Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005088

Physical Location & Seq

Genomic Coordinates Forward (+)

5895518 .. 5900019

Gene Structure 4502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1057100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGTGTGACATTGCAATTTTGCCTCCAAGCCGCTCTAGTTCTGCTCCAGAGCAACACACAGTAGAGAGAGAAAGAAGCCAAGAGAGAGAGAGGGGGAGAGGGATGGCCTCGCCGTCAGGACCCGAAACTCCGTCGCCGAACATCTACATACCGCCGGAGTGGTCCGAGGCAGCAGACTGTATAGCATACGATTCAGTCACTTGGCCGCCACCCATTGCCTTAGTATGTGGCGCTAAAAACTGCGGAAAATCCACCTTTTCCCGCCACCTCCTCAACATTTTTCTCCGGAGGTATAAAAAAGTTGGTTACTTGGATACAGATGTCGGTCAACCGGAGTTCAGTCCTCCTGGTTTTGTATCTCTCACTGTAATAGATGAAGCCACTCCAGATTTGACAATCCCGCATCTGAAGACACCGGAGAGATGTCTTTTCTTTGGTGATGAATACTGCTTATCTGACCAGAGTGATAGACCTACCAAGACTGGATTGCCTCTTGTTGTGAATACACCTGGCTGGGTGAAAGGTGTTGGTTATGATTTATTGGTGGATATGTTGAAATATATTGCCCCTACCCATGTTGTTAAAATAAACATATCAGCCAAGAGTAAGAATCTACCAAGTGGGGCATTCTGGTTAGATGAGGATCATGATGCTATGCTAAATCTGATAGAGATCAATTCAGCTCGTCAGGACTCTTTCAATAGATCGGTTCTAGTACAAAAGGATGCACGTCTGTTGCATGATGTACGAATACTGGCTTATTTCAGGCAGTGCTTTTCAAGTAGCCTAAACATTACTACAATCAAAGAACTTGCTAATGCTCTGGCCTCTCAACCTCCTTATGAAGTTCCAATATCTAGCATCAAGATTAGACATCTCCATTGTCAGGTCCCAGGTGCTGAGAGCTTCTACAGTTTGAACGCAACCATTGTTGGCTTGGCAGTTAGCTCTGGAGGATCAAAAGATTTACCTTGGTGTGTTGGTCTTGGAATTGTGAGAGGCATTGACACAGTCAAAGGCTTGCTATATGTGATAACACCTGTTCCAAGAGGCACTCTGGAGAAGGTCAATCTTTTCCTGCAAGGTTATATCCAAATTCCTACTGTGTTGTTGCAGGTGCAGGGCTGCATATCGCCTTACATGTCTGCAAATGTTCTCTCAACAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000448 GO:0000460 GO:0000463 GO:0000466 GO:0000469 GO:0000470 GO:0000478 GO:0000479 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051731 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLP1_P

Protein Analysis

390

Amino Acids

42.73

Weight (kDa)

6.46

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP1_P	PF16575	77 - 204	2.2e-26	mRNA cleavage and polyadenylation factor CLP1 P-loop
NOL9_C	PF25467	277 - 367	6.1e-31	NOL9-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11010 AT5G11010 AT5G11010 AT5G11010
fragaria_vesca	FvH4_5g16020 FvH4_5g16020 FvH4_5g16020 FvH4_5g16020
malus_domestica	MD06G1183600.v1.1 MD14G1057100.v1.1 MD14G1189700.v1.1
prunus_persica	Prupe.5G161200_v2.0.a1 Prupe.5G182300_v2.0.a1 Prupe.5G182300_v2.0.a1
pyrus_communis	pycom06g16270 pycom14g15720
rosa_chinensis	RchiOBHm_Chr7g0180051
rosa_laevigata	RLG00000005299
rosa_multiflora	Rmu_co8044072.1_g000001 Rmu_sc0002219.1_g000023 Rmu_sc0017616.1_g000001 Rmu_ssc0000119.1_g000025
rosa_roxburghii	Rroxscaffold_3G00273170
rosa_rugosa	Rorug06G0430200 Rorug06G0430200
rosa_samantha	Rh7AG030400 Rh7BG030300 Rh7CG032100 Rh7DG031100
rosa_wichuraiana	Rw7G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1105
Acc36I	ACCTGC	1 cut(s)	1105
AccBSI	CCGCTC	1 cut(s)	33
AccIII	TCCGGA	1 cut(s)	285
AciI	CCGC	6 cut(s)	31, 152, 206, 243, 262, 401
AclWI	GGATC	2 cut(s)	651, 964
AcoI	YGGCCR	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	1095
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	2 cut(s)	717, 747
AfiI	CCNNNNNNNGG	1 cut(s)	886
AflIII	ACRYGT	1 cut(s)	1140
AgsI	TTSAA	4 cut(s)	556, 700, 780, 919
AjiI	CACGTC	1 cut(s)	731
AjnI	CCWGG	3 cut(s)	346, 508, 892
AluBI	AGCT	4 cut(s)	683, 906, 948, 1167
AluI	AGCT	4 cut(s)	683, 906, 948, 1167
AlwI	GGATC	2 cut(s)	651, 964
AlwNI	CAGNNNCTG	1 cut(s)	899
Aor13HI	TCCGGA	1 cut(s)	285
AoxI	GGCC	3 cut(s)	105, 203, 825
ApeKI	GCWGC	2 cut(s)	170, 1125
ApoI	RAATTY	1 cut(s)	1095
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	3 cut(s)	119, 162, 889
AsuHPI	GGTGA	2 cut(s)	449, 529
AvaII	GGWCC	3 cut(s)	119, 162, 889
BaeI	ACNNNNGTAYC	2 cut(s)	306, 339
BbsI	GAAGAC	1 cut(s)	416
BbvI	GCAGC	2 cut(s)	182, 1112
BccI	CCATC	1 cut(s)	97
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	3 cut(s)	348, 510, 894
BciVI	GTATCC	1 cut(s)	307
BfaI	CTAG	3 cut(s)	36, 713, 858
BfmI	CTRYAG	1 cut(s)	910
BfoI	RGCGCY	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	1105
BfuI	GTATCC	1 cut(s)	307
BisI	GCNGC	4 cut(s)	31, 171, 206, 1126
BlsI	GCNGC	4 cut(s)	32, 172, 207, 1127
Bme1390I	CCNGG	3 cut(s)	348, 510, 894
Bme18I	GGWCC	3 cut(s)	119, 162, 889
BmgBI	CACGTC	1 cut(s)	731
BmgT120I	GGNCC	3 cut(s)	119, 162, 889
BmiI	GGNNCC	2 cut(s)	121, 891
BmrFI	CCNGG	3 cut(s)	348, 510, 894
BmsI	GCATC	4 cut(s)	412, 640, 715, 870
BpiI	GAAGAC	1 cut(s)	416
BpmI	CTGGAG	4 cut(s)	30, 369, 972, 1079
BsaBI	GATNNNNATC	2 cut(s)	642, 671
BsaJI	CCNNGG	3 cut(s)	165, 892, 971
BsaWI	WCCGGW	3 cut(s)	285, 331, 415
Bsc4I	CCNNNNNNNGG	1 cut(s)	886
Bse1I	ACTGG	2 cut(s)	487, 759
Bse3DI	GCAATG	2 cut(s)	9, 213
Bse8I	GATNNNNATC	2 cut(s)	642, 671
BseAI	TCCGGA	1 cut(s)	285
BseBI	CCWGG	3 cut(s)	348, 510, 894
BseDI	CCNNGG	3 cut(s)	165, 892, 971
BseGI	GGATG	2 cut(s)	108, 730
BseJI	GATNNNNATC	2 cut(s)	642, 671
BseLI	CCNNNNNNNGG	1 cut(s)	886
BseMI	GCAATG	2 cut(s)	9, 213
BseMII	CTCAG	1 cut(s)	891
BseNI	ACTGG	2 cut(s)	487, 759
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	182, 1112
BseYI	CCCAGC	1 cut(s)	513
BsgI	GTGCAG	1 cut(s)	1139
BshFI	GGCC	3 cut(s)	107, 205, 827
BsiSI	CCGG	4 cut(s)	155, 286, 332, 416
BslFI	GGGAC	1 cut(s)	875
BslI	CCNNNNNNNGG	1 cut(s)	886
BsmFI	GGGAC	1 cut(s)	875
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	3 cut(s)	107, 205, 827
Bsp13I	TCCGGA	1 cut(s)	285
Bsp143I	GATC	4 cut(s)	643, 672, 704, 956
BspACI	CCGC	6 cut(s)	31, 152, 206, 243, 262, 401
BspANI	GGCC	3 cut(s)	107, 205, 827
BspCNI	CTCAG	1 cut(s)	892
BspEI	TCCGGA	1 cut(s)	285
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	2 cut(s)	121, 891
BspMI	ACCTGC	1 cut(s)	1105
BspPI	GGATC	2 cut(s)	651, 964
BsrBI	CCGCTC	1 cut(s)	33
BsrDI	GCAATG	2 cut(s)	9, 213
BsrI	ACTGG	2 cut(s)	487, 759
BssECI	CCNNGG	3 cut(s)	165, 892, 971
BssMI	GATC	4 cut(s)	643, 672, 704, 956
BssT1I	CCWWGG	1 cut(s)	971
Bst2UI	CCWGG	3 cut(s)	348, 510, 894
Bst4CI	ACNGT	6 cut(s)	61, 179, 367, 914, 1012, 1105
BstC8I	GCNNGC	1 cut(s)	1022
BstDEI	CTNAG	2 cut(s)	220, 900
BstF5I	GGATG	2 cut(s)	108, 730
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	4 cut(s)	646, 675, 707, 959
BstMBI	GATC	4 cut(s)	643, 672, 704, 956
BstNI	CCWGG	3 cut(s)	348, 510, 894
BstNSI	RCATGY	1 cut(s)	1144
BstSCI	CCNGG	3 cut(s)	346, 508, 892
BstSFI	CTRYAG	1 cut(s)	910
BstV1I	GCAGC	2 cut(s)	182, 1112
BstV2I	GAAGAC	1 cut(s)	416
BsuI	GTATCC	1 cut(s)	307
BsuRI	GGCC	3 cut(s)	107, 205, 827
BtrI	CACGTC	1 cut(s)	731
BtsCI	GGATG	2 cut(s)	108, 730
BtsI	GCAGTG	1 cut(s)	776
BtsIMutI	CAGTG	2 cut(s)	363, 776
BveI	ACCTGC	1 cut(s)	1105
Cac8I	GCNNGC	1 cut(s)	1022
CaiI	CAGNNNCTG	1 cut(s)	899
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	3 cut(s)	119, 162, 889
Csp6I	GTAC	2 cut(s)	716, 746
CviAII	CATG	4 cut(s)	575, 647, 740, 1141
CviQI	GTAC	2 cut(s)	716, 746
DdeI	CTNAG	2 cut(s)	220, 900
DpnI	GATC	4 cut(s)	645, 674, 706, 958
DpnII	GATC	4 cut(s)	643, 672, 704, 956
EaeI	YGGCCR	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	971
Eco47I	GGWCC	3 cut(s)	119, 162, 889
Eco57I	CTGAAG	1 cut(s)	428
EcoO109I	RGGNCCY	2 cut(s)	119, 889
EcoRII	CCWGG	3 cut(s)	346, 508, 892
EcoT14I	CCWWGG	1 cut(s)	971
ErhI	CCWWGG	1 cut(s)	971
FaeI	CATG	4 cut(s)	578, 650, 743, 1144
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	4 cut(s)	574, 646, 739, 1140
FauI	CCCGC	2 cut(s)	269, 408
Fnu4HI	GCNGC	4 cut(s)	31, 171, 206, 1126
FokI	GGATG	2 cut(s)	115, 737
Fsp4HI	GCNGC	4 cut(s)	31, 171, 206, 1126
FspBI	CTAG	3 cut(s)	36, 713, 858
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	4 cut(s)	31, 171, 206, 1126
GsaI	CCCAGC	1 cut(s)	517
GsuI	CTGGAG	4 cut(s)	30, 369, 972, 1079
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	107, 205, 827
HapII	CCGG	4 cut(s)	155, 286, 332, 416
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	4 cut(s)	578, 650, 743, 1144
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	329
HindII	GTYRAC	1 cut(s)	329
HinfI	GANTC	3 cut(s)	191, 610, 692
HpaII	CCGG	4 cut(s)	155, 286, 332, 416
HphI	GGTGA	2 cut(s)	449, 529
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	4 cut(s)	166, 408, 457, 666
Hpy188III	TCNNGA	9 cut(s)	47, 117, 286, 386, 647, 689, 865, 951, 1058
Hpy8I	GTNNAC	1 cut(s)	329
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	1057
HpyCH4III	ACNGT	6 cut(s)	61, 179, 367, 914, 1012, 1105
HpyCH4IV	ACGT	1 cut(s)	730
HpyCH4V	TGCA	8 cut(s)	14, 728, 739, 1081, 1114, 1120, 1128, 1148
HpyF3I	CTNAG	2 cut(s)	220, 900
HpySE526I	ACGT	1 cut(s)	730
Hsp92II	CATG	4 cut(s)	578, 650, 743, 1144
HspAI	GCGC	1 cut(s)	231
Kpn2I	TCCGGA	1 cut(s)	285
Kzo9I	GATC	4 cut(s)	643, 672, 704, 956
LmnI	GCTCC	1 cut(s)	49
Lsp1109I	GCAGC	2 cut(s)	182, 1112
LweI	GCATC	4 cut(s)	412, 640, 715, 870
MaeI	CTAG	3 cut(s)	36, 713, 858
MaeII	ACGT	1 cut(s)	730
MaeIII	GTNAC	3 cut(s)	5, 196, 305
MalI	GATC	4 cut(s)	645, 674, 706, 958
MbiI	CCGCTC	1 cut(s)	33
MboI	GATC	4 cut(s)	643, 672, 704, 956
MboII	GAAGA	1 cut(s)	421
MluCI	AATT	4 cut(s)	15, 676, 990, 1095
MlyI	GAGTC	1 cut(s)	686
MroI	TCCGGA	1 cut(s)	285
MseI	TTAA	1 cut(s)	582
MspI	CCGG	4 cut(s)	155, 286, 332, 416
MspR9I	CCNGG	3 cut(s)	348, 510, 894
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	3 cut(s)	348, 510, 894
NdeII	GATC	4 cut(s)	643, 672, 704, 956
NlaIII	CATG	4 cut(s)	578, 650, 743, 1144
NlaIV	GGNNCC	2 cut(s)	121, 891
NmuCI	GTSAC	2 cut(s)	5, 196
NspI	RCATGY	1 cut(s)	1144
PagI	TCATGA	1 cut(s)	646
PaqCI	CACCTGC	1 cut(s)	1105
PciI	ACATGT	1 cut(s)	1140
PctI	GAATGC	1 cut(s)	626
PfeI	GAWTC	2 cut(s)	191, 610
PflFI	GACNNNGTC	1 cut(s)	1010
PkrI	GCNGC	4 cut(s)	32, 172, 207, 1127
PleI	GAGTC	1 cut(s)	686
PpsI	GAGTC	1 cut(s)	686
PpuMI	RGGWCCY	2 cut(s)	119, 889
PscI	ACATGT	1 cut(s)	1140
Psp5II	RGGWCCY	2 cut(s)	119, 889
Psp6I	CCWGG	3 cut(s)	346, 508, 892
PspFI	CCCAGC	1 cut(s)	513
PspGI	CCWGG	3 cut(s)	346, 508, 892
PspN4I	GGNNCC	2 cut(s)	121, 891
PspPI	GGNCC	3 cut(s)	119, 162, 889
PspPPI	RGGWCCY	2 cut(s)	119, 889
PstNI	CAGNNNCTG	1 cut(s)	899
PsyI	GACNNNGTC	1 cut(s)	1010
RsaI	GTAC	2 cut(s)	717, 747
RsaNI	GTAC	2 cut(s)	716, 746
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	4 cut(s)	31, 171, 206, 1126
Sau3AI	GATC	4 cut(s)	643, 672, 704, 956
Sau96I	GGNCC	3 cut(s)	119, 162, 889
SchI	GAGTC	1 cut(s)	686
ScrFI	CCNGG	3 cut(s)	348, 510, 894
SfaNI	GCATC	4 cut(s)	412, 640, 715, 870
SfcI	CTRYAG	1 cut(s)	910
SinI	GGWCC	3 cut(s)	119, 162, 889
Sse9I	AATT	4 cut(s)	15, 676, 990, 1095
SsiI	CCGC	6 cut(s)	31, 152, 206, 243, 262, 401
SspMI	CTAG	3 cut(s)	36, 713, 858
StyD4I	CCNGG	3 cut(s)	346, 508, 892
StyI	CCWWGG	1 cut(s)	971
TaaI	ACNGT	6 cut(s)	61, 179, 367, 914, 1012, 1105
TaiI	ACGT	1 cut(s)	733
TaqII	GACCGA	1 cut(s)	314
TasI	AATT	4 cut(s)	15, 676, 990, 1095
TatI	WGTACW	1 cut(s)	715
TauI	GCSGC	2 cut(s)	33, 208
TfiI	GAWTC	2 cut(s)	191, 610
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	2 cut(s)	370, 776
TseFI	GTSAC	2 cut(s)	5, 196
TseI	GCWGC	2 cut(s)	170, 1125
Tsp45I	GTSAC	2 cut(s)	5, 196
TspDTI	ATGAA	3 cut(s)	390, 456, 858
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	2 cut(s)	370, 776
Tth111I	GACNNNGTC	1 cut(s)	1010
VpaK11BI	GGWCC	3 cut(s)	119, 162, 889
XapI	RAATTY	1 cut(s)	1095
XceI	RCATGY	1 cut(s)	1144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	934
XspI	CTAG	3 cut(s)	36, 713, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.