pycom15g03410

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013041
Physical Location & Seq
Forward (+)
2098459 .. 2099490
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g03410.1

Sequence Viewer

Length: 1032 bp
ATGTCCCGCCACTACTCCTCCGCTTTCCCTTCTTGCTTCCGCCCGTCCACCTCCATCAACGGTCGCCTCCCACCACCGTCTCCGCCTCCCATCTCCGGGCACCCCAACCTCACCACCTGCCTCTACCACACCGACCACGCCCTCTTCTCCCTCACCTGGTCCCGCTCCTTCCTCGGCCGCTCCCTCCACCTCAACCTCCTCCGCCACTCCTTCGATTCGCCCCTCCCTCCGTCGCTCTCCTCCCCTTCCTTCCACCTCCACATCAAGCCCTTTCTCTTCTGGAAGAAGCACGGCTCCAAGAAGCTCTCCCCCAACATTCTCCTCTTCTGGGACCTCTCCAAAGCCCGGTTCGGCTCCGGACCTGAACCCCAATCCGCGTTCTACATCGCCGTCGTCGTCGACAAAGAGATGACCCTCCTTGTCGGCGATTTGACCCGCGAAGCCTACGCCAAGACCCGGGCCCAAAAATCCGAGACTCCGCAAATCCCAATCTTGAAAAGAGAGCATGTCGTCGCCAAGAAAATCTACAGCACTAAGGCTCGGTTCGGCGGTAAATTGCGGGAGATCCGAATCGATTGCGGGTCAAACGCCGACCCGACCCGGCTCTGCTTTAGTGTCGACGGCCAGGTTGTCCTGCAGATAAAGCGGTTGAAGTGGAAATTCAGGGGGAACGAGCGAATCGAAGTCGACGGGACTCCGCTGCAGATCTCGTGGGACGTCTACAACTGGCTTTTCGAGAGCAACGGCGGCGGCGACGACGGCCACGCGGTGTTCATGTTCAGATTCGAAGAAGACGGGGAGATTAAAGAGAACAATTACCAACTGGGTCATCTGAATTCGTGGAATTTCGGAATGAGCGGGATTGAGTGGCGGAAGATGGGGAAGAGCTTGTCTTCTTCTTCGGTTTCGATGTCGTCGGCGGGGTCTTCCGGTGGAAGTTCGTCGGTGATGGAGTGGGCGAGCACGGAGGAGAGCGAGCTCAGCGGCGGTCCTGCTGGGTTTTCTTTGCTTGTTTATGCCTGGAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

344

Amino Acids

38.4

Weight (kDa)

9.42

Isoelectric Point (pI)

58.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 35 - 342 6.9e-79 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25200 AT5G11000
fragaria_vesca FvH4_2g40820
malus_domestica MD08G1059500.v1.1 MD15G1036800.v1.1
prunus_persica Prupe.1G390900_v2.0.a1
pyrus_communis pycom08g04960 pycom15g03410
rosa_chinensis RchiOBHm_Chr6g0299751
rosa_laevigata RLG00000011391
rosa_multiflora Rmu_sc0002895.1_g000019
rosa_roxburghii Rroxscaffold_2G00123250
rosa_rugosa Rorug06G0292100
rosa_samantha Rh6AG402900 Rh6BG411500 Rh6CG417600 Rh6DG404400
rosa_wichuraiana Rw6G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 125
AatII GACGTC 1 cut(s) 720
Acc36I ACCTGC 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 99
AccBSI CCGCTC 3 cut(s) 165, 180, 858
AccI GTMKAC 4 cut(s) 399, 618, 687, 720
AccII CGCG 3 cut(s) 377, 438, 767
AccIII TCCGGA 1 cut(s) 356
AclWI GGATC 1 cut(s) 559
AcoI YGGCCR 3 cut(s) 175, 622, 760
AcsI RAATTY 3 cut(s) 659, 835, 844
AcyI GRCGYC 1 cut(s) 717
AdeI CACNNNGTG 1 cut(s) 769
AfiI CCNNNNNNNGG 7 cut(s) 95, 96, 156, 328, 345, 456, 1026
AgsI TTSAA 2 cut(s) 496, 652
AjnI CCWGG 3 cut(s) 155, 624, 1019
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AluBI AGCT 3 cut(s) 304, 888, 979
AluI AGCT 3 cut(s) 304, 888, 979
Alw21I GWGCWC 2 cut(s) 965, 981
Alw26I GTCTC 2 cut(s) 84, 467
AlwI GGATC 1 cut(s) 559
Ama87I CYCGRG 1 cut(s) 456
Aor13HI TCCGGA 1 cut(s) 356
AoxI GGCC 4 cut(s) 175, 459, 622, 760
ApaI GGGCCC 1 cut(s) 463
ApeKI GCWGC 1 cut(s) 700
ApoI RAATTY 3 cut(s) 659, 835, 844
AspS9I GGNCC 6 cut(s) 159, 331, 359, 459, 460, 989
AsuC2I CCSGG 5 cut(s) 97, 346, 457, 458, 601
AsuHPI GGTGA 3 cut(s) 103, 145, 958
AsuII TTCGAA 1 cut(s) 786
AvaI CYCGRG 1 cut(s) 456
AvaII GGWCC 4 cut(s) 159, 331, 359, 989
BaeGI GKGCMC 2 cut(s) 102, 463
BanI GGYRCC 1 cut(s) 99
BanII GRGCYC 2 cut(s) 463, 981
BauI CACGAG 1 cut(s) 709
BbsI GAAGAC 3 cut(s) 798, 885, 918
Bbv12I GWGCWC 2 cut(s) 965, 981
BbvI GCAGC 1 cut(s) 687
BccI CCATC 4 cut(s) 62, 98, 871, 943
BceAI ACGGC 5 cut(s) 307, 374, 637, 760, 775
BcgI CGANNNNNNTGC 2 cut(s) 558, 592
BciT130I CCWGG 3 cut(s) 157, 626, 1021
BcnI CCSGG 5 cut(s) 97, 346, 457, 458, 601
BcoDI GTCTC 2 cut(s) 84, 467
BfmI CTRYAG 3 cut(s) 526, 635, 701
BfuAI ACCTGC 1 cut(s) 125
BglII AGATCT 1 cut(s) 705
BisI GCNGC 5 cut(s) 178, 701, 748, 751, 985
BlpI GCTNAGC 1 cut(s) 980
BlsI GCNGC 5 cut(s) 179, 702, 749, 752, 986
Bme1390I CCNGG 8 cut(s) 97, 157, 346, 457, 458, 601, 626, 1021
Bme18I GGWCC 4 cut(s) 159, 331, 359, 989
BmeT110I CYCGRG 1 cut(s) 456
BmgT120I GGNCC 6 cut(s) 159, 331, 359, 459, 460, 989
BmiI GGNNCC 6 cut(s) 101, 161, 295, 332, 355, 461
BmrFI CCNGG 8 cut(s) 97, 157, 346, 457, 458, 601, 626, 1021
BmrI ACTGGG 1 cut(s) 833
BmuI ACTGGG 1 cut(s) 833
BpiI GAAGAC 3 cut(s) 798, 885, 918
Bpu1102I GCTNAGC 1 cut(s) 980
Bpu14I TTCGAA 1 cut(s) 786
BpuMI CCSGG 5 cut(s) 97, 346, 457, 458, 601
Bsa29I ATCGAT 1 cut(s) 573
BsaBI GATNNNNATC 1 cut(s) 569
BsaHI GRCGYC 1 cut(s) 717
BsaJI CCNNGG 2 cut(s) 172, 456
BsaWI WCCGGW 2 cut(s) 356, 929
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 7 cut(s) 95, 96, 156, 328, 345, 456, 1026
Bse1I ACTGG 2 cut(s) 731, 828
Bse8I GATNNNNATC 1 cut(s) 569
BseAI TCCGGA 1 cut(s) 356
BseBI CCWGG 3 cut(s) 157, 626, 1021
BseCI ATCGAT 1 cut(s) 573
BseDI CCNNGG 2 cut(s) 172, 456
BseJI GATNNNNATC 1 cut(s) 569
BseLI CCNNNNNNNGG 7 cut(s) 95, 96, 156, 328, 345, 456, 1026
BseMII CTCAG 1 cut(s) 994
BseNI ACTGG 2 cut(s) 731, 828
BseRI GAGGAG 5 cut(s) 7, 188, 229, 311, 983
BseSI GKGCMC 2 cut(s) 102, 463
BseX3I CGGCCG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 687
BseYI CCCAGC 1 cut(s) 995
Bsh1236I CGCG 3 cut(s) 377, 438, 767
Bsh1285I CGRYCG 2 cut(s) 64, 178
BshFI GGCC 4 cut(s) 177, 461, 624, 762
BshNI GGYRCC 1 cut(s) 99
BshVI ATCGAT 1 cut(s) 573
BsiEI CGRYCG 2 cut(s) 64, 178
BsiHKAI GWGCWC 2 cut(s) 965, 981
BsiHKCI CYCGRG 1 cut(s) 456
BsiSI CCGG 6 cut(s) 96, 346, 357, 457, 601, 930
BslFI GGGAC 4 cut(s) 145, 344, 706, 728
BslI CCNNNNNNNGG 7 cut(s) 95, 96, 156, 328, 345, 456, 1026
BsmAI GTCTC 2 cut(s) 84, 467
BsmBI CGTCTC 1 cut(s) 84
BsmFI GGGAC 4 cut(s) 145, 344, 706, 728
BsnI GGCC 4 cut(s) 177, 461, 624, 762
BsoBI CYCGRG 1 cut(s) 456
Bsp119I TTCGAA 1 cut(s) 786
Bsp120I GGGCCC 1 cut(s) 459
Bsp1286I GDGCHC 4 cut(s) 102, 463, 965, 981
Bsp13I TCCGGA 1 cut(s) 356
Bsp143I GATC 2 cut(s) 564, 705
Bsp1720I GCTNAGC 1 cut(s) 980
BspANI GGCC 4 cut(s) 177, 461, 624, 762
BspCNI CTCAG 1 cut(s) 993
BspDI ATCGAT 1 cut(s) 573
BspEI TCCGGA 1 cut(s) 356
BspFNI CGCG 3 cut(s) 377, 438, 767
BspLI GGNNCC 6 cut(s) 101, 161, 295, 332, 355, 461
BspMAI CTGCAG 2 cut(s) 639, 705
BspMI ACCTGC 1 cut(s) 125
BspPI GGATC 1 cut(s) 559
BspQI GCTCTTC 1 cut(s) 878
BspT104I TTCGAA 1 cut(s) 786
BspT107I GGYRCC 1 cut(s) 99
BsrBI CCGCTC 3 cut(s) 165, 180, 858
BsrI ACTGG 2 cut(s) 731, 828
BssECI CCNNGG 2 cut(s) 172, 456
BssMI GATC 2 cut(s) 564, 705
BssNI GRCGYC 1 cut(s) 717
BssSI CACGAG 1 cut(s) 709
Bst2BI CACGAG 1 cut(s) 709
Bst2UI CCWGG 3 cut(s) 157, 626, 1021
Bst4CI ACNGT 2 cut(s) 62, 78
Bst6I CTCTTC 4 cut(s) 149, 281, 329, 878
BstACI GRCGYC 1 cut(s) 717
BstBI TTCGAA 1 cut(s) 786
BstC8I GCNNGC 2 cut(s) 961, 977
BstDEI CTNAG 2 cut(s) 534, 980
BstENI CCTNNNNNAGG 1 cut(s) 1024
BstFNI CGCG 3 cut(s) 377, 438, 767
BstKTI GATC 2 cut(s) 567, 708
BstMAI GTCTC 2 cut(s) 84, 467
BstMBI GATC 2 cut(s) 564, 705
BstMCI CGRYCG 2 cut(s) 64, 178
BstMWI GCNNNNNNNGC 4 cut(s) 643, 747, 759, 981
BstNI CCWGG 3 cut(s) 157, 626, 1021
BstNSI RCATGY 1 cut(s) 509
BstSCI CCNGG 8 cut(s) 95, 155, 344, 455, 456, 599, 624, 1019
BstSFI CTRYAG 3 cut(s) 526, 635, 701
BstSLI GKGCMC 2 cut(s) 102, 463
BstUI CGCG 3 cut(s) 377, 438, 767
BstV1I GCAGC 1 cut(s) 687
BstV2I GAAGAC 3 cut(s) 798, 885, 918
BstX2I RGATCY 2 cut(s) 564, 705
BstYI RGATCY 2 cut(s) 564, 705
BstZI CGGCCG 1 cut(s) 175
Bsu15I ATCGAT 1 cut(s) 573
BsuRI GGCC 4 cut(s) 177, 461, 624, 762
BsuTUI ATCGAT 1 cut(s) 573
BtgZI GCGATG 1 cut(s) 370
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 2 cut(s) 961, 977
Cfr13I GGNCC 6 cut(s) 159, 331, 359, 459, 460, 989
Cfr9I CCCGGG 1 cut(s) 456
ClaI ATCGAT 1 cut(s) 573
CsiI ACCWGGT 1 cut(s) 155
CviAII CATG 2 cut(s) 506, 775
DdeI CTNAG 2 cut(s) 534, 980
DpnI GATC 2 cut(s) 566, 707
DpnII GATC 2 cut(s) 564, 705
DraIII CACNNNGTG 1 cut(s) 769
EaeI YGGCCR 3 cut(s) 175, 622, 760
EagI CGGCCG 1 cut(s) 175
Eam1104I CTCTTC 4 cut(s) 149, 281, 329, 878
EarI CTCTTC 4 cut(s) 149, 281, 329, 878
EciI GGCGGA 4 cut(s) 29, 72, 191, 886
Ecl136II GAGCTC 1 cut(s) 979
EclXI CGGCCG 1 cut(s) 175
Eco24I GRGCYC 2 cut(s) 463, 981
Eco47I GGWCC 4 cut(s) 159, 331, 359, 989
Eco52I CGGCCG 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 979
Eco88I CYCGRG 1 cut(s) 456
EcoICRI GAGCTC 1 cut(s) 979
EcoNI CCTNNNNNAGG 1 cut(s) 1024
EcoO109I RGGNCCY 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 835
EcoRII CCWGG 3 cut(s) 155, 624, 1019
EcoT38I GRGCYC 2 cut(s) 463, 981
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 2 cut(s) 509, 778
FaiI YATR 3 cut(s) 507, 776, 1017
FaqI GGGAC 4 cut(s) 145, 344, 706, 728
FatI CATG 2 cut(s) 505, 774
FauI CCCGC 7 cut(s) 14, 170, 443, 552, 572, 851, 913
FblI GTMKAC 4 cut(s) 399, 618, 687, 720
Fnu4HI GCNGC 5 cut(s) 178, 701, 748, 751, 985
FriOI GRGCYC 2 cut(s) 463, 981
Fsp4HI GCNGC 5 cut(s) 178, 701, 748, 751, 985
GluI GCNGC 5 cut(s) 178, 701, 748, 751, 985
GsaI CCCAGC 1 cut(s) 999
HaeIII GGCC 4 cut(s) 177, 461, 624, 762
HapII CCGG 6 cut(s) 96, 346, 357, 457, 601, 930
Hin1I GRCGYC 1 cut(s) 717
Hin1II CATG 2 cut(s) 509, 778
HincII GTYRAC 3 cut(s) 400, 619, 688
HindII GTYRAC 3 cut(s) 400, 619, 688
HinfI GANTC 6 cut(s) 215, 475, 570, 678, 694, 783
HpaII CCGG 6 cut(s) 96, 346, 357, 457, 601, 930
HphI GGTGA 3 cut(s) 103, 145, 958
Hpy166II GTNNAC 5 cut(s) 48, 400, 619, 688, 721
Hpy188I TCNGA 5 cut(s) 472, 569, 782, 834, 851
Hpy188III TCNNGA 4 cut(s) 280, 357, 493, 736
Hpy8I GTNNAC 5 cut(s) 48, 400, 619, 688, 721
HpyAV CCTTC 5 cut(s) 39, 178, 220, 255, 259
HpyCH4III ACNGT 2 cut(s) 62, 78
HpyCH4IV ACGT 1 cut(s) 717
HpyCH4V TGCA 2 cut(s) 637, 703
HpyF10VI GCNNNNNNNGC 4 cut(s) 643, 747, 759, 981
HpyF3I CTNAG 2 cut(s) 534, 980
HpySE526I ACGT 1 cut(s) 717
Hsp92I GRCGYC 1 cut(s) 717
Hsp92II CATG 2 cut(s) 509, 778
Kpn2I TCCGGA 1 cut(s) 356
Kzo9I GATC 2 cut(s) 564, 705
LguI GCTCTTC 1 cut(s) 878
LmnI GCTCC 4 cut(s) 170, 185, 299, 359
Lsp1109I GCAGC 1 cut(s) 687
MabI ACCWGGT 1 cut(s) 155
MaeII ACGT 1 cut(s) 717
MalI GATC 2 cut(s) 566, 707
MbiI CCGCTC 3 cut(s) 165, 180, 858
MboI GATC 2 cut(s) 564, 705
MflI RGATCY 2 cut(s) 564, 705
MhlI GDGCHC 4 cut(s) 102, 463, 965, 981
MluCI AATT 5 cut(s) 554, 659, 814, 835, 844
MlyI GAGTC 2 cut(s) 469, 688
MroI TCCGGA 1 cut(s) 356
MseI TTAA 1 cut(s) 804
MspA1I CMGCKG 2 cut(s) 700, 984
MspI CCGG 6 cut(s) 96, 346, 357, 457, 601, 930
MspR9I CCNGG 8 cut(s) 97, 157, 346, 457, 458, 601, 626, 1021
MvaI CCWGG 3 cut(s) 157, 626, 1021
MvnI CGCG 3 cut(s) 377, 438, 767
MwoI GCNNNNNNNGC 4 cut(s) 643, 747, 759, 981
NciI CCSGG 5 cut(s) 97, 346, 457, 458, 601
NdeII GATC 2 cut(s) 564, 705
NlaIII CATG 2 cut(s) 509, 778
NlaIV GGNNCC 6 cut(s) 101, 161, 295, 332, 355, 461
NmeAIII GCCGAG 1 cut(s) 153
NspI RCATGY 1 cut(s) 509
NspV TTCGAA 1 cut(s) 786
PaqCI CACCTGC 1 cut(s) 125
PciSI GCTCTTC 1 cut(s) 878
PcsI WCGNNNNNNNCGW 3 cut(s) 393, 678, 750
PfeI GAWTC 4 cut(s) 215, 570, 678, 783
PkrI GCNGC 5 cut(s) 179, 702, 749, 752, 986
PleI GAGTC 2 cut(s) 469, 688
PpsI GAGTC 2 cut(s) 469, 688
PpuMI RGGWCCY 1 cut(s) 331
Psp124BI GAGCTC 1 cut(s) 981
Psp5II RGGWCCY 1 cut(s) 331
Psp6I CCWGG 3 cut(s) 155, 624, 1019
PspFI CCCAGC 1 cut(s) 995
PspGI CCWGG 3 cut(s) 155, 624, 1019
PspN4I GGNNCC 6 cut(s) 101, 161, 295, 332, 355, 461
PspOMI GGGCCC 1 cut(s) 459
PspPI GGNCC 6 cut(s) 159, 331, 359, 459, 460, 989
PspPPI RGGWCCY 1 cut(s) 331
PstI CTGCAG 2 cut(s) 639, 705
PsuI RGATCY 2 cut(s) 564, 705
SacI GAGCTC 1 cut(s) 981
SalI GTCGAC 3 cut(s) 398, 617, 686
SapI GCTCTTC 1 cut(s) 878
SaqAI TTAA 1 cut(s) 804
SatI GCNGC 5 cut(s) 178, 701, 748, 751, 985
Sau3AI GATC 2 cut(s) 564, 705
Sau96I GGNCC 6 cut(s) 159, 331, 359, 459, 460, 989
SchI GAGTC 2 cut(s) 469, 688
ScrFI CCNGG 8 cut(s) 97, 157, 346, 457, 458, 601, 626, 1021
SduI GDGCHC 4 cut(s) 102, 463, 965, 981
SexAI ACCWGGT 1 cut(s) 155
SfcI CTRYAG 3 cut(s) 526, 635, 701
SfuI TTCGAA 1 cut(s) 786
SinI GGWCC 4 cut(s) 159, 331, 359, 989
SmaI CCCGGG 1 cut(s) 458
Sse9I AATT 5 cut(s) 554, 659, 814, 835, 844
SstI GAGCTC 1 cut(s) 981
StyD4I CCNGG 8 cut(s) 95, 155, 344, 455, 456, 599, 624, 1019
TaaI ACNGT 2 cut(s) 62, 78
TaiI ACGT 1 cut(s) 720
TaqI TCGA 9 cut(s) 213, 399, 573, 618, 681, 687, 735, 786, 908
TasI AATT 5 cut(s) 554, 659, 814, 835, 844
TauI GCSGC 4 cut(s) 180, 750, 753, 987
TfiI GAWTC 4 cut(s) 215, 570, 678, 783
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TseI GCWGC 1 cut(s) 700
TspDTI ATGAA 1 cut(s) 763
TspGWI ACGGA 2 cut(s) 219, 980
TspMI CCCGGG 1 cut(s) 456
VpaK11BI GGWCC 4 cut(s) 159, 331, 359, 989
XagI CCTNNNNNAGG 1 cut(s) 1024
XapI RAATTY 3 cut(s) 659, 835, 844
XceI RCATGY 1 cut(s) 509
XmaI CCCGGG 1 cut(s) 456
XmiI GTMKAC 4 cut(s) 399, 618, 687, 720
ZraI GACGTC 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.