Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005088

Physical Location & Seq

Genomic Coordinates Forward (+)

3483632 .. 3486267

Gene Structure 2636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11010.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTCTGAAGCAGAAAATAAATTGCCTTTCATACCAGAGGAATGGTCAAATGCAGCAAGTTCTGTTTCCTGCAGTTCGTTGCAACCGGTTATAGCTTTGGTCTGTGGCCCTAAAAACAGTGGCAAAAGCACATTTTCACGCAATCTTGTTGAAGTTCTTCTCCAAAGATACAAAAGGGTTGCTTATTTGGATACTGATGTTGGCCAGCCTGAATTTACTGCACCTGGTTTCCTTTCTCTCACAATTGTTGATAAATCAATTCTAGAATCGGATTGGACAGTTCCATGTGTAAAGACACCAGAGAGATGCTTCTTCTATGGTGATGTTTCTTCAAAGAGGGATCCAAAGGCATATTTAAGATATGTATATACCTTATTCGATTACTATCAGCTACACTTCTGCAAGTCTAGCGAGAACAAAACTGAATTGCCGCTTGTCATTAATACACCAGGATGGGTTAAAGGAATTGGCTATGAGTTATTGGTGGACGTGCTGAGATATGTTTCCCCTTCCCACGTTGTGAAAATTAACATCTCTGCTTACAACAAGAACCTACCAGCTGGGTTGTTCTGGTTAGACGGTAATGATGATGAGACAGCTCATTTGATAGAGATCCAATCTGCTTACCAAGACAGATATAATCAATCCATTTTAATACATAAGGATGCTCGTTTGATGAGGGACATGCGTATAATCGCCTACTTTAGGCAATGCTTTAAAGGAAAAGAAGTAAACACGATCAAAGAACTAACACATGAACTCGCTTCCCATATTCCTTATGAAGTTCCAATATCGAGTTTAACAATCAACCATCTCCATTGTCAGATCCCAAGTTCTGAAGTGTATTATAGTTTGAATGCTTCCATTGTTGGTTTGGGCATTAGCACCGAGGTGTTTGAGGATTTGCCATCATGCGTAGGTCTTGGTAAGTTTCTATTTATCCATTGCAATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000448 GO:0000460 GO:0000463 GO:0000466 GO:0000469 GO:0000470 GO:0000478 GO:0000479 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051731 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLP1_P

Protein Analysis

318

Amino Acids

36.03

Weight (kDa)

6.0

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP1_P	PF16575	36 - 190	5.9e-38	mRNA cleavage and polyadenylation factor CLP1 P-loop
NOL9_C	PF25467	256 - 346	3.3e-30	NOL9-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11010 AT5G11010 AT5G11010 AT5G11010
fragaria_vesca	FvH4_5g16020 FvH4_5g16020 FvH4_5g16020 FvH4_5g16020
malus_domestica	MD06G1183600.v1.1 MD14G1057100.v1.1 MD14G1189700.v1.1
prunus_persica	Prupe.5G161200_v2.0.a1 Prupe.5G182300_v2.0.a1 Prupe.5G182300_v2.0.a1
pyrus_communis	pycom06g16270 pycom14g15720
rosa_chinensis	RchiOBHm_Chr7g0180051
rosa_laevigata	RLG00000005299
rosa_multiflora	Rmu_co8044072.1_g000001 Rmu_sc0002219.1_g000023 Rmu_sc0017616.1_g000001 Rmu_ssc0000119.1_g000025
rosa_roxburghii	Rroxscaffold_3G00273170
rosa_rugosa	Rorug06G0430200 Rorug06G0430200
rosa_samantha	Rh7AG030400 Rh7BG030300 Rh7CG032100 Rh7DG031100
rosa_wichuraiana	Rw7G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	431
AclWI	GGATC	4 cut(s)	335, 348, 607, 820
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	2 cut(s)	27, 858
AdeI	CACNNNGTG	1 cut(s)	520
AfiI	CCNNNNNNNGG	1 cut(s)	705
AgeI	ACCGGT	1 cut(s)	85
AgsI	TTSAA	3 cut(s)	152, 333, 856
AjiI	CACGTC	1 cut(s)	490
AjnI	CCWGG	2 cut(s)	223, 448
AleI	CACNNNNGTG	1 cut(s)	890
AluBI	AGCT	4 cut(s)	95, 391, 560, 599
AluI	AGCT	4 cut(s)	95, 391, 560, 599
Alw26I	GTCTC	1 cut(s)	587
AlwI	GGATC	4 cut(s)	335, 348, 607, 820
AoxI	GGCC	2 cut(s)	106, 202
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	212
ArsI	GACNNNNNNTTYG	2 cut(s)	586, 618
AseI	ATTAAT	1 cut(s)	441
AsiGI	ACCGGT	1 cut(s)	85
Asp700I	GAANNNNTTC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	332
BaeI	ACNNNNGTAYC	2 cut(s)	183, 216
BalI	TGGCCA	1 cut(s)	204
BamHI	GGATCC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	3 cut(s)	447, 819, 916
BciT130I	CCWGG	2 cut(s)	225, 450
BciVI	GTATCC	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	587
BfaI	CTAG	2 cut(s)	263, 408
BfmI	CTRYAG	1 cut(s)	70
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	2 cut(s)	54, 431
BlsI	GCNGC	2 cut(s)	55, 432
Bme1390I	CCNGG	2 cut(s)	225, 450
BmgBI	CACGTC	1 cut(s)	490
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	2 cut(s)	225, 450
BmsI	GCATC	2 cut(s)	296, 655
BsaBI	GATNNNNATC	2 cut(s)	384, 611
BsaJI	CCNNGG	1 cut(s)	888
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	705
Bse118I	RCCGGY	1 cut(s)	85
Bse3DI	GCAATG	2 cut(s)	716, 943
Bse8I	GATNNNNATC	2 cut(s)	384, 611
BseBI	CCWGG	2 cut(s)	225, 450
BseDI	CCNNGG	1 cut(s)	888
BseGI	GGATG	2 cut(s)	458, 670
BseJI	GATNNNNATC	2 cut(s)	384, 611
BseLI	CCNNNNNNNGG	1 cut(s)	705
BseMI	GCAATG	2 cut(s)	716, 943
BseMII	CTCAG	1 cut(s)	485
BseXI	GCAGC	1 cut(s)	65
BseYI	CCCAGC	1 cut(s)	560
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	108, 204
BshTI	ACCGGT	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	1 cut(s)	705
BsmAI	GTCTC	1 cut(s)	587
BsmFI	GGGAC	1 cut(s)	695
BsmI	GAATGC	1 cut(s)	862
BsnI	GGCC	2 cut(s)	108, 204
Bsp143I	GATC	4 cut(s)	340, 612, 738, 825
BspACI	CCGC	1 cut(s)	431
BspANI	GGCC	2 cut(s)	108, 204
BspCNI	CTCAG	1 cut(s)	486
BspLI	GGNNCC	1 cut(s)	342
BspMAI	CTGCAG	1 cut(s)	74
BspPI	GGATC	4 cut(s)	335, 348, 607, 820
BsrDI	GCAATG	2 cut(s)	716, 943
BsrFI	RCCGGY	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	888
BssMI	GATC	4 cut(s)	340, 612, 738, 825
Bst2UI	CCWGG	2 cut(s)	225, 450
Bst4CI	ACNGT	3 cut(s)	119, 280, 581
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	494
BstENI	CCTNNNNNAGG	1 cut(s)	703
BstF5I	GGATG	2 cut(s)	458, 670
BstKTI	GATC	4 cut(s)	343, 615, 741, 828
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	4 cut(s)	340, 612, 738, 825
BstMWI	GCNNNNNNNGC	1 cut(s)	408
BstNI	CCWGG	2 cut(s)	225, 450
BstNSI	RCATGY	1 cut(s)	688
BstSCI	CCNGG	2 cut(s)	223, 448
BstSFI	CTRYAG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	65
BstX2I	RGATCY	3 cut(s)	340, 612, 825
BstXI	CCANNNNNNTGG	1 cut(s)	42
BstYI	RGATCY	3 cut(s)	340, 612, 825
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	108, 204
BtrI	CACGTC	1 cut(s)	490
BtsCI	GGATG	2 cut(s)	458, 670
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	107
CsiI	ACCWGGT	1 cut(s)	223
CspAI	ACCGGT	1 cut(s)	85
CviAII	CATG	4 cut(s)	285, 685, 755, 912
CviJI	RGCY	8 cut(s)	95, 108, 204, 208, 391, 471, 560, 599
CviKI_1	RGCY	8 cut(s)	95, 108, 204, 208, 391, 471, 560, 599
DdeI	CTNAG	1 cut(s)	494
DpnI	GATC	4 cut(s)	342, 614, 740, 827
DpnII	GATC	4 cut(s)	340, 612, 738, 825
DraI	TTTAAA	1 cut(s)	718
DraIII	CACNNNGTG	1 cut(s)	520
EaeI	YGGCCR	1 cut(s)	202
Eco57I	CTGAAG	2 cut(s)	27, 858
EcoNI	CCTNNNNNAGG	1 cut(s)	703
EcoRII	CCWGG	2 cut(s)	223, 448
FaeI	CATG	4 cut(s)	288, 688, 758, 915
FalI	AAGNNNNNCTT	2 cut(s)	166, 198
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	4 cut(s)	284, 684, 754, 911
Fnu4HI	GCNGC	2 cut(s)	54, 431
FokI	GGATG	2 cut(s)	465, 677
Fsp4HI	GCNGC	2 cut(s)	54, 431
FspBI	CTAG	2 cut(s)	263, 408
GluI	GCNGC	2 cut(s)	54, 431
GsaI	CCCAGC	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	108, 204
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	4 cut(s)	288, 688, 758, 915
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	487, 733
Hpy188I	TCNGA	4 cut(s)	7, 271, 825, 838
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	2 cut(s)	487, 733
HpyAV	CCTTC	1 cut(s)	519
HpyCH4III	ACNGT	3 cut(s)	119, 280, 581
HpyCH4IV	ACGT	2 cut(s)	489, 516
HpyCH4V	TGCA	6 cut(s)	53, 72, 82, 221, 402, 948
HpyF10VI	GCNNNNNNNGC	1 cut(s)	408
HpyF3I	CTNAG	1 cut(s)	494
HpySE526I	ACGT	2 cut(s)	489, 516
Hsp92II	CATG	4 cut(s)	288, 688, 758, 915
Kzo9I	GATC	4 cut(s)	340, 612, 738, 825
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	2 cut(s)	296, 655
MabI	ACCWGGT	1 cut(s)	223
MaeI	CTAG	2 cut(s)	263, 408
MaeII	ACGT	2 cut(s)	489, 516
MalI	GATC	4 cut(s)	342, 614, 740, 827
MboI	GATC	4 cut(s)	340, 612, 738, 825
MboII	GAAGA	3 cut(s)	149, 304, 321
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	3 cut(s)	340, 612, 825
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	7 cut(s)	20, 212, 243, 258, 425, 465, 525
MluNI	TGGCCA	1 cut(s)	204
MnlI	CCTC	5 cut(s)	31, 330, 672, 883, 892
Mox20I	TGGCCA	1 cut(s)	204
MroXI	GAANNNNTTC	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	7 cut(s)	356, 441, 459, 528, 653, 717, 800
MslI	CAYNNNNRTG	3 cut(s)	451, 663, 890
Msp20I	TGGCCA	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	560
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	2 cut(s)	225, 450
MunI	CAATTG	1 cut(s)	243
Mva1269I	GAATGC	1 cut(s)	862
MvaI	CCWGG	2 cut(s)	225, 450
MwoI	GCNNNNNNNGC	1 cut(s)	408
NdeII	GATC	4 cut(s)	340, 612, 738, 825
NlaIII	CATG	4 cut(s)	288, 688, 758, 915
NlaIV	GGNNCC	1 cut(s)	342
NspI	RCATGY	1 cut(s)	688
OliI	CACNNNNGTG	1 cut(s)	890
PctI	GAATGC	1 cut(s)	862
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	266
PinAI	ACCGGT	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	55, 432
PshBI	ATTAAT	1 cut(s)	441
Psp6I	CCWGG	2 cut(s)	223, 448
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	2 cut(s)	223, 448
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	74
PsuI	RGATCY	3 cut(s)	340, 612, 825
PvuII	CAGCTG	1 cut(s)	560
RseI	CAYNNNNRTG	3 cut(s)	451, 663, 890
SaqAI	TTAA	7 cut(s)	356, 441, 459, 528, 653, 717, 800
SatI	GCNGC	2 cut(s)	54, 431
Sau3AI	GATC	4 cut(s)	340, 612, 738, 825
Sau96I	GGNCC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	225, 450
SexAI	ACCWGGT	1 cut(s)	223
SfaNI	GCATC	2 cut(s)	296, 655
SfcI	CTRYAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	3 cut(s)	451, 663, 890
Sse9I	AATT	7 cut(s)	20, 212, 243, 258, 425, 465, 525
SsiI	CCGC	1 cut(s)	431
SspMI	CTAG	2 cut(s)	263, 408
StyD4I	CCNGG	2 cut(s)	223, 448
TaaI	ACNGT	3 cut(s)	119, 280, 581
TaiI	ACGT	2 cut(s)	492, 519
TaqI	TCGA	2 cut(s)	378, 794
TasI	AATT	7 cut(s)	20, 212, 243, 258, 425, 465, 525
TauI	GCSGC	1 cut(s)	433
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	7 cut(s)	356, 441, 459, 528, 653, 717, 800
Tru9I	TTAA	7 cut(s)	356, 441, 459, 528, 653, 717, 800
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	3 cut(s)	19, 771, 795
TspRI	CASTG	1 cut(s)	124
VspI	ATTAAT	1 cut(s)	441
XagI	CCTNNNNNAGG	1 cut(s)	703
XapI	RAATTY	1 cut(s)	212
XbaI	TCTAGA	1 cut(s)	262
XceI	RCATGY	1 cut(s)	688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	871
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	2 cut(s)	263, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.