Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005088

Physical Location & Seq

Genomic Coordinates Forward (+)

15227394 .. 15231366

Gene Structure 3973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G182300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCTTCACGTTCAGAACCCGAAAACCCGTCGCCGAACATTTACATACCGCCAGAGTGGTCCGAGGCCGCAGACTGTATAGCATACGACTCAGTCACTTCGCCGCCTCCCATTGCCATAGTATGTGGCGCCAAAAACTGCGGAAAATCCACCTTTTCCCGCTACCTCCTGAACATTCTGCTCCAGAGGTATAAAAAAGTTGGTTACTTGGATACAGATGTTGGTCAACCTGAGTTTAGTCCACCTGGTTTTCTATCTCTCACTGTGGTAGATGAAGTGACTCCAGATTTGACAATCCCACATCTGAAGACACCGGAGAGATGTCTTTTCTTCGGTGATGTTTCTTCGAAGAGGAATCCTACAACATACTTGAATTATATATTTGCTTTATATGATTACTATCAGAAGGAATACTGCTTGTTTGACAAGAGTGCTAGCCCTGCTAAAGTTGGATTGCCTCTTGTTGTGAATACTCCTGGCTGGGTGAAAGGTGTTGGTTATGATATATTGGTGGATATGTTGAAGTATATGGCCCCTACCCATGTTGTTAAAATAAACATATCTGCTGAGAGTAAGAATCTACCATGTGGGGCATTCTGGTTAGATGAGGATCATGATGGGATGCTAAATCTAATAGAGATCAATTCAGCTCGTCAGGACTCTTTCAATAGATCGGTTCTAGTACAAAAGGATGCGCGCCTGTTGCGTGATGTACGAATAATGGCTTATTTCAGACAGTGCTTTTCAAGTAACCTGAACATTACTACTATTAAAGAACTGGCTCATGCTTTGGCCTCTCACCCTCCTTATGAAGTTCCAATATCTAGCATTAAGATTAGACATCTGCATTGCCAGGTCCCAGGTTCTGAGATCTTCTATAGTTTGAACGCAACCATTGTTGGCTTGGCAGTTAGCTCTGAAAGAACGGAAGATTTACCTTGGTGTGTTGGTCTTGGAATTGTGAGAGGCATTGACACATTCAAAGGCTTGGTATATGTGATAACACCTGTTCCAAGAGGCACTCTGGAAAAGGTCAATCTTCTTCTGCAAGGTTTTATCCAAATTCCTACTGGTTTGTTGCAGGTCCAGGGGTGCATATCACCTTATATGTCTGCGAATGTTTTGTCTGCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000448 GO:0000460 GO:0000463 GO:0000466 GO:0000469 GO:0000470 GO:0000478 GO:0000479 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051731 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLP1_P

Protein Analysis

379

Amino Acids

41.92

Weight (kDa)

6.18

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11010 AT5G11010 AT5G11010 AT5G11010
fragaria_vesca	FvH4_5g16020 FvH4_5g16020 FvH4_5g16020 FvH4_5g16020
malus_domestica	MD06G1183600.v1.1 MD14G1057100.v1.1 MD14G1189700.v1.1
prunus_persica	Prupe.5G161200_v2.0.a1 Prupe.5G182300_v2.0.a1 Prupe.5G182300_v2.0.a1
pyrus_communis	pycom06g16270 pycom14g15720
rosa_chinensis	RchiOBHm_Chr7g0180051
rosa_laevigata	RLG00000005299
rosa_multiflora	Rmu_co8044072.1_g000001 Rmu_sc0002219.1_g000023 Rmu_sc0017616.1_g000001 Rmu_ssc0000119.1_g000025
rosa_roxburghii	Rroxscaffold_3G00273170
rosa_rugosa	Rorug06G0430200 Rorug06G0430200
rosa_samantha	Rh7AG030400 Rh7BG030300 Rh7CG032100 Rh7DG031100
rosa_wichuraiana	Rw7G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1072
AccB1I	GGYRCC	1 cut(s)	128
AccII	CGCG	1 cut(s)	697
AciI	CCGC	5 cut(s)	50, 69, 104, 141, 160
AclWI	GGATC	1 cut(s)	618
AcsI	RAATTY	1 cut(s)	1062
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	2 cut(s)	684, 714
AgsI	TTSAA	6 cut(s)	373, 523, 667, 747, 886, 982
AjnI	CCWGG	5 cut(s)	244, 475, 852, 859, 1086
AluBI	AGCT	3 cut(s)	650, 915, 1134
AluI	AGCT	3 cut(s)	650, 915, 1134
AlwI	GGATC	1 cut(s)	618
AlwNI	CAGNNNCTG	1 cut(s)	866
AoxI	GGCC	3 cut(s)	66, 531, 792
ApoI	RAATTY	1 cut(s)	1062
ArsI	GACNNNNNNTTYG	3 cut(s)	271, 303, 1109
AspLEI	GCGC	3 cut(s)	131, 697, 699
AspS9I	GGNCC	4 cut(s)	60, 532, 856, 1084
AsuHPI	GGTGA	4 cut(s)	347, 496, 791, 1092
AsuII	TTCGAA	1 cut(s)	347
AsuNHI	GCTAGC	1 cut(s)	434
AvaII	GGWCC	3 cut(s)	60, 856, 1084
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BanI	GGYRCC	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	314
BccI	CCATC	1 cut(s)	611
BciT130I	CCWGG	5 cut(s)	246, 477, 854, 861, 1088
BciVI	GTATCC	1 cut(s)	205
BfaI	CTAG	3 cut(s)	435, 680, 825
BfmI	CTRYAG	1 cut(s)	877
BfoI	RGCGCY	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	1072
BfuI	GTATCC	1 cut(s)	205
BglII	AGATCT	1 cut(s)	870
BisI	GCNGC	2 cut(s)	69, 104
BlsI	GCNGC	2 cut(s)	70, 105
Bme1390I	CCNGG	5 cut(s)	246, 477, 854, 861, 1088
Bme18I	GGWCC	3 cut(s)	60, 856, 1084
BmgT120I	GGNCC	4 cut(s)	60, 532, 856, 1084
BmiI	GGNNCC	3 cut(s)	130, 534, 858
BmrFI	CCNGG	5 cut(s)	246, 477, 854, 861, 1088
BmsI	GCATC	2 cut(s)	612, 682
BmtI	GCTAGC	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	314
BpmI	CTGGAG	2 cut(s)	167, 267
Bpu14I	TTCGAA	1 cut(s)	347
BsaBI	GATNNNNATC	2 cut(s)	399, 609
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	4 cut(s)	63, 859, 938, 1087
BsaWI	WCCGGW	1 cut(s)	313
Bse1I	ACTGG	2 cut(s)	783, 1075
Bse3DI	GCAATG	2 cut(s)	111, 847
Bse8I	GATNNNNATC	2 cut(s)	399, 609
BseBI	CCWGG	5 cut(s)	246, 477, 854, 861, 1088
BseDI	CCNNGG	4 cut(s)	63, 859, 938, 1087
BseGI	GGATG	2 cut(s)	627, 697
BseJI	GATNNNNATC	2 cut(s)	399, 609
BseMI	GCAATG	2 cut(s)	111, 847
BseMII	CTCAG	4 cut(s)	105, 222, 558, 858
BseNI	ACTGG	2 cut(s)	783, 1075
BsePI	GCGCGC	1 cut(s)	695
BseYI	CCCAGC	1 cut(s)	480
Bsh1236I	CGCG	1 cut(s)	697
BshFI	GGCC	3 cut(s)	68, 533, 794
BshNI	GGYRCC	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	842
BsmFI	GGGAC	1 cut(s)	842
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	3 cut(s)	68, 533, 794
Bsp119I	TTCGAA	1 cut(s)	347
Bsp143I	GATC	4 cut(s)	610, 639, 671, 870
BspACI	CCGC	5 cut(s)	50, 69, 104, 141, 160
BspANI	GGCC	3 cut(s)	68, 533, 794
BspCNI	CTCAG	4 cut(s)	104, 223, 559, 859
BspFNI	CGCG	1 cut(s)	697
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	3 cut(s)	130, 534, 858
BspMI	ACCTGC	1 cut(s)	1072
BspOI	GCTAGC	1 cut(s)	438
BspPI	GGATC	1 cut(s)	618
BspT104I	TTCGAA	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	128
BsrDI	GCAATG	2 cut(s)	111, 847
BsrI	ACTGG	2 cut(s)	783, 1075
BssECI	CCNNGG	4 cut(s)	63, 859, 938, 1087
BssHII	GCGCGC	1 cut(s)	695
BssMI	GATC	4 cut(s)	610, 639, 671, 870
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	938
Bst2UI	CCWGG	5 cut(s)	246, 477, 854, 861, 1088
Bst4CI	ACNGT	3 cut(s)	77, 265, 738
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	347
BstC8I	GCNNGC	3 cut(s)	436, 697, 1132
BstDEI	CTNAG	4 cut(s)	91, 231, 567, 867
BstF5I	GGATG	2 cut(s)	627, 697
BstFNI	CGCG	1 cut(s)	697
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	3 cut(s)	131, 697, 699
BstKTI	GATC	4 cut(s)	613, 642, 674, 873
BstMBI	GATC	4 cut(s)	610, 639, 671, 870
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 703
BstNI	CCWGG	5 cut(s)	246, 477, 854, 861, 1088
BstSCI	CCNGG	5 cut(s)	244, 475, 852, 859, 1086
BstSFI	CTRYAG	1 cut(s)	877
BstUI	CGCG	1 cut(s)	697
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	870
BstYI	RGATCY	1 cut(s)	870
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	3 cut(s)	68, 533, 794
BtsCI	GGATG	2 cut(s)	627, 697
BtsIMutI	CAGTG	2 cut(s)	261, 743
BveI	ACCTGC	1 cut(s)	1072
Cac8I	GCNNGC	3 cut(s)	436, 697, 1132
CaiI	CAGNNNCTG	1 cut(s)	866
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	3 cut(s)	131, 697, 699
Cfr13I	GGNCC	4 cut(s)	60, 532, 856, 1084
CsiI	ACCWGGT	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	683, 713
CviAII	CATG	4 cut(s)	542, 585, 614, 785
CviQI	GTAC	2 cut(s)	683, 713
DdeI	CTNAG	4 cut(s)	91, 231, 567, 867
DinI	GGCGCC	1 cut(s)	130
DpnI	GATC	4 cut(s)	612, 641, 673, 872
DpnII	GATC	4 cut(s)	610, 639, 671, 870
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	938
Eco47I	GGWCC	3 cut(s)	60, 856, 1084
Eco57I	CTGAAG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	856
EcoRII	CCWGG	5 cut(s)	244, 475, 852, 859, 1086
EcoT14I	CCWWGG	1 cut(s)	938
EgeI	GGCGCC	1 cut(s)	130
EheI	GGCGCC	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	938
FaeI	CATG	4 cut(s)	545, 588, 617, 788
FaqI	GGGAC	1 cut(s)	842
FatI	CATG	4 cut(s)	541, 584, 613, 784
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	2 cut(s)	69, 104
FokI	GGATG	2 cut(s)	634, 704
Fsp4HI	GCNGC	2 cut(s)	69, 104
FspBI	CTAG	3 cut(s)	435, 680, 825
GlaI	GCGC	3 cut(s)	130, 696, 698
GluI	GCNGC	2 cut(s)	69, 104
GsaI	CCCAGC	1 cut(s)	484
GsuI	CTGGAG	2 cut(s)	167, 267
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	3 cut(s)	68, 533, 794
HapII	CCGG	1 cut(s)	314
HhaI	GCGC	3 cut(s)	131, 697, 699
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	4 cut(s)	545, 588, 617, 788
Hin6I	GCGC	3 cut(s)	129, 695, 697
HinP1I	GCGC	3 cut(s)	129, 695, 697
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
HinfI	GANTC	5 cut(s)	89, 280, 355, 577, 659
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	4 cut(s)	347, 496, 791, 1092
Hpy166II	GTNNAC	2 cut(s)	227, 242
Hpy188I	TCNGA	7 cut(s)	16, 64, 306, 405, 734, 868, 919
Hpy188III	TCNNGA	6 cut(s)	169, 184, 284, 614, 656, 1025
Hpy8I	GTNNAC	2 cut(s)	227, 242
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	3 cut(s)	77, 265, 738
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	5 cut(s)	847, 1048, 1081, 1095, 1130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 703
HpyF3I	CTNAG	4 cut(s)	91, 231, 567, 867
HpySE526I	ACGT	1 cut(s)	10
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	4 cut(s)	545, 588, 617, 788
HspAI	GCGC	3 cut(s)	129, 695, 697
KasI	GGCGCC	1 cut(s)	128
Kzo9I	GATC	4 cut(s)	610, 639, 671, 870
LmnI	GCTCC	1 cut(s)	186
LweI	GCATC	2 cut(s)	612, 682
MabI	ACCWGGT	1 cut(s)	244
MaeI	CTAG	3 cut(s)	435, 680, 825
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	4 cut(s)	94, 203, 277, 749
MalI	GATC	4 cut(s)	612, 641, 673, 872
MboI	GATC	4 cut(s)	610, 639, 671, 870
MboII	GAAGA	8 cut(s)	319, 322, 336, 361, 865, 941, 1031, 1034
MflI	RGATCY	1 cut(s)	870
MluCI	AATT	4 cut(s)	373, 643, 957, 1062
Mly113I	GGCGCC	1 cut(s)	129
MlyI	GAGTC	3 cut(s)	83, 274, 653
MmeI	TCCRAC	1 cut(s)	430
MseI	TTAA	3 cut(s)	549, 771, 831
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	5 cut(s)	246, 477, 854, 861, 1088
Mva1269I	GAATGC	1 cut(s)	593
MvaI	CCWGG	5 cut(s)	246, 477, 854, 861, 1088
MvnI	CGCG	1 cut(s)	697
MwoI	GCNNNNNNNGC	2 cut(s)	440, 703
NarI	GGCGCC	1 cut(s)	129
NdeII	GATC	4 cut(s)	610, 639, 671, 870
NheI	GCTAGC	1 cut(s)	434
NlaIII	CATG	4 cut(s)	545, 588, 617, 788
NlaIV	GGNNCC	3 cut(s)	130, 534, 858
NmuCI	GTSAC	2 cut(s)	94, 277
NspV	TTCGAA	1 cut(s)	347
PagI	TCATGA	1 cut(s)	613
PauI	GCGCGC	1 cut(s)	695
PctI	GAATGC	1 cut(s)	593
PfeI	GAWTC	2 cut(s)	355, 577
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	70, 105
PleI	GAGTC	3 cut(s)	83, 274, 653
PluTI	GGCGCC	1 cut(s)	132
PpsI	GAGTC	3 cut(s)	83, 274, 653
PpuMI	RGGWCCY	1 cut(s)	856
Psp5II	RGGWCCY	1 cut(s)	856
Psp6I	CCWGG	5 cut(s)	244, 475, 852, 859, 1086
PspFI	CCCAGC	1 cut(s)	480
PspGI	CCWGG	5 cut(s)	244, 475, 852, 859, 1086
PspN4I	GGNNCC	3 cut(s)	130, 534, 858
PspPI	GGNCC	4 cut(s)	60, 532, 856, 1084
PspPPI	RGGWCCY	1 cut(s)	856
PstNI	CAGNNNCTG	1 cut(s)	866
PsuI	RGATCY	1 cut(s)	870
PsyI	GACNNNGTC	1 cut(s)	92
PteI	GCGCGC	1 cut(s)	695
RsaI	GTAC	2 cut(s)	684, 714
RsaNI	GTAC	2 cut(s)	683, 713
SaqAI	TTAA	3 cut(s)	549, 771, 831
SatI	GCNGC	2 cut(s)	69, 104
Sau3AI	GATC	4 cut(s)	610, 639, 671, 870
Sau96I	GGNCC	4 cut(s)	60, 532, 856, 1084
SchI	GAGTC	3 cut(s)	83, 274, 653
ScrFI	CCNGG	5 cut(s)	246, 477, 854, 861, 1088
SexAI	ACCWGGT	1 cut(s)	244
SfaNI	GCATC	2 cut(s)	612, 682
SfcI	CTRYAG	1 cut(s)	877
SfoI	GGCGCC	1 cut(s)	130
SfuI	TTCGAA	1 cut(s)	347
SinI	GGWCC	3 cut(s)	60, 856, 1084
Sse9I	AATT	4 cut(s)	373, 643, 957, 1062
SsiI	CCGC	5 cut(s)	50, 69, 104, 141, 160
SspDI	GGCGCC	1 cut(s)	128
SspMI	CTAG	3 cut(s)	435, 680, 825
StyD4I	CCNGG	5 cut(s)	244, 475, 852, 859, 1086
StyI	CCWWGG	1 cut(s)	938
TaaI	ACNGT	3 cut(s)	77, 265, 738
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	347
TasI	AATT	4 cut(s)	373, 643, 957, 1062
TatI	WGTACW	1 cut(s)	682
TauI	GCSGC	2 cut(s)	71, 106
TfiI	GAWTC	2 cut(s)	355, 577
Tru1I	TTAA	3 cut(s)	549, 771, 831
Tru9I	TTAA	3 cut(s)	549, 771, 831
TscAI	CASTG	2 cut(s)	268, 743
TseFI	GTSAC	2 cut(s)	94, 277
Tsp45I	GTSAC	2 cut(s)	94, 277
TspDTI	ATGAA	2 cut(s)	288, 825
TspGWI	ACGGA	1 cut(s)	941
TspRI	CASTG	2 cut(s)	268, 743
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	3 cut(s)	60, 856, 1084
XapI	RAATTY	1 cut(s)	1062
XcmI	CCANNNNNNNNNTGG	2 cut(s)	901, 1067
XspI	CTAG	3 cut(s)	435, 680, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.