Rh6CG417600

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013041
Physical Location & Seq
Reverse (-)
60118699 .. 60120931
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG417600.1

Sequence Viewer

Length: 768 bp
ATGAGAGCCACCACCGTGGCTTCGCCGTTTTCAACCCAGTCTGGAGCAAGCACCACATGCGTAGCCCGATTCGGCTCCGGACCCGAACCCGCTTCCGCGTTCTACGTCGCCGTCGTAGTTGAGGGCGACGTGACCCTCCTCCTCGGAGATTTGAACAAAGAGGCTTATGCCAAAACCAGAGCCAAACAGGCGCTGGATGAAAGTCCTCAACCGCAGGCTCTGGTTTTGAAGCGAGAGCACGTGGTTGCCAAGAACATTTACACCACCAAGGCCAAATTGGGCGGCAGAATCAGAGACATCCAAATCGATTGCGGCCACAATGACGACTTCAGCCGGCTCACCTTCAGAGTCGACAACAAAAGGGTTCTGCAGATAAAGCGATTGAAGTGGAAATTCAGAGGGAATGAGCGGATTGAGGTGGACGGTCTGCCGATGCATATCTCATGGGACGTCTACAATTGGCTTTTCGAGAATGACAACAATGATGGCCATGCAGTGTTCATGTTCAGGTTCGAAGAAGACGAACAAGACATTAATACCCAATTGAGTGTCGGTCATTGGGCGCAGCAGCAGCAGCAGTTCTGGAATTTCGGGATGAATGGGATTGAGTGGAGGAAGATGGGCAAGAGCTTTTCGTCTTCTTCCGTTTCAATGTCGTCTGCGGGGTCTTGTAGCTCTTCGGTAATGGAATGGGCTACTATGGAGGAGAGCGAGCTCAGCGCTGGTCCTACCGGATTTTCTTTGCTCGTTTATGCTTGGAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

255

Amino Acids

28.75

Weight (kDa)

6.53

Isoelectric Point (pI)

53.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 21 - 254 9.5e-60 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25200 AT5G11000
fragaria_vesca FvH4_2g40820
malus_domestica MD08G1059500.v1.1 MD15G1036800.v1.1
prunus_persica Prupe.1G390900_v2.0.a1
pyrus_communis pycom08g04960 pycom15g03410
rosa_chinensis RchiOBHm_Chr6g0299751
rosa_laevigata RLG00000011391
rosa_multiflora Rmu_sc0002895.1_g000019
rosa_roxburghii Rroxscaffold_2G00123250
rosa_rugosa Rorug06G0292100
rosa_samantha Rh6AG402900 Rh6BG411500 Rh6CG417600 Rh6DG404400
rosa_wichuraiana Rw6G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 453
AccBSI CCGCTC 1 cut(s) 409
AccI GTMKAC 2 cut(s) 351, 453
AccII CGCG 1 cut(s) 98
AccIII TCCGGA 1 cut(s) 77
AciI CCGC 7 cut(s) 90, 96, 212, 282, 312, 409, 662
AcoI YGGCCR 2 cut(s) 313, 487
AcsI RAATTY 2 cut(s) 392, 586
AcuI CTGAAG 2 cut(s) 313, 328
AcvI CACGTG 1 cut(s) 241
AcyI GRCGYC 1 cut(s) 450
AfeI AGCGCT 1 cut(s) 721
AgsI TTSAA 5 cut(s) 33, 154, 229, 385, 651
AjiI CACGTC 1 cut(s) 130
AleI CACNNNNGTG 1 cut(s) 14
AluBI AGCT 3 cut(s) 630, 675, 715
AluI AGCT 3 cut(s) 630, 675, 715
Alw21I GWGCWC 2 cut(s) 240, 717
Alw26I GTCTC 1 cut(s) 288
AlwNI CAGNNNCTG 2 cut(s) 193, 220
Aor13HI TCCGGA 1 cut(s) 77
Aor51HI AGCGCT 1 cut(s) 721
AoxI GGCC 3 cut(s) 270, 313, 487
ApeKI GCWGC 4 cut(s) 565, 568, 571, 574
ApoI RAATTY 2 cut(s) 392, 586
AseI ATTAAT 1 cut(s) 534
AspLEI GCGC 3 cut(s) 193, 565, 722
AspS9I GGNCC 2 cut(s) 80, 725
AsuHPI GGTGA 1 cut(s) 331
AsuII TTCGAA 1 cut(s) 513
AvaII GGWCC 2 cut(s) 80, 725
BalI TGGCCA 1 cut(s) 489
BanII GRGCYC 1 cut(s) 717
BbrPI CACGTG 1 cut(s) 241
BbsI GAAGAC 2 cut(s) 525, 630
Bbv12I GWGCWC 2 cut(s) 240, 717
BbvI GCAGC 4 cut(s) 577, 580, 583, 586
BccI CCATC 2 cut(s) 479, 613
BceAI ACGGC 2 cut(s) 10, 95
BcoDI GTCTC 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 368
BfoI RGCGCY 2 cut(s) 194, 723
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 6 cut(s) 283, 313, 566, 569, 572, 575
BlpI GCTNAGC 1 cut(s) 716
BlsI GCNGC 6 cut(s) 284, 314, 567, 570, 573, 576
Bme18I GGWCC 2 cut(s) 80, 725
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 80, 725
BmiI GGNNCC 2 cut(s) 76, 82
BmrI ACTGGG 1 cut(s) 31
BmsI GCATC 1 cut(s) 423
BmuI ACTGGG 1 cut(s) 31
BpiI GAAGAC 2 cut(s) 525, 630
BpmI CTGGAG 1 cut(s) 63
Bpu1102I GCTNAGC 1 cut(s) 716
Bpu14I TTCGAA 1 cut(s) 513
Bsa29I ATCGAT 1 cut(s) 306
BsaAI YACGTR 1 cut(s) 241
BsaBI GATNNNNATC 1 cut(s) 437
BsaHI GRCGYC 1 cut(s) 450
BsaJI CCNNGG 3 cut(s) 15, 142, 267
BsaWI WCCGGW 2 cut(s) 77, 731
Bse118I RCCGGY 1 cut(s) 333
Bse1I ACTGG 1 cut(s) 37
Bse8I GATNNNNATC 1 cut(s) 437
BseAI TCCGGA 1 cut(s) 77
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 3 cut(s) 15, 142, 267
BseGI GGATG 3 cut(s) 202, 297, 600
BseJI GATNNNNATC 1 cut(s) 437
BseMII CTCAG 1 cut(s) 730
BseNI ACTGG 1 cut(s) 37
BseRI GAGGAG 3 cut(s) 128, 131, 719
BseXI GCAGC 4 cut(s) 577, 580, 583, 586
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 3 cut(s) 272, 315, 489
BshVI ATCGAT 1 cut(s) 306
BsiHKAI GWGCWC 2 cut(s) 240, 717
BsiSI CCGG 3 cut(s) 78, 334, 732
BslFI GGGAC 1 cut(s) 461
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 461
BsnI GGCC 3 cut(s) 272, 315, 489
Bsp119I TTCGAA 1 cut(s) 513
Bsp1286I GDGCHC 2 cut(s) 240, 717
Bsp13I TCCGGA 1 cut(s) 77
Bsp1720I GCTNAGC 1 cut(s) 716
BspACI CCGC 7 cut(s) 90, 96, 212, 282, 312, 409, 662
BspANI GGCC 3 cut(s) 272, 315, 489
BspCNI CTCAG 1 cut(s) 729
BspDI ATCGAT 1 cut(s) 306
BspEI TCCGGA 1 cut(s) 77
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 2 cut(s) 76, 82
BspMAI CTGCAG 1 cut(s) 372
BspQI GCTCTTC 1 cut(s) 682
BspT104I TTCGAA 1 cut(s) 513
BsrBI CCGCTC 1 cut(s) 409
BsrFI RCCGGY 1 cut(s) 333
BsrI ACTGG 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 333
BssECI CCNNGG 3 cut(s) 15, 142, 267
BssNI GRCGYC 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 16, 425
Bst6I CTCTTC 1 cut(s) 682
BstACI GRCGYC 1 cut(s) 450
BstAPI GCANNNNNTGC 1 cut(s) 57
BstBAI YACGTR 1 cut(s) 241
BstBI TTCGAA 1 cut(s) 513
BstC8I GCNNGC 4 cut(s) 49, 216, 335, 713
BstDEI CTNAG 1 cut(s) 716
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 3 cut(s) 202, 297, 600
BstFNI CGCG 1 cut(s) 98
BstH2I RGCGCY 2 cut(s) 194, 723
BstHHI GCGC 3 cut(s) 193, 565, 722
BstMAI GTCTC 1 cut(s) 288
BstMWI GCNNNNNNNGC 6 cut(s) 57, 188, 376, 571, 574, 717
BstNSI RCATGY 1 cut(s) 60
BstSFI CTRYAG 1 cut(s) 368
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 4 cut(s) 577, 580, 583, 586
BstV2I GAAGAC 2 cut(s) 525, 630
BstXI CCANNNNNNTGG 1 cut(s) 16
Bsu15I ATCGAT 1 cut(s) 306
BsuRI GGCC 3 cut(s) 272, 315, 489
BsuTUI ATCGAT 1 cut(s) 306
BtgI CCRYGG 1 cut(s) 15
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 3 cut(s) 202, 297, 600
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 1 cut(s) 501
Cac8I GCNNGC 4 cut(s) 49, 216, 335, 713
CaiI CAGNNNCTG 2 cut(s) 193, 220
CfoI GCGC 3 cut(s) 193, 565, 722
Cfr10I RCCGGY 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 80, 725
ClaI ATCGAT 1 cut(s) 306
CviAII CATG 4 cut(s) 57, 444, 491, 502
DdeI CTNAG 1 cut(s) 716
EaeI YGGCCR 2 cut(s) 313, 487
Eam1104I CTCTTC 1 cut(s) 682
EarI CTCTTC 1 cut(s) 682
Ecl136II GAGCTC 1 cut(s) 715
Eco130I CCWWGG 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 717
Eco47I GGWCC 2 cut(s) 80, 725
Eco47III AGCGCT 1 cut(s) 721
Eco53kI GAGCTC 1 cut(s) 715
Eco57I CTGAAG 2 cut(s) 313, 328
Eco72I CACGTG 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 715
EcoT14I CCWWGG 1 cut(s) 267
EcoT22I ATGCAT 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 717
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 4 cut(s) 60, 447, 494, 505
FaiI YATR 8 cut(s) 58, 168, 438, 445, 492, 503, 701, 753
FaqI GGGAC 1 cut(s) 461
FatI CATG 4 cut(s) 56, 443, 490, 501
FauI CCCGC 2 cut(s) 97, 655
FblI GTMKAC 2 cut(s) 351, 453
Fnu4HI GCNGC 6 cut(s) 283, 313, 566, 569, 572, 575
FokI GGATG 3 cut(s) 209, 284, 607
FriOI GRGCYC 1 cut(s) 717
Fsp4HI GCNGC 6 cut(s) 283, 313, 566, 569, 572, 575
GlaI GCGC 3 cut(s) 192, 564, 721
GluI GCNGC 6 cut(s) 283, 313, 566, 569, 572, 575
GsuI CTGGAG 1 cut(s) 63
HaeII RGCGCY 2 cut(s) 194, 723
HaeIII GGCC 3 cut(s) 272, 315, 489
HapII CCGG 3 cut(s) 78, 334, 732
HhaI GCGC 3 cut(s) 193, 565, 722
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 4 cut(s) 60, 447, 494, 505
Hin6I GCGC 3 cut(s) 191, 563, 720
HinP1I GCGC 3 cut(s) 191, 563, 720
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 3 cut(s) 69, 288, 348
HpaII CCGG 3 cut(s) 78, 334, 732
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 3 cut(s) 352, 421, 454
Hpy188I TCNGA 4 cut(s) 146, 293, 347, 398
Hpy188III TCNNGA 5 cut(s) 42, 78, 469, 583, 592
Hpy8I GTNNAC 3 cut(s) 352, 421, 454
Hpy99I CGWCG 3 cut(s) 110, 116, 131
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 2 cut(s) 16, 425
HpyCH4IV ACGT 4 cut(s) 105, 129, 240, 450
HpyCH4V TGCA 3 cut(s) 370, 436, 494
HpyF10VI GCNNNNNNNGC 6 cut(s) 57, 188, 376, 571, 574, 717
HpyF3I CTNAG 1 cut(s) 716
HpySE526I ACGT 4 cut(s) 105, 129, 240, 450
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 4 cut(s) 60, 447, 494, 505
HspAI GCGC 3 cut(s) 191, 563, 720
Kpn2I TCCGGA 1 cut(s) 77
KroI GCCGGC 1 cut(s) 333
KroNI GCCGGC 1 cut(s) 335
LguI GCTCTTC 1 cut(s) 682
LmnI GCTCC 2 cut(s) 44, 80
Lsp1109I GCAGC 4 cut(s) 577, 580, 583, 586
LweI GCATC 1 cut(s) 423
MaeII ACGT 4 cut(s) 105, 129, 240, 450
MaeIII GTNAC 1 cut(s) 130
MbiI CCGCTC 1 cut(s) 409
MboII GAAGA 6 cut(s) 527, 530, 628, 630, 633, 669
MfeI CAATTG 2 cut(s) 457, 542
MhlI GDGCHC 2 cut(s) 240, 717
MlsI TGGCCA 1 cut(s) 489
MluCI AATT 5 cut(s) 275, 392, 457, 542, 586
MluNI TGGCCA 1 cut(s) 489
MlyI GAGTC 1 cut(s) 357
Mox20I TGGCCA 1 cut(s) 489
Mph1103I ATGCAT 1 cut(s) 438
MroI TCCGGA 1 cut(s) 77
MroNI GCCGGC 1 cut(s) 333
MscI TGGCCA 1 cut(s) 489
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 1 cut(s) 14
Msp20I TGGCCA 1 cut(s) 489
MspI CCGG 3 cut(s) 78, 334, 732
MunI CAATTG 2 cut(s) 457, 542
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 6 cut(s) 57, 188, 376, 571, 574, 717
NaeI GCCGGC 1 cut(s) 335
NgoMIV GCCGGC 1 cut(s) 333
NlaIII CATG 4 cut(s) 60, 447, 494, 505
NlaIV GGNNCC 2 cut(s) 76, 82
NmuCI GTSAC 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 438
NspI RCATGY 1 cut(s) 60
NspV TTCGAA 1 cut(s) 513
OliI CACNNNNGTG 1 cut(s) 14
PciSI GCTCTTC 1 cut(s) 682
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 519
PdiI GCCGGC 1 cut(s) 335
PfeI GAWTC 2 cut(s) 69, 288
PkrI GCNGC 6 cut(s) 284, 314, 567, 570, 573, 576
PleI GAGTC 1 cut(s) 356
PmaCI CACGTG 1 cut(s) 241
PmlI CACGTG 1 cut(s) 241
PpsI GAGTC 1 cut(s) 356
Ppu21I YACGTR 1 cut(s) 241
PshBI ATTAAT 1 cut(s) 534
Psp124BI GAGCTC 1 cut(s) 717
PspCI CACGTG 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 76, 82
PspPI GGNCC 2 cut(s) 80, 725
PstI CTGCAG 1 cut(s) 372
PstNI CAGNNNCTG 2 cut(s) 193, 220
RseI CAYNNNNRTG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 717
SalI GTCGAC 1 cut(s) 350
SapI GCTCTTC 1 cut(s) 682
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 6 cut(s) 283, 313, 566, 569, 572, 575
Sau96I GGNCC 2 cut(s) 80, 725
SchI GAGTC 1 cut(s) 357
SduI GDGCHC 2 cut(s) 240, 717
SfaNI GCATC 1 cut(s) 423
SfcI CTRYAG 1 cut(s) 368
SfuI TTCGAA 1 cut(s) 513
SinI GGWCC 2 cut(s) 80, 725
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 5 cut(s) 275, 392, 457, 542, 586
SsiI CCGC 7 cut(s) 90, 96, 212, 282, 312, 409, 662
SstI GAGCTC 1 cut(s) 717
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 16, 425
TaiI ACGT 4 cut(s) 108, 132, 243, 453
TaqI TCGA 4 cut(s) 306, 351, 468, 513
TaqII GACCGA 1 cut(s) 542
TasI AATT 5 cut(s) 275, 392, 457, 542, 586
TauI GCSGC 2 cut(s) 285, 315
TfiI GAWTC 2 cut(s) 69, 288
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 1 cut(s) 501
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 4 cut(s) 565, 568, 571, 574
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 213, 490, 611
TspGWI ACGGA 1 cut(s) 634
TspRI CASTG 1 cut(s) 501
VpaK11BI GGWCC 2 cut(s) 80, 725
VspI ATTAAT 1 cut(s) 534
XapI RAATTY 2 cut(s) 392, 586
XceI RCATGY 1 cut(s) 60
XcmI CCANNNNNNNNNTGG 2 cut(s) 190, 274
XmiI GTMKAC 2 cut(s) 351, 453
ZraI GACGTC 1 cut(s) 451
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.