapI GCTCTTC 1 cut(s) 973
SaqAI TTAA 1 cut(s) 825
SatI GCNGC 9 cut(s) 83, 190, 193, 574, 604, 857, 860, 863, 866
Sau3AI GATC 1 cut(s) 305
Sau96I GGNCC 2 cut(s) 371, 1016
SchI GAGTC 2 cut(s) 224, 648
ScrFI CCNGG 2 cut(s) 169, 541
SduI GDGCHC 3 cut(s) 358, 531, 1008
SexAI ACCWGGT 1 cut(s) 167
SfaNI GCATC 1 cut(s) 714
SfcI CTRYAG 1 cut(s) 659
SinI GGWCC 2 cut(s) 371, 1016
Sse9I AATT 5 cut(s) 566, 683, 748, 833, 877
SstI GAGCTC 1 cut(s) 1008
StyD4I CCNGG 2 cut(s) 167, 539
StyI CCWWGG 3 cut(s) 184, 301, 558
TaaI ACNGT 1 cut(s) 716
TaiI ACGT 3 cut(s) 399, 534, 744
TaqI TCGA 5 cut(s) 228, 597, 642, 759, 804
TaqII GACCGA 1 cut(s) 833
TasI AATT 5 cut(s) 566, 683, 748, 833, 877
TauI GCSGC 5 cut(s) 85, 192, 195, 576, 606
TfiI GAWTC 2 cut(s) 360, 579
Tru1I TTAA 1 cut(s) 825
Tru9I TTAA 1 cut(s) 825
TscAI CASTG 1 cut(s) 792
TseI GCWGC 4 cut(s) 856, 859, 862, 865
TspDTI ATGAA 4 cut(s) 504, 781, 828, 902
TspGWI ACGGA 1 cut(s) 925
TspRI CASTG 1 cut(s) 792
VpaK11BI GGWCC 2 cut(s) 371, 1016
XapI RAATTY 2 cut(s) 683, 877
XcmI CCANNNNNNNNNTGG 3 cut(s) 475, 481, 565
XmiI GTMKAC 2 cut(s) 642, 744
ZraI GACGTC 1 cut(s) 742
Zsp2I ATGCAT 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.