Rh6DG404400

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013041
Physical Location & Seq
Reverse (-)
59219435 .. 59222006
2572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG404400.1

Sequence Viewer

Length: 1062 bp
ATGTCCCGCCACAACTCCTCCTCTACTTTCCCTTCTTGCTTCCGCCCCTCCCCAACCACCGCCCAACACCACCACTCCCCGCCGCCGACGCCTCCTCCCCCAATCTCCGGCCACGCCAACCTCACCACCTGTCTCTACCACACCGACTTCGCCCTCTTCTCCCTCACCTGGTCTCGCTCCTTCCTTGGCGGCCGCTCTCTCCACCTCAACCTCCTCCACCACGCCTTCGACTCCCCCCCACCTCCTTCTTCCTCCCCTTCTTTCCACCTCAACATCATCAAGCCCTTCTTCTTCTGGAAACGCCATGGATCCAAGAAGCTCGCTCCCAATATCCTCATTTTCTGGGACTTCTCCAGAGCCCGATTCGGTTCCGGACCCGAACCCGTTTCCGCGTTCTACGTCGCCGTCGTAGTTGAGGGCGACATGACCCTCCTCCTCGGAGATTTGAACAAAGAGGCTTATGCCAAAACCAGAGCCAAACAGGCGCTGGATGAAAGTCCTCAACCGCAGGCTCTGGTTTTGAAGCGAGAGCACGTGGTTGCCAAGAACATTTACACCACCAAGGCCAAATTGGGCGGCAGAATCAGAGACATCCAAATCGATTGCGGCCACAATGACGACTTCAGCCGGCTCACCTTCAGAGTCGACAACAAAAGGGTTCTGCAGATAAAGCGATTGAAGTGGAAATTCAGAGGGAATGAGCGGATTGAGGTGGACGGTGTGCCGATGCATATCTCATGGGACGTCTACAATTGGCTTTTCGAGAATGACAGCAATGATGGCCATGCAGTGTTCATGTTCAGGTTCGAAGAAGACGAACAAGACATTAATACCCAATTGAGTGTCGGTCATTGGGCGCAGCAGCAGCAGCAGTTCTGGAATTTCGGGATGAATGGGATTGAGTGGAGGAAGATGGGCAAGAGCTTTTCGTCTTCTTCCGTTTCAATGTCGTCTGCGGGGTCTTGTAGCTCTTCGGTAATGGAATGGGCTACTATGGAGGAGAGCGAGCTCAGCGCTGGTCCTACCGGATTTTCTTTGCTCGTTTATGCTTGGAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

353

Amino Acids

40.13

Weight (kDa)

8.99

Isoelectric Point (pI)

68.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 39 - 352 2.4e-75 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25200 AT5G11000
fragaria_vesca FvH4_2g40820
malus_domestica MD08G1059500.v1.1 MD15G1036800.v1.1
prunus_persica Prupe.1G390900_v2.0.a1
pyrus_communis pycom08g04960 pycom15g03410
rosa_chinensis RchiOBHm_Chr6g0299751
rosa_laevigata RLG00000011391
rosa_multiflora Rmu_sc0002895.1_g000019
rosa_roxburghii Rroxscaffold_2G00123250
rosa_rugosa Rorug06G0292100
rosa_samantha Rh6AG402900 Rh6BG411500 Rh6CG417600 Rh6DG404400
rosa_wichuraiana Rw6G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 747
AccBSI CCGCTC 2 cut(s) 195, 703
AccI GTMKAC 2 cut(s) 645, 747
AccII CGCG 1 cut(s) 392
AccIII TCCGGA 1 cut(s) 371
AclWI GGATC 2 cut(s) 303, 316
AcoI YGGCCR 4 cut(s) 109, 190, 607, 781
AcsI RAATTY 2 cut(s) 686, 880
AcuI CTGAAG 2 cut(s) 607, 622
AcvI CACGTG 1 cut(s) 535
AcyI GRCGYC 2 cut(s) 89, 744
AfeI AGCGCT 1 cut(s) 1015
AfiI CCNNNNNNNGG 2 cut(s) 107, 168
AgsI TTSAA 4 cut(s) 448, 523, 679, 945
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 4 cut(s) 319, 924, 969, 1009
AluI AGCT 4 cut(s) 319, 924, 969, 1009
Alw21I GWGCWC 2 cut(s) 534, 1011
Alw26I GTCTC 3 cut(s) 137, 177, 582
AlwI GGATC 2 cut(s) 303, 316
AlwNI CAGNNNCTG 2 cut(s) 487, 514
Aor13HI TCCGGA 1 cut(s) 371
Aor51HI AGCGCT 1 cut(s) 1015
AoxI GGCC 5 cut(s) 109, 190, 564, 607, 781
ApeKI GCWGC 4 cut(s) 859, 862, 865, 868
ApoI RAATTY 2 cut(s) 686, 880
AseI ATTAAT 1 cut(s) 828
AspLEI GCGC 3 cut(s) 487, 859, 1016
AspS9I GGNCC 2 cut(s) 374, 1019
AsuHPI GGTGA 3 cut(s) 115, 157, 625
AsuII TTCGAA 1 cut(s) 807
AvaII GGWCC 2 cut(s) 374, 1019
BalI TGGCCA 1 cut(s) 783
BamHI GGATCC 1 cut(s) 308
BanII GRGCYC 2 cut(s) 361, 1011
BbrPI CACGTG 1 cut(s) 535
BbsI GAAGAC 2 cut(s) 819, 924
Bbv12I GWGCWC 2 cut(s) 534, 1011
BbvI GCAGC 4 cut(s) 871, 874, 877, 880
BccI CCATC 2 cut(s) 773, 907
BceAI ACGGC 1 cut(s) 389
BciT130I CCWGG 1 cut(s) 169
BcoDI GTCTC 3 cut(s) 137, 177, 582
BfmI CTRYAG 1 cut(s) 662
BfoI RGCGCY 2 cut(s) 488, 1017
BglI GCCNNNNNGGC 1 cut(s) 482
BisI GCNGC 9 cut(s) 83, 190, 193, 577, 607, 860, 863, 866, 869
BlpI GCTNAGC 1 cut(s) 1010
BlsI GCNGC 9 cut(s) 84, 191, 194, 578, 608, 861, 864, 867, 870
Bme1390I CCNGG 1 cut(s) 169
Bme18I GGWCC 2 cut(s) 374, 1019
BmgT120I GGNCC 2 cut(s) 374, 1019
BmiI GGNNCC 3 cut(s) 310, 370, 376
BmrFI CCNGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 717
BpiI GAAGAC 2 cut(s) 819, 924
BpmI CTGGAG 1 cut(s) 337
Bpu1102I GCTNAGC 1 cut(s) 1010
Bpu14I TTCGAA 1 cut(s) 807
Bsa29I ATCGAT 1 cut(s) 600
BsaAI YACGTR 1 cut(s) 535
BsaBI GATNNNNATC 1 cut(s) 731
BsaHI GRCGYC 2 cut(s) 89, 744
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 4 cut(s) 184, 304, 436, 561
BsaWI WCCGGW 2 cut(s) 371, 1025
BsaXI ACNNNNNCTCC 5 cut(s) 32, 59, 79, 89, 109
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 168
Bse118I RCCGGY 1 cut(s) 627
Bse3DI GCAATG 1 cut(s) 781
Bse8I GATNNNNATC 1 cut(s) 731
BseAI TCCGGA 1 cut(s) 371
BseBI CCWGG 1 cut(s) 169
BseCI ATCGAT 1 cut(s) 600
BseDI CCNNGG 4 cut(s) 184, 304, 436, 561
BseGI GGATG 3 cut(s) 496, 591, 894
BseJI GATNNNNATC 1 cut(s) 731
BseLI CCNNNNNNNGG 2 cut(s) 107, 168
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 1 cut(s) 1024
BseRI GAGGAG 7 cut(s) 7, 10, 84, 203, 422, 425, 1013
BseX3I CGGCCG 1 cut(s) 190
BseXI GCAGC 4 cut(s) 871, 874, 877, 880
Bsh1236I CGCG 1 cut(s) 392
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 5 cut(s) 111, 192, 566, 609, 783
BshVI ATCGAT 1 cut(s) 600
BsiEI CGRYCG 1 cut(s) 193
BsiHKAI GWGCWC 2 cut(s) 534, 1011
BsiSI CCGG 4 cut(s) 108, 372, 628, 1026
BslFI GGGAC 2 cut(s) 359, 755
BslI CCNNNNNNNGG 2 cut(s) 107, 168
BsmAI GTCTC 3 cut(s) 137, 177, 582
BsmFI GGGAC 2 cut(s) 359, 755
BsnI GGCC 5 cut(s) 111, 192, 566, 609, 783
Bso31I GGTCTC 1 cut(s) 177
Bsp119I TTCGAA 1 cut(s) 807
Bsp1286I GDGCHC 3 cut(s) 361, 534, 1011
Bsp13I TCCGGA 1 cut(s) 371
Bsp143I GATC 1 cut(s) 308
Bsp1720I GCTNAGC 1 cut(s) 1010
Bsp19I CCATGG 1 cut(s) 304
BspANI GGCC 5 cut(s) 111, 192, 566, 609, 783
BspCNI CTCAG 1 cut(s) 1023
BspDI ATCGAT 1 cut(s) 600
BspEI TCCGGA 1 cut(s) 371
BspFNI CGCG 1 cut(s) 392
BspLI GGNNCC 3 cut(s) 310, 370, 376
BspMAI CTGCAG 1 cut(s) 666
BspPI GGATC 2 cut(s) 303, 316
BspQI GCTCTTC 1 cut(s) 976
BspT104I TTCGAA 1 cut(s) 807
BspTNI GGTCTC 1 cut(s) 177
BsrBI CCGCTC 2 cut(s) 195, 703
BsrDI GCAATG 1 cut(s) 781
BsrFI RCCGGY 1 cut(s) 627
BssAI RCCGGY 1 cut(s) 627
BssECI CCNNGG 4 cut(s) 184, 304, 436, 561
BssMI GATC 1 cut(s) 308
BssNI GRCGYC 2 cut(s) 89, 744
BssT1I CCWWGG 3 cut(s) 184, 304, 561
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 719
Bst6I CTCTTC 2 cut(s) 161, 976
BstACI GRCGYC 2 cut(s) 89, 744
BstBAI YACGTR 1 cut(s) 535
BstBI TTCGAA 1 cut(s) 807
BstC8I GCNNGC 4 cut(s) 321, 510, 629, 1007
BstDEI CTNAG 1 cut(s) 1010
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 3 cut(s) 496, 591, 894
BstFNI CGCG 1 cut(s) 392
BstH2I RGCGCY 2 cut(s) 488, 1017
BstHHI GCGC 3 cut(s) 487, 859, 1016
BstKTI GATC 1 cut(s) 311
BstMAI GTCTC 3 cut(s) 137, 177, 582
BstMBI GATC 1 cut(s) 308
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 7 cut(s) 88, 482, 670, 780, 865, 868, 1011
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 662
BstUI CGCG 1 cut(s) 392
BstV1I GCAGC 4 cut(s) 871, 874, 877, 880
BstV2I GAAGAC 2 cut(s) 819, 924
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BstZI CGGCCG 1 cut(s) 190
Bsu15I ATCGAT 1 cut(s) 600
BsuRI GGCC 5 cut(s) 111, 192, 566, 609, 783
BsuTUI ATCGAT 1 cut(s) 600
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 3 cut(s) 496, 591, 894
BtsI GCAGTG 1 cut(s) 795
BtsIMutI CAGTG 1 cut(s) 795
Cac8I GCNNGC 4 cut(s) 321, 510, 629, 1007
CaiI CAGNNNCTG 2 cut(s) 487, 514
CciNI GCGGCCGC 1 cut(s) 190
CfoI GCGC 3 cut(s) 487, 859, 1016
Cfr10I RCCGGY 1 cut(s) 627
Cfr13I GGNCC 2 cut(s) 374, 1019
ClaI ATCGAT 1 cut(s) 600
CseI GACGC 1 cut(s) 97
CsiI ACCWGGT 1 cut(s) 167
CviAII CATG 5 cut(s) 305, 424, 738, 785, 796
DdeI CTNAG 1 cut(s) 1010
DpnI GATC 1 cut(s) 310
DpnII GATC 1 cut(s) 308
EaeI YGGCCR 4 cut(s) 109, 190, 607, 781
EagI CGGCCG 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 161, 976
EarI CTCTTC 2 cut(s) 161, 976
EciI GGCGGA 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 1009
EclXI CGGCCG 1 cut(s) 190
Eco130I CCWWGG 3 cut(s) 184, 304, 561
Eco24I GRGCYC 2 cut(s) 361, 1011
Eco31I GGTCTC 1 cut(s) 177
Eco47I GGWCC 2 cut(s) 374, 1019
Eco47III AGCGCT 1 cut(s) 1015
Eco52I CGGCCG 1 cut(s) 190
Eco53kI GAGCTC 1 cut(s) 1009
Eco57I CTGAAG 2 cut(s) 607, 622
Eco72I CACGTG 1 cut(s) 535
EcoICRI GAGCTC 1 cut(s) 1009
EcoRII CCWGG 1 cut(s) 167
EcoT14I CCWWGG 3 cut(s) 184, 304, 561
EcoT22I ATGCAT 1 cut(s) 732
EcoT38I GRGCYC 2 cut(s) 361, 1011
ErhI CCWWGG 3 cut(s) 184, 304, 561
FaeI CATG 5 cut(s) 308, 427, 741, 788, 799
FaiI YATR 9 cut(s) 306, 425, 462, 732, 739, 786, 797, 995, 1047
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FaqI GGGAC 2 cut(s) 359, 755
FatI CATG 5 cut(s) 304, 423, 737, 784, 795
FauI CCCGC 3 cut(s) 14, 87, 949
FblI GTMKAC 2 cut(s) 645, 747
Fnu4HI GCNGC 9 cut(s) 83, 190, 193, 577, 607, 860, 863, 866, 869
FokI GGATG 3 cut(s) 503, 578, 901
FriOI GRGCYC 2 cut(s) 361, 1011
Fsp4HI GCNGC 9 cut(s) 83, 190, 193, 577, 607, 860, 863, 866, 869
GlaI GCGC 3 cut(s) 486, 858, 1015
GluI GCNGC 9 cut(s) 83, 190, 193, 577, 607, 860, 863, 866, 869
GsuI CTGGAG 1 cut(s) 337
HaeII RGCGCY 2 cut(s) 488, 1017
HaeIII GGCC 5 cut(s) 111, 192, 566, 609, 783
HapII CCGG 4 cut(s) 108, 372, 628, 1026
HgaI GACGC 1 cut(s) 97
HhaI GCGC 3 cut(s) 487, 859, 1016
Hin1I GRCGYC 2 cut(s) 89, 744
Hin1II CATG 5 cut(s) 308, 427, 741, 788, 799
Hin6I GCGC 3 cut(s) 485, 857, 1014
HinP1I GCGC 3 cut(s) 485, 857, 1014
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HinfI GANTC 4 cut(s) 230, 363, 582, 642
HpaII CCGG 4 cut(s) 108, 372, 628, 1026
HphI GGTGA 3 cut(s) 115, 157, 625
Hpy166II GTNNAC 3 cut(s) 646, 715, 748
Hpy188I TCNGA 4 cut(s) 440, 587, 641, 692
Hpy188III TCNNGA 6 cut(s) 295, 354, 372, 763, 877, 886
Hpy8I GTNNAC 3 cut(s) 646, 715, 748
Hpy99I CGWCG 3 cut(s) 91, 404, 410
HpyAV CCTTC 8 cut(s) 42, 190, 235, 255, 267, 295, 646, 1050
HpyCH4III ACNGT 1 cut(s) 719
HpyCH4IV ACGT 3 cut(s) 399, 534, 744
HpyCH4V TGCA 3 cut(s) 664, 730, 788
HpyF10VI GCNNNNNNNGC 7 cut(s) 88, 482, 670, 780, 865, 868, 1011
HpyF3I CTNAG 1 cut(s) 1010
HpySE526I ACGT 3 cut(s) 399, 534, 744
Hsp92I GRCGYC 2 cut(s) 89, 744
Hsp92II CATG 5 cut(s) 308, 427, 741, 788, 799
HspAI GCGC 3 cut(s) 485, 857, 1014
Kpn2I TCCGGA 1 cut(s) 371
KroI GCCGGC 1 cut(s) 627
KroNI GCCGGC 1 cut(s) 629
Kzo9I GATC 1 cut(s) 308
LguI GCTCTTC 1 cut(s) 976
LmnI GCTCC 2 cut(s) 182, 328
Lsp1109I GCAGC 4 cut(s) 871, 874, 877, 880
LweI GCATC 1 cut(s) 717
MabI ACCWGGT 1 cut(s) 167
MaeII ACGT 3 cut(s) 399, 534, 744
MalI GATC 1 cut(s) 310
MbiI CCGCTC 2 cut(s) 195, 703
MboI GATC 1 cut(s) 308
MfeI CAATTG 2 cut(s) 751, 836
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 3 cut(s) 361, 534, 1011
MlsI TGGCCA 1 cut(s) 783
MluCI AATT 5 cut(s) 569, 686, 751, 836, 880
MluNI TGGCCA 1 cut(s) 783
MlyI GAGTC 2 cut(s) 224, 651
Mox20I TGGCCA 1 cut(s) 783
Mph1103I ATGCAT 1 cut(s) 732
MroI TCCGGA 1 cut(s) 371
MroNI GCCGGC 1 cut(s) 627
MscI TGGCCA 1 cut(s) 783
MseI TTAA 1 cut(s) 828
Msp20I TGGCCA 1 cut(s) 783
MspI CCGG 4 cut(s) 108, 372, 628, 1026
MspR9I CCNGG 1 cut(s) 169
MunI CAATTG 2 cut(s) 751, 836
MvaI CCWGG 1 cut(s) 169
MvnI CGCG 1 cut(s) 392
MwoI GCNNNNNNNGC 7 cut(s) 88, 482, 670, 780, 865, 868, 1011
NaeI GCCGGC 1 cut(s) 629
NcoI CCATGG 1 cut(s) 304
NdeII GATC 1 cut(s) 308
NgoMIV GCCGGC 1 cut(s) 627
NlaIII CATG 5 cut(s) 308, 427, 741, 788, 799
NlaIV GGNNCC 3 cut(s) 310, 370, 376
NotI GCGGCCGC 1 cut(s) 190
NsiI ATGCAT 1 cut(s) 732
NspV TTCGAA 1 cut(s) 807
PciSI GCTCTTC 1 cut(s) 976
PcsI WCGNNNNNNNCGW 2 cut(s) 405, 813
PdiI GCCGGC 1 cut(s) 629
PfeI GAWTC 2 cut(s) 363, 582
PkrI GCNGC 9 cut(s) 84, 191, 194, 578, 608, 861, 864, 867, 870
PleI GAGTC 2 cut(s) 224, 650
PmaCI CACGTG 1 cut(s) 535
PmlI CACGTG 1 cut(s) 535
PpsI GAGTC 2 cut(s) 224, 650
Ppu21I YACGTR 1 cut(s) 535
PshBI ATTAAT 1 cut(s) 828
Psp124BI GAGCTC 1 cut(s) 1011
Psp6I CCWGG 1 cut(s) 167
PspCI CACGTG 1 cut(s) 535
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 3 cut(s) 310, 370, 376
PspPI GGNCC 2 cut(s) 374, 1019
PstI CTGCAG 1 cut(s) 666
PstNI CAGNNNCTG 2 cut(s) 487, 514
PsuI RGATCY 1 cut(s) 308
SacI GAGCTC 1 cut(s) 1011
SalI GTCGAC 1 cut(s) 644
SapI GCTCTTC 1 cut(s) 976
SaqAI TTAA 1 cut(s) 828
SatI GCNGC 9 cut(s) 83, 190, 193, 577, 607, 860, 863, 866, 869
Sau3AI GATC 1 cut(s) 308
Sau96I GGNCC 2 cut(s) 374, 1019
SchI GAGTC 2 cut(s) 224, 651
ScrFI CCNGG 1 cut(s) 169
SduI GDGCHC 3 cut(s) 361, 534, 1011
SexAI ACCWGGT 1 cut(s) 167
SfaNI GCATC 1 cut(s) 717
SfcI CTRYAG 1 cut(s) 662
SfuI TTCGAA 1 cut(s) 807
SinI GGWCC 2 cut(s) 374, 1019
Sse9I AATT 5 cut(s) 569, 686, 751, 836, 880
SstI GAGCTC 1 cut(s) 1011
StyD4I CCNGG 1 cut(s) 167
StyI CCWWGG 3 cut(s) 184, 304, 561
TaaI ACNGT 1 cut(s) 719
TaiI ACGT 3 cut(s) 402, 537, 747
TaqI TCGA 5 cut(s) 228, 600, 645, 762, 807
TaqII GACCGA 1 cut(s) 836
TasI AATT 5 cut(s) 569, 686, 751, 836, 880
TauI GCSGC 5 cut(s) 85, 192, 195, 579, 609
TfiI GAWTC 2 cut(s) 363, 582
Tru1I TTAA 1 cut(s) 828
Tru9I TTAA 1 cut(s) 828
TscAI CASTG 1 cut(s) 795
TseI GCWGC 4 cut(s) 859, 862, 865, 868
TspDTI ATGAA 3 cut(s) 507, 784, 905
TspGWI ACGGA 1 cut(s) 928
TspRI CASTG 1 cut(s) 795
VpaK11BI GGWCC 2 cut(s) 374, 1019
VspI ATTAAT 1 cut(s) 828
XapI RAATTY 2 cut(s) 686, 880
XcmI CCANNNNNNNNNTGG 2 cut(s) 484, 568
XmiI GTMKAC 2 cut(s) 645, 747
ZraI GACGTC 1 cut(s) 745
Zsp2I ATGCAT 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.