FvH4_2g40820

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013041
Physical Location & Seq
Forward (+)
29014671 .. 29016667
1997 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40820.t1

Sequence Viewer

Length: 1059 bp
ATGTCCCGCCACAACTCCTCCTCCTCCTCTACTTTCCCTTCTTGCTTCCGCCCCTCCCCCACTATCCAACACCACCACTCCCCGCCGCCGTCCCCTCCTCCCTCAATCTCCGGCCACCCCAACCTCACCACCTGCCTCTACCACACCGACTTTGCCATCTTCTCCCTCACCTGGTCCCGCTCCTTCCTCGGCGGCCGCTCTCTCCACCTCAACCTCCTCCACCACGCCTTCGACTCTCCCCCACCTCCTTCCTCCTCCCCTTCTTTCCACCTCAACTTGAAACCCTTCTTCTTCTGGAAGCGCCATGGCTCCAAGAAGCTCGCCCCCAATGTCCTCATTTTCTGGGACTTCTCCCGAGCCAAATTCTCCTCCGGACCCGAACCCCTTTCCGCTTTCTACGTCGCCGTCGTTGTCGACGGCGACATGACCCTTCTCCTCGGAGACTTGAACAAAGAGGCATATGCCAAAACCAGAGCCAACCAGGCCATCGATCAGAGTCCTCAACCGCAGACTCTGGTTTTGAAGAGAGAGCACGTAGTTGCTAAGAACATTTACACCACCAAGGCCAAATTGGGCGGCAGAATCAGAGACATACAAATCGAATGCGGCCACAATGACGACTTCAGCCGCCTCAGCTTCAGCGTCGACAACAAAAGGGTTCTTCAGATAAAGCGATTGAAGTGGAAGTTCAGAGGAAACGAGCGGATTGAAGTGGACGGTGTGCCGATGCATATCTCATGGGACGTTTACAATTGGCTTTTCGAGAATGACGGCAATGATGGACATGCCGTGTTCATGTTCAGGTTCGAAGAAGACGAGCAAGACATTAACACACAGTTGAGTGTGGGGCATTGGGCGCAGCAGCAGCAGTTCTGGAACTTCGGGATGAATGGGATTGAGTGGAGGAAGATGGGCAAGAGCTTCTCGTCTTCTTCTGTTTCAATGTCGTCTGCGGGGTCTTGTAGCTCGTCGGTAATGGAATGGGCTACGATGGAGGAGAGCGAGGTCAGTGCTGGTCCTACCGGATTTTCTCTGCTCGTTTATGCTTGGAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

353

Amino Acids

39.9

Weight (kDa)

8.82

Isoelectric Point (pI)

68.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 40 - 351 3.3e-77 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25200 AT5G11000
fragaria_vesca FvH4_2g40820
malus_domestica MD08G1059500.v1.1 MD15G1036800.v1.1
prunus_persica Prupe.1G390900_v2.0.a1
pyrus_communis pycom08g04960 pycom15g03410
rosa_chinensis RchiOBHm_Chr6g0299751
rosa_laevigata RLG00000011391
rosa_multiflora Rmu_sc0002895.1_g000019
rosa_roxburghii Rroxscaffold_2G00123250
rosa_rugosa Rorug06G0292100
rosa_samantha Rh6AG402900 Rh6BG411500 Rh6CG417600 Rh6DG404400
rosa_wichuraiana Rw6G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 140
Acc36I ACCTGC 1 cut(s) 140
AccBSI CCGCTC 3 cut(s) 180, 198, 703
AccI GTMKAC 2 cut(s) 414, 645
AccIII TCCGGA 1 cut(s) 371
AcoI YGGCCR 3 cut(s) 112, 193, 607
AcsI RAATTY 1 cut(s) 362
AcuI CTGAAG 3 cut(s) 607, 622, 647
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 6 cut(s) 280, 448, 523, 679, 710, 942
AjnI CCWGG 2 cut(s) 170, 480
AluBI AGCT 4 cut(s) 319, 636, 921, 966
AluI AGCT 4 cut(s) 319, 636, 921, 966
Alw21I GWGCWC 1 cut(s) 534
Alw26I GTCTC 2 cut(s) 435, 582
AlwNI CAGNNNCTG 1 cut(s) 514
Ama87I CYCGRG 1 cut(s) 354
Aor13HI TCCGGA 1 cut(s) 371
AoxI GGCC 5 cut(s) 112, 193, 483, 564, 607
ApeKI GCWGC 3 cut(s) 859, 862, 865
ApoI RAATTY 1 cut(s) 362
ArsI GACNNNNNNTTYG 2 cut(s) 502, 534
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 2 cut(s) 303, 859
AspS9I GGNCC 3 cut(s) 174, 374, 1016
AsuHPI GGTGA 2 cut(s) 118, 160
AsuII TTCGAA 1 cut(s) 807
AvaI CYCGRG 1 cut(s) 354
AvaII GGWCC 3 cut(s) 174, 374, 1016
BbsI GAAGAC 2 cut(s) 819, 921
Bbv12I GWGCWC 1 cut(s) 534
BbvCI CCTCAGC 1 cut(s) 632
BbvI GCAGC 3 cut(s) 871, 874, 877
BccI CCATC 5 cut(s) 164, 494, 773, 904, 985
BceAI ACGGC 5 cut(s) 73, 389, 433, 773, 787
BcgI CGANNNNNNTGC 2 cut(s) 992, 1026
BciT130I CCWGG 2 cut(s) 172, 482
BcoDI GTCTC 2 cut(s) 435, 582
BfoI RGCGCY 1 cut(s) 304
BfuAI ACCTGC 1 cut(s) 140
BglI GCCNNNNNGGC 1 cut(s) 482
BisI GCNGC 9 cut(s) 86, 193, 196, 577, 607, 628, 860, 863, 866
BlsI GCNGC 9 cut(s) 87, 194, 197, 578, 608, 629, 861, 864, 867
Bme1390I CCNGG 2 cut(s) 172, 482
Bme18I GGWCC 3 cut(s) 174, 374, 1016
BmeT110I CYCGRG 1 cut(s) 354
BmgT120I GGNCC 3 cut(s) 174, 374, 1016
BmiI GGNNCC 3 cut(s) 176, 310, 376
BmrFI CCNGG 2 cut(s) 172, 482
BmsI GCATC 1 cut(s) 717
BpiI GAAGAC 2 cut(s) 819, 921
Bpu10I CCTNAGC 1 cut(s) 632
Bpu14I TTCGAA 1 cut(s) 807
Bsa29I ATCGAT 1 cut(s) 489
BsaAI YACGTR 1 cut(s) 535
BsaBI GATNNNNATC 1 cut(s) 731
BsaJI CCNNGG 4 cut(s) 187, 304, 436, 561
BsaWI WCCGGW 2 cut(s) 371, 1022
BsaXI ACNNNNNCTCC 5 cut(s) 5, 32, 35, 62, 92
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 781
Bse8I GATNNNNATC 1 cut(s) 731
BseAI TCCGGA 1 cut(s) 371
BseBI CCWGG 2 cut(s) 172, 482
BseCI ATCGAT 1 cut(s) 489
BseDI CCNNGG 4 cut(s) 187, 304, 436, 561
BseGI GGATG 1 cut(s) 891
BseJI GATNNNNATC 1 cut(s) 731
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 1 cut(s) 646
BseX3I CGGCCG 1 cut(s) 193
BseXI GCAGC 3 cut(s) 871, 874, 877
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 5 cut(s) 114, 195, 485, 566, 609
BshVI ATCGAT 1 cut(s) 489
BsiEI CGRYCG 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 534
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 3 cut(s) 111, 372, 1023
BslFI GGGAC 4 cut(s) 76, 160, 359, 755
BslI CCNNNNNNNGG 1 cut(s) 171
BsmAI GTCTC 2 cut(s) 435, 582
BsmFI GGGAC 4 cut(s) 76, 160, 359, 755
BsmI GAATGC 1 cut(s) 608
BsnI GGCC 5 cut(s) 114, 195, 485, 566, 609
BsoBI CYCGRG 1 cut(s) 354
Bsp119I TTCGAA 1 cut(s) 807
Bsp1286I GDGCHC 1 cut(s) 534
Bsp13I TCCGGA 1 cut(s) 371
Bsp143I GATC 1 cut(s) 490
Bsp19I CCATGG 1 cut(s) 304
BspANI GGCC 5 cut(s) 114, 195, 485, 566, 609
BspCNI CTCAG 1 cut(s) 645
BspDI ATCGAT 1 cut(s) 489
BspEI TCCGGA 1 cut(s) 371
BspLI GGNNCC 3 cut(s) 176, 310, 376
BspMI ACCTGC 1 cut(s) 140
BspT104I TTCGAA 1 cut(s) 807
BsrBI CCGCTC 3 cut(s) 180, 198, 703
BsrDI GCAATG 1 cut(s) 781
BssECI CCNNGG 4 cut(s) 187, 304, 436, 561
BssMI GATC 1 cut(s) 490
BssT1I CCWWGG 2 cut(s) 304, 561
Bst2UI CCWGG 2 cut(s) 172, 482
Bst4CI ACNGT 2 cut(s) 719, 837
Bst6I CTCTTC 1 cut(s) 518
BstBAI YACGTR 1 cut(s) 535
BstBI TTCGAA 1 cut(s) 807
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 2 cut(s) 543, 632
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 1 cut(s) 891
BstH2I RGCGCY 1 cut(s) 304
BstHHI GCGC 2 cut(s) 303, 859
BstKTI GATC 1 cut(s) 493
BstMAI GTCTC 2 cut(s) 435, 582
BstMBI GATC 1 cut(s) 490
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 4 cut(s) 482, 633, 856, 865
BstNI CCWGG 2 cut(s) 172, 482
BstNSI RCATGY 1 cut(s) 788
BstSCI CCNGG 2 cut(s) 170, 480
BstV1I GCAGC 3 cut(s) 871, 874, 877
BstV2I GAAGAC 2 cut(s) 819, 921
BstZI CGGCCG 1 cut(s) 193
Bsu15I ATCGAT 1 cut(s) 489
BsuRI GGCC 5 cut(s) 114, 195, 485, 566, 609
BsuTUI ATCGAT 1 cut(s) 489
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 1 cut(s) 891
BtsIMutI CAGTG 1 cut(s) 1015
BveI ACCTGC 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 321
CaiI CAGNNNCTG 1 cut(s) 514
CciNI GCGGCCGC 1 cut(s) 193
CfoI GCGC 2 cut(s) 303, 859
Cfr13I GGNCC 3 cut(s) 174, 374, 1016
ClaI ATCGAT 1 cut(s) 489
CseI GACGC 1 cut(s) 631
CsiI ACCWGGT 1 cut(s) 170
CviAII CATG 5 cut(s) 305, 424, 738, 785, 796
DdeI CTNAG 2 cut(s) 543, 632
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
EaeI YGGCCR 3 cut(s) 112, 193, 607
EagI CGGCCG 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
EciI GGCGGA 1 cut(s) 38
EclXI CGGCCG 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 304, 561
Eco47I GGWCC 3 cut(s) 174, 374, 1016
Eco52I CGGCCG 1 cut(s) 193
Eco57I CTGAAG 3 cut(s) 607, 622, 647
Eco88I CYCGRG 1 cut(s) 354
EcoRII CCWGG 2 cut(s) 170, 480
EcoT14I CCWWGG 2 cut(s) 304, 561
EcoT22I ATGCAT 1 cut(s) 732
ErhI CCWWGG 2 cut(s) 304, 561
FaeI CATG 5 cut(s) 308, 427, 741, 788, 799
FaqI GGGAC 4 cut(s) 76, 160, 359, 755
FatI CATG 5 cut(s) 304, 423, 737, 784, 795
FauI CCCGC 4 cut(s) 14, 90, 185, 946
FauNDI CATATG 1 cut(s) 460
FblI GTMKAC 2 cut(s) 414, 645
Fnu4HI GCNGC 9 cut(s) 86, 193, 196, 577, 607, 628, 860, 863, 866
FokI GGATG 1 cut(s) 898
Fsp4HI GCNGC 9 cut(s) 86, 193, 196, 577, 607, 628, 860, 863, 866
GlaI GCGC 2 cut(s) 302, 858
GluI GCNGC 9 cut(s) 86, 193, 196, 577, 607, 628, 860, 863, 866
HaeII RGCGCY 1 cut(s) 304
HaeIII GGCC 5 cut(s) 114, 195, 485, 566, 609
HapII CCGG 3 cut(s) 111, 372, 1023
HgaI GACGC 1 cut(s) 631
HhaI GCGC 2 cut(s) 303, 859
Hin1II CATG 5 cut(s) 308, 427, 741, 788, 799
Hin6I GCGC 2 cut(s) 301, 857
HinP1I GCGC 2 cut(s) 301, 857
HincII GTYRAC 2 cut(s) 415, 646
HindII GTYRAC 2 cut(s) 415, 646
HinfI GANTC 4 cut(s) 233, 496, 511, 582
HpaII CCGG 3 cut(s) 111, 372, 1023
HphI GGTGA 2 cut(s) 118, 160
Hpy166II GTNNAC 4 cut(s) 415, 646, 715, 748
Hpy188I TCNGA 5 cut(s) 440, 495, 587, 666, 692
Hpy188III TCNNGA 6 cut(s) 295, 354, 372, 763, 874, 883
Hpy8I GTNNAC 4 cut(s) 415, 646, 715, 748
Hpy99I CGWCG 5 cut(s) 404, 410, 419, 647, 973
HpyAV CCTTC 8 cut(s) 48, 193, 238, 258, 270, 295, 440, 1047
HpyCH4III ACNGT 2 cut(s) 719, 837
HpyCH4IV ACGT 3 cut(s) 399, 534, 744
HpyCH4V TGCA 1 cut(s) 730
HpyF10VI GCNNNNNNNGC 4 cut(s) 482, 633, 856, 865
HpyF3I CTNAG 2 cut(s) 543, 632
HpySE526I ACGT 3 cut(s) 399, 534, 744
Hsp92II CATG 5 cut(s) 308, 427, 741, 788, 799
HspAI GCGC 2 cut(s) 301, 857
Kpn2I TCCGGA 1 cut(s) 371
Kzo9I GATC 1 cut(s) 490
LmnI GCTCC 2 cut(s) 185, 314
Lsp1109I GCAGC 3 cut(s) 871, 874, 877
LweI GCATC 1 cut(s) 717
MabI ACCWGGT 1 cut(s) 170
MaeII ACGT 3 cut(s) 399, 534, 744
MalI GATC 1 cut(s) 492
MbiI CCGCTC 3 cut(s) 180, 198, 703
MboI GATC 1 cut(s) 490
MfeI CAATTG 1 cut(s) 751
MhlI GDGCHC 1 cut(s) 534
MluCI AATT 3 cut(s) 362, 569, 751
MlyI GAGTC 3 cut(s) 227, 505, 505
MmeI TCCRAC 1 cut(s) 91
Mph1103I ATGCAT 1 cut(s) 732
MroI TCCGGA 1 cut(s) 371
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 1 cut(s) 828
MspI CCGG 3 cut(s) 111, 372, 1023
MspR9I CCNGG 2 cut(s) 172, 482
MunI CAATTG 1 cut(s) 751
Mva1269I GAATGC 1 cut(s) 608
MvaI CCWGG 2 cut(s) 172, 482
MwoI GCNNNNNNNGC 4 cut(s) 482, 633, 856, 865
NcoI CCATGG 1 cut(s) 304
NdeI CATATG 1 cut(s) 460
NdeII GATC 1 cut(s) 490
NlaIII CATG 5 cut(s) 308, 427, 741, 788, 799
NlaIV GGNNCC 3 cut(s) 176, 310, 376
NmeAIII GCCGAG 1 cut(s) 168
NotI GCGGCCGC 1 cut(s) 193
NsiI ATGCAT 1 cut(s) 732
NspI RCATGY 1 cut(s) 788
NspV TTCGAA 1 cut(s) 807
PaqCI CACCTGC 1 cut(s) 140
PcsI WCGNNNNNNNCGW 2 cut(s) 405, 813
PctI GAATGC 1 cut(s) 608
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 582
PkrI GCNGC 9 cut(s) 87, 194, 197, 578, 608, 629, 861, 864, 867
PleI GAGTC 3 cut(s) 227, 504, 505
PpsI GAGTC 3 cut(s) 227, 504, 505
Ppu21I YACGTR 1 cut(s) 535
Psp6I CCWGG 2 cut(s) 170, 480
PspGI CCWGG 2 cut(s) 170, 480
PspN4I GGNNCC 3 cut(s) 176, 310, 376
PspPI GGNCC 3 cut(s) 174, 374, 1016
PstNI CAGNNNCTG 1 cut(s) 514
SalI GTCGAC 2 cut(s) 413, 644
SaqAI TTAA 1 cut(s) 828
SatI GCNGC 9 cut(s) 86, 193, 196, 577, 607, 628, 860, 863, 866
Sau3AI GATC 1 cut(s) 490
Sau96I GGNCC 3 cut(s) 174, 374, 1016
SchI GAGTC 3 cut(s) 227, 505, 505
ScrFI CCNGG 2 cut(s) 172, 482
SduI GDGCHC 1 cut(s) 534
SexAI ACCWGGT 1 cut(s) 170
SfaNI GCATC 1 cut(s) 717
SfuI TTCGAA 1 cut(s) 807
SinI GGWCC 3 cut(s) 174, 374, 1016
Sse9I AATT 3 cut(s) 362, 569, 751
StyD4I CCNGG 2 cut(s) 170, 480
StyI CCWWGG 2 cut(s) 304, 561
TaaI ACNGT 2 cut(s) 719, 837
TaiI ACGT 3 cut(s) 402, 537, 747
TaqI TCGA 7 cut(s) 231, 414, 489, 600, 645, 762, 807
TasI AATT 3 cut(s) 362, 569, 751
TauI GCSGC 6 cut(s) 88, 195, 198, 579, 609, 630
TfiI GAWTC 1 cut(s) 582
Tru1I TTAA 1 cut(s) 828
Tru9I TTAA 1 cut(s) 828
TscAI CASTG 1 cut(s) 1015
TseI GCWGC 3 cut(s) 859, 862, 865
TspDTI ATGAA 2 cut(s) 784, 902
TspRI CASTG 1 cut(s) 1015
VpaK11BI GGWCC 3 cut(s) 174, 374, 1016
XapI RAATTY 1 cut(s) 362
XceI RCATGY 1 cut(s) 788
XcmI CCANNNNNNNNNTGG 1 cut(s) 568
XmiI GTMKAC 2 cut(s) 414, 645
XmnI GAANNNNTTC 1 cut(s) 284
Zsp2I ATGCAT 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.