Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005088

Physical Location & Seq

Genomic Coordinates Forward (+)

20618078 .. 20619864

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g16270.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGACGATCGATGATGCTATGCTAAATCTGATAGAGATCAATTCAGCTCGTCAGGACTCTTTCAATAGATCGGTTCTAGTACAAAAGGATGCACGCCTGTTGCGTGATGTACAAATACTGGCTTATTTCAGGCAGTGCTTTTCAAGTAGCCTAAACATTACTACAATCAAAGAACTTGCTAATGCTCTGGCCTCTCAACCTCCTTATGAAGTTCCAATATCTAGCATCAAGATTAGACATCTCCATTGTCAGGTCCCAAGTGCTGAGAGCTTCTACAGTTTGAACGCAACCATTGTTGGCTTGGCAGTTAGCTCTGAAGGATCGAAAGATTTACCTTGGTGTGTTGGTCTTGGAATTGTGAGAGGCATTGACACATTCAAAGGCTTGCTATATGTGATAACACCTGTTCCAAGAGGCACTCTGGAGAAGGTCAATCTTTTCCTGCAAGGTTATATCCAAATTCCTACTGTGTTGTTGCAGGTAACTGAACCCCTTCCATGTAATACATGTTTCAGAACAATTGTTTGCTTCTTCATAGTCTCTCACATGCATTCAAGTTTGGATTCTTTGCCCCTTTCCAAATACAATATGATCTTAGAGAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000448 GO:0000460 GO:0000463 GO:0000466 GO:0000469 GO:0000470 GO:0000478 GO:0000479 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051731 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLP1_P

Protein Analysis

203

Amino Acids

22.55

Weight (kDa)

6.89

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11010 AT5G11010 AT5G11010 AT5G11010
fragaria_vesca	FvH4_5g16020 FvH4_5g16020 FvH4_5g16020 FvH4_5g16020
malus_domestica	MD06G1183600.v1.1 MD14G1057100.v1.1 MD14G1189700.v1.1
prunus_persica	Prupe.5G161200_v2.0.a1 Prupe.5G182300_v2.0.a1 Prupe.5G182300_v2.0.a1
pyrus_communis	pycom06g16270 pycom14g15720
rosa_chinensis	RchiOBHm_Chr7g0180051
rosa_laevigata	RLG00000005299
rosa_multiflora	Rmu_co8044072.1_g000001 Rmu_sc0002219.1_g000023 Rmu_sc0017616.1_g000001 Rmu_ssc0000119.1_g000025
rosa_roxburghii	Rroxscaffold_3G00273170
rosa_rugosa	Rorug06G0430200 Rorug06G0430200
rosa_samantha	Rh7AG030400 Rh7BG030300 Rh7CG032100 Rh7DG031100
rosa_wichuraiana	Rw7G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	469
AclWI	GGATC	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	459
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	2 cut(s)	81, 111
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	506
AgsI	TTSAA	5 cut(s)	64, 144, 283, 379, 555
AluBI	AGCT	3 cut(s)	47, 270, 312
AluI	AGCT	3 cut(s)	47, 270, 312
Alw26I	GTCTC	1 cut(s)	544
AlwI	GGATC	1 cut(s)	328
AoxI	GGCC	1 cut(s)	189
ApoI	RAATTY	1 cut(s)	459
Asp700I	GAANNNNTTC	1 cut(s)	492
AspS9I	GGNCC	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	2 cut(s)	77, 222
BfmI	CTRYAG	1 cut(s)	274
BfuAI	ACCTGC	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	255
BmsI	GCATC	3 cut(s)	4, 79, 234
BpmI	CTGGAG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	123
Bse8I	GATNNNNATC	1 cut(s)	35
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	1 cut(s)	94
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	544
BsmFI	GGGAC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	109
Bsp143I	GATC	5 cut(s)	6, 36, 68, 320, 591
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	255
BspMI	ACCTGC	1 cut(s)	469
BspPI	GGATC	1 cut(s)	328
BsrGI	TGTACA	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	5 cut(s)	6, 36, 68, 320, 591
BssT1I	CCWWGG	1 cut(s)	335
Bst4CI	ACNGT	2 cut(s)	278, 469
BstAUI	TGTACA	1 cut(s)	109
BstC8I	GCNNGC	2 cut(s)	94, 386
BstDEI	CTNAG	2 cut(s)	264, 595
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	5 cut(s)	9, 39, 71, 323, 594
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	5 cut(s)	6, 36, 68, 320, 591
BstMCI	CGRYCG	1 cut(s)	9
BstNSI	RCATGY	2 cut(s)	510, 550
BstSFI	CTRYAG	1 cut(s)	274
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	191
BsuTUI	ATCGAT	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	140
BveI	ACCTGC	1 cut(s)	469
Cac8I	GCNNGC	2 cut(s)	94, 386
Cfr13I	GGNCC	1 cut(s)	253
ClaI	ATCGAT	1 cut(s)	9
Csp6I	GTAC	2 cut(s)	80, 110
CviAII	CATG	3 cut(s)	498, 507, 547
CviJI	RGCY	8 cut(s)	47, 122, 150, 191, 270, 300, 312, 384
CviKI_1	RGCY	8 cut(s)	47, 122, 150, 191, 270, 300, 312, 384
CviQI	GTAC	2 cut(s)	80, 110
DdeI	CTNAG	2 cut(s)	264, 595
DpnI	GATC	5 cut(s)	8, 38, 70, 322, 593
DpnII	GATC	5 cut(s)	6, 36, 68, 320, 591
Eco130I	CCWWGG	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	335
EcoT22I	ATGCAT	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	3 cut(s)	501, 510, 550
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	3 cut(s)	497, 506, 546
FokI	GGATG	1 cut(s)	101
FspBI	CTAG	2 cut(s)	77, 222
GsuI	CTGGAG	1 cut(s)	443
HaeIII	GGCC	1 cut(s)	191
Hin1II	CATG	3 cut(s)	501, 510, 550
HinfI	GANTC	2 cut(s)	56, 563
Hpy188I	TCNGA	3 cut(s)	30, 316, 515
Hpy188III	TCNNGA	3 cut(s)	53, 229, 422
HpyAV	CCTTC	4 cut(s)	311, 421, 503, 595
HpyCH4III	ACNGT	2 cut(s)	278, 469
HpyCH4V	TGCA	4 cut(s)	92, 445, 478, 550
HpyF3I	CTNAG	2 cut(s)	264, 595
Hsp92II	CATG	3 cut(s)	501, 510, 550
Kzo9I	GATC	5 cut(s)	6, 36, 68, 320, 591
LweI	GCATC	3 cut(s)	4, 79, 234
MaeI	CTAG	2 cut(s)	77, 222
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	5 cut(s)	8, 38, 70, 322, 593
MboI	GATC	5 cut(s)	6, 36, 68, 320, 591
MboII	GAAGA	1 cut(s)	523
MfeI	CAATTG	1 cut(s)	519
MluCI	AATT	4 cut(s)	40, 354, 459, 519
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	4 cut(s)	202, 210, 356, 407
Mph1103I	ATGCAT	1 cut(s)	552
MroXI	GAANNNNTTC	1 cut(s)	492
MunI	CAATTG	1 cut(s)	519
Mva1269I	GAATGC	1 cut(s)	550
NdeII	GATC	5 cut(s)	6, 36, 68, 320, 591
NlaIII	CATG	3 cut(s)	501, 510, 550
NlaIV	GGNNCC	1 cut(s)	255
NsiI	ATGCAT	1 cut(s)	552
NspI	RCATGY	2 cut(s)	510, 550
PciI	ACATGT	1 cut(s)	506
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PctI	GAATGC	1 cut(s)	550
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	563
Ple19I	CGATCG	1 cut(s)	9
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PpuMI	RGGWCCY	1 cut(s)	253
PscI	ACATGT	1 cut(s)	506
Psp5II	RGGWCCY	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	253
PspPPI	RGGWCCY	1 cut(s)	253
PvuI	CGATCG	1 cut(s)	9
RsaI	GTAC	2 cut(s)	81, 111
RsaNI	GTAC	2 cut(s)	80, 110
Sau3AI	GATC	5 cut(s)	6, 36, 68, 320, 591
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	1 cut(s)	50
SfaNI	GCATC	3 cut(s)	4, 79, 234
SfcI	CTRYAG	1 cut(s)	274
SinI	GGWCC	1 cut(s)	253
Sse9I	AATT	4 cut(s)	40, 354, 459, 519
SspMI	CTAG	2 cut(s)	77, 222
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	2 cut(s)	278, 469
TaqI	TCGA	2 cut(s)	9, 323
TasI	AATT	4 cut(s)	40, 354, 459, 519
TatI	WGTACW	2 cut(s)	79, 109
TfiI	GAWTC	1 cut(s)	563
TscAI	CASTG	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	222, 523
TspRI	CASTG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	1 cut(s)	459
XceI	RCATGY	2 cut(s)	510, 550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	2 cut(s)	77, 222
Zsp2I	ATGCAT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.