Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002219.1

Orthogroup ID

OG0005088

Physical Location & Seq

Genomic Coordinates Forward (+)

82943 .. 87928

Gene Structure 4986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002219.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

atgggaaaaatttcagtggagcgctatgtgatatcattgagtcaaccagatttgcttgatctgcttgtgcatcctgcaccgtcagatgatgtaagcatggagaaagttgaagatttgaatgaaatcaattatgcagagtatatgggaagctggaacctcagtgatgaaatacgaatttatggacgtgcaaacctgaatagggcctttgatggtgatatagtggcagtccagcttctgcctggggagcaatggcatgaggataaatctatggctatagcagccgaagaggatgaagaaggtgttcatctggttcctggcagtgctgatgatgttcctagaaaaacagctcaaggctcaaccacaagattcgctggagaaacatgttctatttcaagttgtccatttggccgtattgttggtataataaagtataagaaagttgggtacttggatacagatgtgggtcaacctgagtttagtcctcctgggtttctatctcttactgtagtagatgaagttactccagatttgacaatcccacatttgaagacggcggagagatgtttgttctttggcgatgtttcttcgaaaaggaatccaacaacatacttaaattgtatatgtgctttatatgattactatcggaaggagtactgcaacagtgataactctaataatattggattgcctctcgttgtgaatacacctggatgggtgaaaggtattggctatgatattttggtggatatgttgaagtatatttcccctacccatgttgttaaaataaacatatctgctcagagtaagaatctaccagatgggcgattctggttagatgaggattatgatggtatggtaaatctaacagagatcagttcagctcgtcaggactctttgaatagatcggttctagtccaaaaggatgcacggctgctgcgcgatatacgtttaatggcttatttcaggcagtgcttttcaagtaacttgaacatttctacaatcaaagaacttgctaatgctttggcatctcaccctccttatgaagttccaatatctagcattaagattaggcatctccattgtcaggtcccaggtactgagatcttctatagtttgaatggaagcattgttggcttggcagttagcactgaaggctcaaaagatttaccatggtgtgttggtcttggaattgtgaggagcattgacacactcaaaggcttgctatatgtgataacacctgttccacaaggcactctggaaaatgtggatcttctgctgcagggttttatccaaattcctactagtttgttgcaggtccaggggagcagatcgccttatatgtctgcaaatgttttgtcttcgagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000448 GO:0000460 GO:0000463 GO:0000466 GO:0000469 GO:0000470 GO:0000478 GO:0000479 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051731 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLP1_P

Protein Analysis

455

Amino Acids

50.31

Weight (kDa)

4.98

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11010 AT5G11010 AT5G11010 AT5G11010
fragaria_vesca	FvH4_5g16020 FvH4_5g16020 FvH4_5g16020 FvH4_5g16020
malus_domestica	MD06G1183600.v1.1 MD14G1057100.v1.1 MD14G1189700.v1.1
prunus_persica	Prupe.5G161200_v2.0.a1 Prupe.5G182300_v2.0.a1 Prupe.5G182300_v2.0.a1
pyrus_communis	pycom06g16270 pycom14g15720
rosa_chinensis	RchiOBHm_Chr7g0180051
rosa_laevigata	RLG00000005299
rosa_multiflora	Rmu_co8044072.1_g000001 Rmu_sc0002219.1_g000023 Rmu_sc0017616.1_g000001 Rmu_ssc0000119.1_g000025
rosa_roxburghii	Rroxscaffold_3G00273170
rosa_rugosa	Rorug06G0430200 Rorug06G0430200
rosa_samantha	Rh7AG030400 Rh7BG030300 Rh7CG032100 Rh7DG031100
rosa_wichuraiana	Rw7G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1303
AccII	CGCG	1 cut(s)	939
AciI	CCGC	1 cut(s)	554
AclWI	GGATC	1 cut(s)	1275
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	3 cut(s)	9, 174, 1293
AcuI	CTGAAG	1 cut(s)	1170
AfaI	GTAC	3 cut(s)	446, 653, 1096
AfeI	AGCGCT	1 cut(s)	23
AfiI	CCNNNNNNNGG	2 cut(s)	199, 1084
AflIII	ACRYGT	1 cut(s)	380
AgsI	TTSAA	9 cut(s)	110, 118, 393, 547, 754, 898, 978, 988, 1117
AhlI	ACTAGT	1 cut(s)	1301
AjiI	CACGTC	1 cut(s)	185
AjnI	CCWGG	6 cut(s)	238, 313, 484, 706, 1090, 1317
AluBI	AGCT	5 cut(s)	150, 232, 347, 881, 1365
AluI	AGCT	5 cut(s)	150, 232, 347, 881, 1365
AlwI	GGATC	1 cut(s)	1275
AlwNI	CAGNNNCTG	2 cut(s)	235, 1097
Aor51HI	AGCGCT	1 cut(s)	23
AoxI	GGCC	2 cut(s)	201, 406
ApeKI	GCWGC	4 cut(s)	278, 931, 934, 1276
ApoI	RAATTY	3 cut(s)	9, 174, 1293
ArsI	GACNNNNNNTTYG	1 cut(s)	1340
Asp700I	GAANNNNTTC	2 cut(s)	10, 300
AspLEI	GCGC	2 cut(s)	24, 939
AspS9I	GGNCC	3 cut(s)	201, 1087, 1315
AsuHPI	GGTGA	3 cut(s)	224, 727, 1022
AsuII	TTCGAA	1 cut(s)	587
AvaII	GGWCC	2 cut(s)	1087, 1315
BaeI	ACNNNNGTAYC	2 cut(s)	444, 477
BbsI	GAAGAC	2 cut(s)	554, 1350
BbvI	GCAGC	4 cut(s)	290, 918, 921, 1263
BccI	CCATC	4 cut(s)	203, 705, 812, 842
BceAI	ACGGC	3 cut(s)	393, 567, 944
BciT130I	CCWGG	6 cut(s)	240, 315, 486, 708, 1092, 1319
BciVI	GTATCC	1 cut(s)	445
BcuI	ACTAGT	1 cut(s)	1301
BfaI	CTAG	5 cut(s)	336, 911, 1056, 1302, 1366
BfmI	CTRYAG	4 cut(s)	273, 504, 1108, 1277
BfoI	RGCGCY	1 cut(s)	25
BfuAI	ACCTGC	1 cut(s)	1303
BfuI	GTATCC	1 cut(s)	445
BglII	AGATCT	1 cut(s)	1101
BisI	GCNGC	4 cut(s)	279, 932, 935, 1277
BlsI	GCNGC	4 cut(s)	280, 933, 936, 1278
BmcAI	AGTACT	1 cut(s)	653
Bme1390I	CCNGG	6 cut(s)	240, 315, 486, 708, 1092, 1319
Bme18I	GGWCC	2 cut(s)	1087, 1315
BmgBI	CACGTC	1 cut(s)	185
BmgT120I	GGNCC	3 cut(s)	201, 1087, 1315
BmiI	GGNNCC	3 cut(s)	155, 312, 1089
BmrFI	CCNGG	6 cut(s)	240, 315, 486, 708, 1092, 1319
BmsI	GCATC	4 cut(s)	79, 913, 1034, 1081
BpiI	GAAGAC	2 cut(s)	554, 1350
BpmI	CTGGAG	2 cut(s)	393, 507
Bpu14I	TTCGAA	1 cut(s)	587
BpuEI	CTTGAG	1 cut(s)	333
BsaBI	GATNNNNATC	1 cut(s)	639
BsaJI	CCNNGG	5 cut(s)	239, 485, 1090, 1169, 1318
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 1084
Bse3DI	GCAATG	1 cut(s)	254
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	6 cut(s)	240, 315, 486, 708, 1092, 1319
BseDI	CCNNGG	5 cut(s)	239, 485, 1090, 1169, 1318
BseGI	GGATG	4 cut(s)	70, 295, 716, 928
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	2 cut(s)	199, 1084
BseMI	GCAATG	1 cut(s)	254
BseMII	CTCAG	4 cut(s)	172, 462, 812, 1089
BseRI	GAGGAG	1 cut(s)	1210
BseXI	GCAGC	4 cut(s)	290, 918, 921, 1263
BsgI	GTGCAG	1 cut(s)	60
Bsh1236I	CGCG	1 cut(s)	939
BshFI	GGCC	2 cut(s)	203, 408
BslFI	GGGAC	1 cut(s)	1073
BslI	CCNNNNNNNGG	2 cut(s)	199, 1084
BsmFI	GGGAC	1 cut(s)	1073
BsnI	GGCC	2 cut(s)	203, 408
Bsp119I	TTCGAA	1 cut(s)	587
Bsp143I	GATC	6 cut(s)	58, 870, 902, 1101, 1267, 1328
Bsp19I	CCATGG	1 cut(s)	1169
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	2 cut(s)	203, 408
BspCNI	CTCAG	4 cut(s)	171, 463, 811, 1090
BspFNI	CGCG	1 cut(s)	939
BspLI	GGNNCC	3 cut(s)	155, 312, 1089
BspMAI	CTGCAG	1 cut(s)	1281
BspMI	ACCTGC	1 cut(s)	1303
BspPI	GGATC	1 cut(s)	1275
BspT104I	TTCGAA	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	254
BssECI	CCNNGG	5 cut(s)	239, 485, 1090, 1169, 1318
BssMI	GATC	6 cut(s)	58, 870, 902, 1101, 1267, 1328
BssT1I	CCWWGG	1 cut(s)	1169
Bst2UI	CCWGG	6 cut(s)	240, 315, 486, 708, 1092, 1319
Bst4CI	ACNGT	3 cut(s)	81, 505, 662
Bst6I	CTCTTC	1 cut(s)	279
BstBI	TTCGAA	1 cut(s)	587
BstC8I	GCNNGC	1 cut(s)	1220
BstDEI	CTNAG	4 cut(s)	158, 471, 798, 1098
BstDSI	CCRYGG	1 cut(s)	1169
BstF5I	GGATG	4 cut(s)	70, 295, 716, 928
BstFNI	CGCG	1 cut(s)	939
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	2 cut(s)	24, 939
BstKTI	GATC	6 cut(s)	61, 873, 905, 1104, 1270, 1331
BstMBI	GATC	6 cut(s)	58, 870, 902, 1101, 1267, 1328
BstMWI	GCNNNNNNNGC	5 cut(s)	61, 244, 278, 1131, 1152
BstNI	CCWGG	6 cut(s)	240, 315, 486, 708, 1092, 1319
BstNSI	RCATGY	1 cut(s)	384
BstSCI	CCNGG	6 cut(s)	238, 313, 484, 706, 1090, 1317
BstSFI	CTRYAG	4 cut(s)	273, 504, 1108, 1277
BstUI	CGCG	1 cut(s)	939
BstV1I	GCAGC	4 cut(s)	290, 918, 921, 1263
BstV2I	GAAGAC	2 cut(s)	554, 1350
BstX2I	RGATCY	2 cut(s)	1101, 1267
BstYI	RGATCY	2 cut(s)	1101, 1267
BsuI	GTATCC	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	203, 408
BtgI	CCRYGG	1 cut(s)	1169
BtgZI	GCGATG	1 cut(s)	591
BtrI	CACGTC	1 cut(s)	185
BtsCI	GGATG	4 cut(s)	70, 295, 716, 928
BtsI	GCAGTG	2 cut(s)	325, 974
BtsIMutI	CAGTG	6 cut(s)	21, 166, 325, 667, 974, 1146
BveI	ACCTGC	1 cut(s)	1303
Cac8I	GCNNGC	1 cut(s)	1220
CaiI	CAGNNNCTG	2 cut(s)	235, 1097
CfoI	GCGC	2 cut(s)	24, 939
Cfr13I	GGNCC	3 cut(s)	201, 1087, 1315
Csp6I	GTAC	3 cut(s)	445, 652, 1095
CviAII	CATG	5 cut(s)	97, 254, 381, 773, 1170
CviQI	GTAC	3 cut(s)	445, 652, 1095
DdeI	CTNAG	4 cut(s)	158, 471, 798, 1098
DpnI	GATC	6 cut(s)	60, 872, 904, 1103, 1269, 1330
DpnII	GATC	6 cut(s)	58, 870, 902, 1101, 1267, 1328
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
EciI	GGCGGA	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	1169
Eco32I	GATATC	1 cut(s)	33
Eco47I	GGWCC	2 cut(s)	1087, 1315
Eco47III	AGCGCT	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	1170
EcoO109I	RGGNCCY	2 cut(s)	201, 1087
EcoRII	CCWGG	6 cut(s)	238, 313, 484, 706, 1090, 1317
EcoRV	GATATC	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	1169
ErhI	CCWWGG	1 cut(s)	1169
FaeI	CATG	5 cut(s)	100, 257, 384, 776, 1173
FaqI	GGGAC	1 cut(s)	1073
FatI	CATG	5 cut(s)	96, 253, 380, 772, 1169
Fnu4HI	GCNGC	4 cut(s)	279, 932, 935, 1277
FokI	GGATG	4 cut(s)	57, 302, 723, 935
Fsp4HI	GCNGC	4 cut(s)	279, 932, 935, 1277
FspBI	CTAG	5 cut(s)	336, 911, 1056, 1302, 1366
GlaI	GCGC	2 cut(s)	23, 938
GluI	GCNGC	4 cut(s)	279, 932, 935, 1277
GsuI	CTGGAG	2 cut(s)	393, 507
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	2 cut(s)	203, 408
HhaI	GCGC	2 cut(s)	24, 939
Hin1II	CATG	5 cut(s)	100, 257, 384, 776, 1173
Hin6I	GCGC	2 cut(s)	22, 937
HinP1I	GCGC	2 cut(s)	22, 937
HincII	GTYRAC	2 cut(s)	44, 467
HindII	GTYRAC	2 cut(s)	44, 467
HinfI	GANTC	6 cut(s)	40, 366, 595, 808, 825, 890
HphI	GGTGA	3 cut(s)	224, 727, 1022
Hpy166II	GTNNAC	2 cut(s)	44, 467
Hpy188I	TCNGA	3 cut(s)	85, 645, 801
Hpy188III	TCNNGA	3 cut(s)	524, 887, 1256
Hpy8I	GTNNAC	2 cut(s)	44, 467
HpyAV	CCTTC	3 cut(s)	290, 640, 1145
HpyCH4III	ACNGT	3 cut(s)	81, 505, 662
HpyCH4IV	ACGT	2 cut(s)	184, 946
HpyCH4V	TGCA	9 cut(s)	70, 77, 134, 188, 657, 926, 1279, 1312, 1346
HpyF10VI	GCNNNNNNNGC	5 cut(s)	61, 244, 278, 1131, 1152
HpyF3I	CTNAG	4 cut(s)	158, 471, 798, 1098
HpySE526I	ACGT	2 cut(s)	184, 946
Hsp92II	CATG	5 cut(s)	100, 257, 384, 776, 1173
HspAI	GCGC	2 cut(s)	22, 937
Kzo9I	GATC	6 cut(s)	58, 870, 902, 1101, 1267, 1328
LmnI	GCTCC	4 cut(s)	19, 244, 1197, 1323
Lsp1109I	GCAGC	4 cut(s)	290, 918, 921, 1263
LweI	GCATC	4 cut(s)	79, 913, 1034, 1081
MaeI	CTAG	5 cut(s)	336, 911, 1056, 1302, 1366
MaeII	ACGT	2 cut(s)	184, 946
MaeIII	GTNAC	2 cut(s)	517, 980
MalI	GATC	6 cut(s)	60, 872, 904, 1103, 1269, 1330
MboI	GATC	6 cut(s)	58, 870, 902, 1101, 1267, 1328
MboII	GAAGA	8 cut(s)	122, 296, 305, 559, 576, 1096, 1262, 1350
MflI	RGATCY	2 cut(s)	1101, 1267
MluCI	AATT	6 cut(s)	9, 127, 174, 613, 1188, 1293
MlyI	GAGTC	2 cut(s)	49, 884
MmeI	TCCRAC	1 cut(s)	623
MnlI	CCTC	8 cut(s)	167, 250, 280, 492, 699, 832, 1044, 1188
MroXI	GAANNNNTTC	2 cut(s)	10, 300
MseI	TTAA	4 cut(s)	611, 780, 950, 1062
MslI	CAYNNNNRTG	1 cut(s)	709
MspR9I	CCNGG	6 cut(s)	240, 315, 486, 708, 1092, 1319
MvaI	CCWGG	6 cut(s)	240, 315, 486, 708, 1092, 1319
MvnI	CGCG	1 cut(s)	939
MwoI	GCNNNNNNNGC	5 cut(s)	61, 244, 278, 1131, 1152
NcoI	CCATGG	1 cut(s)	1169
NdeII	GATC	6 cut(s)	58, 870, 902, 1101, 1267, 1328
NlaIII	CATG	5 cut(s)	100, 257, 384, 776, 1173
NlaIV	GGNNCC	3 cut(s)	155, 312, 1089
NspI	RCATGY	1 cut(s)	384
NspV	TTCGAA	1 cut(s)	587
PciI	ACATGT	1 cut(s)	380
PdmI	GAANNNNTTC	2 cut(s)	10, 300
PfeI	GAWTC	4 cut(s)	366, 595, 808, 825
PkrI	GCNGC	4 cut(s)	280, 933, 936, 1278
PleI	GAGTC	2 cut(s)	48, 884
PpsI	GAGTC	2 cut(s)	48, 884
PpuMI	RGGWCCY	1 cut(s)	1087
PscI	ACATGT	1 cut(s)	380
Psp5II	RGGWCCY	1 cut(s)	1087
Psp6I	CCWGG	6 cut(s)	238, 313, 484, 706, 1090, 1317
PspGI	CCWGG	6 cut(s)	238, 313, 484, 706, 1090, 1317
PspN4I	GGNNCC	3 cut(s)	155, 312, 1089
PspPI	GGNCC	3 cut(s)	201, 1087, 1315
PspPPI	RGGWCCY	1 cut(s)	1087
PstI	CTGCAG	1 cut(s)	1281
PstNI	CAGNNNCTG	2 cut(s)	235, 1097
PsuI	RGATCY	2 cut(s)	1101, 1267
RsaI	GTAC	3 cut(s)	446, 653, 1096
RsaNI	GTAC	3 cut(s)	445, 652, 1095
RseI	CAYNNNNRTG	1 cut(s)	709
SaqAI	TTAA	4 cut(s)	611, 780, 950, 1062
SatI	GCNGC	4 cut(s)	279, 932, 935, 1277
Sau3AI	GATC	6 cut(s)	58, 870, 902, 1101, 1267, 1328
Sau96I	GGNCC	3 cut(s)	201, 1087, 1315
ScaI	AGTACT	1 cut(s)	653
SchI	GAGTC	2 cut(s)	49, 884
ScrFI	CCNGG	6 cut(s)	240, 315, 486, 708, 1092, 1319
SfaNI	GCATC	4 cut(s)	79, 913, 1034, 1081
SfcI	CTRYAG	4 cut(s)	273, 504, 1108, 1277
SfuI	TTCGAA	1 cut(s)	587
SinI	GGWCC	2 cut(s)	1087, 1315
SmiMI	CAYNNNNRTG	1 cut(s)	709
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
SpeI	ACTAGT	1 cut(s)	1301
Sse9I	AATT	6 cut(s)	9, 127, 174, 613, 1188, 1293
SsiI	CCGC	1 cut(s)	554
SspI	AATATT	1 cut(s)	679
SspMI	CTAG	5 cut(s)	336, 911, 1056, 1302, 1366
StyD4I	CCNGG	6 cut(s)	238, 313, 484, 706, 1090, 1317
StyI	CCWWGG	1 cut(s)	1169
TaaI	ACNGT	3 cut(s)	81, 505, 662
TaiI	ACGT	2 cut(s)	187, 949
TaqI	TCGA	2 cut(s)	587, 1361
TasI	AATT	6 cut(s)	9, 127, 174, 613, 1188, 1293
TatI	WGTACW	1 cut(s)	651
TfiI	GAWTC	4 cut(s)	366, 595, 808, 825
Tru1I	TTAA	4 cut(s)	611, 780, 950, 1062
Tru9I	TTAA	4 cut(s)	611, 780, 950, 1062
TscAI	CASTG	6 cut(s)	21, 166, 325, 667, 974, 1153
TseI	GCWGC	4 cut(s)	278, 931, 934, 1276
TspDTI	ATGAA	6 cut(s)	135, 180, 293, 306, 528, 1056
TspRI	CASTG	6 cut(s)	21, 166, 325, 667, 974, 1153
VpaK11BI	GGWCC	2 cut(s)	1087, 1315
XapI	RAATTY	3 cut(s)	9, 174, 1293
XceI	RCATGY	1 cut(s)	384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XmnI	GAANNNNTTC	2 cut(s)	10, 300
XspI	CTAG	5 cut(s)	336, 911, 1056, 1302, 1366
ZrmI	AGTACT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.