Rroxscaffold_2G00123250

Plant protein of unknown function (DUF868)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
57070248 .. 57070481
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123250.1

Sequence Viewer

Length: 234 bp
ATGTCTCATCCTATCGGAGTCGAATCGTCACCAGCTCGCTACGTCTCTCGTTCACCACTAGCCGGCGAAGACGTGGGGGTTCATCAATTTCTTTTTGGGATGAATGGGATTGAGTGGAGGAAGATGGACAAGAGCTTTTCATCTACTTCAGTTTCAATGTCGTCTGTGGGGTCTTGTAACTCTTTGGTAATGGAATGGGCTACTATAGAGGAGAGCGAGCGAGCTCGGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

77

Amino Acids

8.46

Weight (kDa)

5.55

Isoelectric Point (pI)

69.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25200 AT5G11000
fragaria_vesca FvH4_2g40820
malus_domestica MD08G1059500.v1.1 MD15G1036800.v1.1
prunus_persica Prupe.1G390900_v2.0.a1
pyrus_communis pycom08g04960 pycom15g03410
rosa_chinensis RchiOBHm_Chr6g0299751
rosa_laevigata RLG00000011391
rosa_multiflora Rmu_sc0002895.1_g000019
rosa_roxburghii Rroxscaffold_2G00123250
rosa_rugosa Rorug06G0292100
rosa_samantha Rh6AG402900 Rh6BG411500 Rh6CG417600 Rh6DG404400
rosa_wichuraiana Rw6G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 156
AjiI CACGTC 1 cut(s) 73
AluBI AGCT 3 cut(s) 35, 135, 224
AluI AGCT 3 cut(s) 35, 135, 224
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 2 cut(s) 9, 49
AsuHPI GGTGA 2 cut(s) 21, 45
BanII GRGCYC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 226
BccI CCATC 1 cut(s) 118
BcgI CGANNNNNNTGC 1 cut(s) 210
BcoDI GTCTC 2 cut(s) 9, 49
BfaI CTAG 2 cut(s) 59, 232
BfmI CTRYAG 1 cut(s) 204
BmgBI CACGTC 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse118I RCCGGY 1 cut(s) 62
BseGI GGATG 2 cut(s) 7, 105
BseLI CCNNNNNNNGG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 226
BsiSI CCGG 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 62
BsmAI GTCTC 2 cut(s) 9, 49
BsmBI CGTCTC 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 62
BstC8I GCNNGC 4 cut(s) 37, 64, 218, 222
BstF5I GGATG 2 cut(s) 7, 105
BstMAI GTCTC 2 cut(s) 9, 49
BstSFI CTRYAG 1 cut(s) 204
BstV2I GAAGAC 1 cut(s) 75
BtrI CACGTC 1 cut(s) 73
BtsCI GGATG 2 cut(s) 7, 105
Cac8I GCNNGC 4 cut(s) 37, 64, 218, 222
Cfr10I RCCGGY 1 cut(s) 62
CviJI RGCY 5 cut(s) 35, 62, 135, 200, 224
CviKI_1 RGCY 5 cut(s) 35, 62, 135, 200, 224
Ecl136II GAGCTC 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 49
FaiI YATR 1 cut(s) 206
FokI GGATG 1 cut(s) 112
FriOI GRGCYC 1 cut(s) 226
FspBI CTAG 2 cut(s) 59, 232
HapII CCGG 1 cut(s) 63
HinfI GANTC 2 cut(s) 18, 23
HpaII CCGG 1 cut(s) 63
HphI GGTGA 2 cut(s) 21, 45
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 53
HpyCH4IV ACGT 2 cut(s) 42, 72
HpySE526I ACGT 2 cut(s) 42, 72
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
LpnPI CCDG 2 cut(s) 45, 76
MaeI CTAG 2 cut(s) 59, 232
MaeII ACGT 2 cut(s) 42, 72
MaeIII GTNAC 2 cut(s) 27, 176
MboII GAAGA 2 cut(s) 80, 133
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 1 cut(s) 86
MlyI GAGTC 1 cut(s) 27
MnlI CCTC 2 cut(s) 111, 202
MroNI GCCGGC 1 cut(s) 62
MspI CCGG 1 cut(s) 63
NaeI GCCGGC 1 cut(s) 64
NgoMIV GCCGGC 1 cut(s) 62
NmuCI GTSAC 1 cut(s) 27
PdiI GCCGGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 23
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
Psp124BI GAGCTC 1 cut(s) 226
SacI GAGCTC 1 cut(s) 226
SchI GAGTC 1 cut(s) 27
SduI GDGCHC 1 cut(s) 226
SetI ASST 5 cut(s) 37, 45, 75, 137, 226
SfcI CTRYAG 1 cut(s) 204
SgeI CNNG 9 cut(s) 44, 48, 60, 71, 75, 85, 142, 186, 229
Sse9I AATT 1 cut(s) 86
SspMI CTAG 2 cut(s) 59, 232
SstI GAGCTC 1 cut(s) 226
TaiI ACGT 2 cut(s) 45, 75
TaqI TCGA 1 cut(s) 21
TasI AATT 1 cut(s) 86
TfiI GAWTC 1 cut(s) 23
TseFI GTSAC 1 cut(s) 27
Tsp45I GTSAC 1 cut(s) 27
TspDTI ATGAA 3 cut(s) 71, 116, 129
XspI CTAG 2 cut(s) 59, 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.